Biology Commons^™

Are Populations Of Economically Important Bonefish And Queen Conch 'Open' Or 'Closed' In The Northern Caribbean Basin?, Marlis R. Douglas, Tyler Chafin, Julie E. Claussen, David P. Philipp, Michael E. Douglas

Biological Sciences Faculty Publications and Presentations

Demographics of co-occurring species can often be diagnosed through population genomic analyses of single nucleotide polymorphisms (SNPs). These data can define population structure, gene flow, and candidate regions in the genome that potentially reflect local adaptations. They can also gauge whether populations are demographically “open” or “closed” (i.e., with global or local recruitment). We derived SNPs from double-digest restriction-site associated DNA (ddRAD) to test the demographics of commercially important bonefish Albula vulpes (N = 117) and queen conch Lobatus gigas (N = 60) from two northeast Caribbean Basin islands (Grand Bahama to the north and Eleuthera to the …

Ocean Acidification Modulates The Impact Of Fluoxetine On Larval Behaviors Of Non-Target Organisms, Veronica A. Chua , '21

Senior Theses, Projects, and Awards

Emerging pollutants, such as pharmaceuticals from human waste, are continuously released into aquatic systems. Although pharmaceuticals alone can adversely impact marine organisms, the bioavailability of many pharmaceuticals are dependent on ambient physical conditions, like pH. As few studies have considered the interactive effects of pharmaceutical pollution and anthropogenic ocean acidification, this study investigated the behavioral response of larval sea urchins (Heliocidaris crassispina) and ascidians (Styela plicata) to environmentally-relevant concentrations of fluoxetine (10 and 100 ng L⁻¹) under ambient (pH 8.0) and acidified conditions (pH 7.7). Larval ascidians reared at pH 8.0 exhibited swam in slower, more …

1st Place Contest Entry: Psychogenic Non-Epileptic Seizures Disorder: Treatment After The Diagnostic Odyssey, Heather Andrini, Ashley Okhovat, Sydni Au Hoy

Kevin and Tam Ross Undergraduate Research Prize

This is Heather Andrini, Ashley Okhovat, and Sydni Au Hoy's submission for the 2021 Kevin and Tam Ross Undergraduate Research Prize, which won first place. It contains thier essay on using library resources, a summary of their research project on psychogenic non-epileptic seizures (PNES) disorder, and their works cited list.

Heather, Ashley, and Sydni are juniors at Chapman University, majoring in Biological Sciences. Their faculty mentor is Dr. Gregory Goldsmith.

Anaplasma Phagocytophilum Modulates Mammalian And Arthropod Signaling For Its Survival And Transmission, Supreet Khanal

Biomedical Sciences Theses & Dissertations

Vector-borne diseases (VBDs) are illnesses transmitted to humans and other animals by arthropods such as ticks, mosquitoes, and fleas. These arthropod vectors transmit infectious pathogens such as viruses, bacteria, and protozoa, to humans during blood-feeding. We have very few control strategies to treat or control these diseases. Human anaplasmosis, caused by the bacterium Anaplasma phagocytophilum, is the second most common tick-borne disease in the United States. This work defines three studies elucidating Anaplasma phagocytophilum-mediated modulation of cell signaling in mammalian cells and arthropod vector Ixodes scapularis ticks.

The first study focused on mammalian PI3 kinases signaling in regulating …

Determination Of The Presence Of Rickettsia Spp. And Borrelia Spp. Carried By Tortoise Ticks From Madagascar, Anna Phan

Biological Sciences Theses & Dissertations

Ticks were removed from three species of Malagasy tortoises, Astrochelys yniphora, A. radiata, and Pyxis arachnoides (comprising two subspecies P. a. arachnoides and P. a. oblonga), between 2012 and 2015. The ticks were presumed to be from the genus Amblyomma. Ticks were morphologically identified and then checked molecularly to confirm their classification or identify any ticks that could not be morphologically identified. Molecular identification was done via end-point PCR that amplified tick cytochrome oxidase (CO1) and tick 12S rRNA genes. Ticks were screened via a real-time polymerase chain reaction assay for the presence of Rickettsia spp. …

The Role Of Backreef Soundscapes And Their Spatial Structure For Recruitment Of Tropical Marine Larvae, Emily R. Anderson

Biological Sciences Theses & Dissertations

Underwater sound is a cue used by many marine larvae to orient to coastal habitats including backreef, sponge-dominated hardbottom habitat in the Florida Keys (Florida, USA) – a particularly “noisy” coastal habitat. However, the distance over which acoustic cues are attractive to settlement-stage larvae - is generally unknown. I examined this phenomenon in a region of the Florida Keys where mass sponge die-offs have diminished both underwater soundscapes and larval settlement. The absence of pronounced hardbottom-associated sound over such a large area allowed me to experimentally test in situ the response of fish and invertebrate larvae to broadcasted sounds at …

Moderate Heat-Assisted Gene Electrotransfer For Intradermal Dna Vaccination And Protein Replacement Therapy In The Skin, Chelsea Marie Edelblute

Biomedical Sciences Theses & Dissertations

Gene electrotransfer (GET) holds great promise for the delivery of therapeutic agents. The skin serves as an attractive target for GET due to its availability and unique cellular composition. Protein replacement therapy and DNA vaccination are potential applications for intradermal GET. The combination of moderate tissue preheating and GET has been shown to achieve elevated gene expression levels while reducing the necessary applied voltage. In the current work, we utilized a 16-pin multi-electrode array (MEA) and incorporated nine optical fibers, connected to an infrared laser, to pre-heat the tissue to 43°C before application of GET. In a guinea pig model, …

Food Security As A Factor Of Sustainable Development Of The Country, Timur Nurimbetov

Karakalpak Scientific Journal

The article examines the state of the food market and the trends in ensuring the country’s food security. The article also analyzes the regional characteristics of the agricultural products market in the Republic of Karakalpakstan. The saturation level of regional food markets has been studied. Scientific conclusions and practical recommendations on the supply of food to the population have been made.

Influence Of Laterial State Of Pair Impurity Complex On Recombination Processes In Semiconductors, L Yu Leyderman, R A. Ayukhanov, Abat Uteniyazov, E S. Esenbaeva, Sh X. Annayeva

Karakalpak Scientific Journal

The paper analyzes the question of the possible influence of the lateral state of a paired impurity complex on the recombination processes. It is shown that the lateral state of the paired impurity complex does not affect the recombination processes of nonequilibrium carriers - they go through that component of the impurity complex that exchanges carriers with both bands (in this particular case, through the component). The second component of the complex () can apparently play some role in the processes of carrier attachment.

A Crucial Role For Antimicrobial Stewardship In The Midst Of Covid-19, Bindu Mayi, Manda Mainville, Rida Altaf, Michelle Lanspa, Sheel Vaniawala, Thomas A. Ollerhead, Aarti Raja

Biology Faculty Articles

As the world deals with a pandemic, there remains another global challenge that cannot be ignored. Use of broad-spectrum antibiotics may be justified, as we are trying to treat a novel disease condition, which, in turn, could lead to an increase in antimicrobial resistance. We can decrease morbidity, mortality, and health care costs by controlling antimicrobial resistance, but it requires antimicrobial stewardship. Major components of effective and timely antimicrobial stewardship are diagnostic stewardship, infection prevention and control, and integration of COVID-19-specific flags into electronic health records, all of which may be integrated into current strategies of COVID-19 mitigation and management. …

A Crucial Role For Antimicrobial Stewardship In The Midst Of Covid-19, Bindu S. Mayi, Manda Mainville, Rida Altaf, Michelle Lanspa, Sheel Vaniawala, Thomas A. Ollerhead, Aarti Raja

Biology Faculty Articles

As the world deals with a pandemic, there remains another global challenge that cannot be ignored. Use of broad-spectrum antibiotics may be justified, as we are trying to treat a novel disease condition, which, in turn, could lead to an increase in antimicrobial resistance. We can decrease morbidity, mortality, and health care costs by controlling antimicrobial resistance, but it requires antimicrobial stewardship. Major components of effective and timely antimicrobial stewardship are diagnostic stewardship, infection prevention and control, and integration of COVID-19-specific flags into electronic health records, all of which may be integrated into current strategies of COVID-19 mitigation and management. …

Undergraduate Research In The Time Of Covid-19: A Remote Imaging Protocol For Physically Distanced Students Studying Wildlife., Manuela Tripepi, Tobias Landberg

College of Life Sciences Faculty Papers

The COVID-19 pandemic has shuttered many university research labs because campuses are closed, and faculty and students lack productive ways of working remotely. This presents major difficulties for students who need research opportunities to fulfill their intellectual growth potential and their undergraduate research and thesis requirements. Without research experiences, undergraduates may be less competitive for future jobs and graduate programs. Similarly, faculty need research avenues to advance their academic careers while maintaining physically distant protocols. We outline here a budget-friendly, COVID-friendly, adaptable protocol that aims to introduce students to the wildlife research opportunities surrounding their campus or home through observation …

Microarthropod Contributions To Fitness Variation In The Common Moss ., Erin E. Shortlidge, Sarah B. Carey, Adam C. Payton, Stuart F. Mcdaniel, Todd N. Rosenstiel, Sarah M. Eppley

Biology Faculty Publications and Presentations

The evolution of sustained plant-animal interactions depends critically upon genetic variation in the fitness benefits from the interaction. Genetic analyses of such interactions are limited to a few model systems, in part because genetic variation may be absent or the interacting species may be experimentally intractable. Here, we examine the role of sperm-dispersing microarthropods in shaping reproduction and genetic variation in mosses. We established experimental mesocosms with known moss genotypes and inferred the parents of progeny from mesocosms with and without microarthropods, using a pooled sequencing approach. Moss reproductive rates increased fivefold in the presence of microarthropods, relative to control …

Evolution And Development Of Staminodes In Paronychia (Caryophyllaceae), Andrea D. Appleton

Honors College Theses

Staminodes are infertile stamens that have evolved numerous times in flowering plants and exhibit a vast array of forms and functions. Variation in staminodes suggests that numerous evolutionary processes underlie their origins, but to understand their how and why they evolved, comparative studies are needed in groups of closely related species. Identifying structures as staminodes is not always straightforward and sometimes requires corroborating phylogenetic and developmental evidence. Staminodial structures in Paronychia (Caryophyllaceae), for example, vary in shape and size and have been referred to as both petals and staminodes, rendering their homology uncertain. The development of staminodes was compared across …

Morph- And Sex-Specific Differences In Corticosterone Of The Arizona Tiger Salamander (Ambystoma Mavortium Nebulosum), Megan Zerger

Scholars Week

Life history morph, sex, and body condition are traits that may influence stress within salamander populations because of differences in physiology and environmental conditions. Given widespread declines and the effects chronic stress can have on amphibian health, it is important to understand within-population drivers of stress and how population level variation may influence population viability. Thus, the objective of our study was to assess how corticosterone varies within the Arizona tiger salamander (Ambystoma mavortium nebulosum) population at the Mexican Cut Nature Preserve. We used a non-invasive skin swabbing method to collect baseline and elevated corticosterone from paedomorph (aquatic …

Organization Of Compact Spinning Technology In Textile Clusters, Baxtiyar Aralbaevich Paluanov, Abdimalik Pirmatovich Pirmatov

Karakalpak Scientific Journal

The article proposes a system of continuous supply of raw cotton in continuous spinning technology and methods of maximizing the preservation of the natural properties of the fiber and obtaining high-quality yarn.

Epigenetic Potential In An Introduced Passerine, Haley E. Hanson

USF Tampa Graduate Theses and Dissertations

Epigenetic modifications play a critical role in numerous processes throughout the lifetime of an organism by influencing gene regulation. Responsive to both endogenous cues and external stimuli, epigenetic modifications are key mechanisms underlying phenotypic plasticity. Epigenetic potential, or the capacity for phenotypic plasticity mediated by epigenetic modifications, can be encoded within the genome via genetic variation underlying aspects of epigenetic modifications. For example, one type of epigenetic modification, DNA methylation, predominately occurs at CpG motifs in vertebrates. The number of CpG sites within the genome then represents the capacity for DNA methylation to occur and is one form of epigenetic …

Development Of A Preventive Influenza D Virus Vaccine, Qingsheng Li, Yanmin Wan, Feng Li

School of Biological Sciences: Faculty Publications

The present disclosure provides a DNA vaccine or immunogenic composition expressing consensus hemagglutinin esterase - fusion ( HEF ) protein ( FluD - Vax ) and a protein based vaccine utilizing the HEF consensus protein . Methods of making and using the compositions are also provided herein.

Distribution, Diversity, And Biogeography Of Anaerobic Carbon Monoxide Uptake By Microbial Communities In Soils And Sediments, Amber N. Depoy

LSU Master's Theses

Carbon monoxide (CO) is primarily known for being a toxic gas. However, CO is used by microorganisms as an electron or carbon source in a variety of respiratory processes. Different kinds of microorganisms utilize CO aerobically and anaerobically, using two distinct CO dehydrogenases (CODHs). Aerobes oxidize CO using a molybdenum-dependent dehydrogenase (Mo-CODH), while anaerobes utilize a nickel-dependent CO dehydrogenase (Ni-CODH). Studies of the biochemistry and microbiology of aerobic and anaerobic CO oxidation are extensive, but relatively little is known about the ecology of anaerobic CO oxidation. In an effort to test new hypotheses about the ecology of anaerobic CO oxidation, …

Experience, But Not Age, Is Associated With Volumetric Mushroom Body Expansion In Solitary Alkali Bees, Mallory A. Hagadorn, Makenna M. Johnson, Adam R. Smith, Marc A. Seid, Karen M. Kapheim

Biology Student Research

In social insects, changes in behavior are often accompanied by structural changes in the brain. This neuroplasticity may come with experience (experience-dependent) or age (experience-expectant). Yet, the evolutionary relationship between neuroplasticity and sociality is unclear, because we know little about neuroplasticity in the solitary relatives of social species. We used confocal microscopy to measure brain changes in response to age and experience in a solitary halictid bee (Nomia melanderi). First, we compared the volume of individual brain regions among newly emerged females, laboratory females deprived of reproductive and foraging experience, and free-flying, nesting females. Experience, but not age, …

Binding Partners Of 14-3-3 (Ywha) Protein Isoforms Among Mammalian Species, Tissues, And Developmental Stages, Taylor R. Covington, Santanu De

Biology Faculty Articles

The 14-3-3 (YWHA or Tyrosine 3-Monooxygenase/Tryptophan 5-Monooxygenase Activation proteins) are a family of abundant, highly conserved, ubiquitous, acidic, and homologous proteins expressed in most eukaryotes ranging from plants to animals, including humans, important in regulating a multitude of cellular processes such as signal transduction, cell cycle, protein trafficking, metabolism, apoptosis, and development. Mammals have been noted contain seven isoforms of these proteins (beta, epsilon, eta, gamma, sigma, tau/theta, and zeta), encoded by separate genes. The 14-3-3 proteins are known to interact with over 200 binding partners in isoform-specific, tissue-specific, and developmental stage-specific ways. The present review article encapsulates previously published …

A Method For Repeated, Longitudinal Sampling Of Individual Aedes Aegypti For Transmission Potential Of Arboviruses, E. Handly Mayton, Heather Hernandez, Christopher Vitek, Rebecca C. Christofferson

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Mosquito-borne viruses are the cause of significant morbidity and mortality worldwide, especially in low- and middle-income countries. Assessing risk for viral transmission often involves characterization of the vector competence of vector–virus pairings. The most common determination of vector competence uses discreet, terminal time points, which cannot be used to investigate variation in transmission aspects, such as biting behavior, over time. Here, we present a novel method to longitudinally measure individual biting behavior and Zika virus (ZIKV) transmission. Individual mosquitoes were exposed to ZIKV, and from 9 to 24 days post-exposure, individuals were each offered a 180 μL bloodmeal every other …

Latitude Dictates Plant Diversity Effects On Instream Decomposition, Luz Boyero, Javier Pérez, Naiara López-Rojo, Alan M. Tonin, Francisco Correa-Araneda, Richard G. Pearson, Jaime Bosch, Ricardo J. Albariño, Sankarappan Anbalagan, Leon A. Barmuta, Leah Beesley, Francis J. Burdon, Adriano Caliman, Marcos Callisto, Ian C. Campbell, Bradley J. Cardinale, J. Jesús Casas, Ana M. Chará-Serna, Szymon Ciapała, Eric Chauvet, Jose Checo Colón-Gaud, Aydeé Cornejo, Aaron M. Davis, Monika Degebrodt, Emerson S. Dias, María E. Díaz, Michael M. Douglas, Arturo Elosegi, Andrea C. Encalada, Elvira De Eyto, Ricardo Figueroa, Alexander S. Flecker, André Frainer, Juliana S. França, Erica A. García, Gabriela García, Pavel E. García, Mark O. Gessner, Paul S. Giller, Jesús E. Gómez, Sergio Gómez, José F. Gonçalves Jr., Manuel A. S. Graça, Robert O. Hall Jr., Neusa Hamada, Luiz U. Hepp, Cang Hui, Daichi Imazawa, Tomoya Iwata, Edson S. A. Junior, Samuel K. Kariuki, Andrea Landeira-Dabarca, María Leal, Kaisa Lehosmaa, Charles M. M’ Erimba, Richard Marchant, Renato T. Martins, Frank O. Masese, Megan Camden, Brendan G. Mckie, Adriana O. Medeiros, Jen A. Middleton, Timo Muotka, Junjiro N. Negishi, Jesús Pozo, Alonso Ramírez, Renan S. Rezende, John S. Richardson, José Rincón, Juan Rubio-Ríos, Claudia Serrano, Angela R. Shaffer, Fran Sheldon, Christopher M. Swan, Nathalie S. D. Tenkiano, Scott D. Tiegs, Janine R. Tolod, Michael Vernasky, Anne Watson, Mourine J. Yegon, Catherine M. Yule

Biology: Faculty Publications

Running waters contribute substantially to global carbon fluxes through decomposition of terrestrial plant litter by aquatic microorganisms and detritivores. Diversity of this litter may influence instream decomposition globally in ways that are not yet understood. We investigated latitudinal differences in decomposition of litter mixtures of low and high functional diversity in 40 streams on 6 continents and spanning 113° of latitude. Despite important variability in our dataset, we found latitudinal differences in the effect of litter functional diversity on decomposition, which we explained as evolutionary adaptations of litter-consuming detritivores to resource availability. Specifically, a balanced diet effect appears to operate …

Examining The Mechanistic Roles Of Integrin Alpha-6 In Cancer Metastasis., Chase T. Clark

Honors College Theses

Metastasis- the spread of cancer cells from the primary tumor to the surrounding tissues- is responsible for 90% of cancer deaths. Integrin alpha-6 (ITGA6) is a specific transmembrane cell surface protein that functions in cell surface adhesion and signaling. ITGA6 is upregulated in many types of cancers and promotes the migration and invasion of cancer cells to surrounding tissues. It is my objective to determine the mechanism through which ITGA6 facilitates the migration of cancer cells through the extracellular matrix (ECM). These experiments helped to establish the role of ITGA6 in tumor development and provide focus for possible chemotherapeutic treatment. …

The Influence Of Autism Linked Gene Topoisomerase 3b (Top3b) On Neural Development In Zebrafish, Sydney Doolittle

Honors College Theses

Autism Spectrum Disorder is a class of developmental disabilities characterized by a spectrum of social, communication, and behavioral impairments in affected individuals. Studies have shown these defects stem from abnormal brain development during critical periods during early development. The underlying genetic cause of these impairments is not well understood but is believed to be a combination of a complex pairing of genetic and environmental factors. One of the genetic factors that has been recognized to influence the phenotypic symptoms of ASD is the enzyme topoisomerase 3β (top3β.) Topoisomerases are responsible for the prevention of supercoiling during DNA replication. Top3β is …

Mitochondrial Oma1 And Opa1 As Gatekeepers Of Organellar Structure/Function And Cellular Stress Response, Robert Gilkerson, Patrick De La Torre, Shaynah St. Vallier

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Mammalian mitochondria are emerging as a critical stress-responsive contributor to cellular life/death and developmental outcomes. Maintained as an organellar network distributed throughout the cell, mitochondria respond to cellular stimuli and stresses through highly sensitive structural dynamics, particularly in energetically demanding cell settings such as cardiac and muscle tissues. Fusion allows individual mitochondria to form an interconnected reticular network, while fission divides the network into a collection of vesicular organelles. Crucially, optic atrophy-1 (OPA1) directly links mitochondrial structure and bioenergetic function: when the transmembrane potential across the inner membrane (ΔΨm) is intact, long L-OPA1 isoforms carry out fusion of the mitochondrial …

A Comparison Of Intertidal Metazoan Biodiversity Between Previously Oiled Sheared And Intact Marsh Margins And Between Multiple Salinity Zones In The Coastal Marshes Of Louisiana, Patrick M. Rayle

LSU Master's Theses

Marshes in Louisiana are under threat from numerous natural and anthropogenic sources. A consequence of these threats are sheared marsh margins, which result from the impact of storm surge on previously oiled, weakened marsh. These conditions occurred in Louisiana marshes after Hurricane Isaac in 2012 followed the Deepwater Horizon oil spill in 2010, particularly in the shorelines surrounding Bay Jimmy. The second and third chapters of this thesis focus on the differences in biodiversity between the sheared and intact marsh margins in impacted sites in Bay Jimmy. Metabarcoding methods were used to determine community composition of the sediment within marsh …

Vertebrate Impact On A Newly Deployed Shoreline Stabilization Project By Wildlife Camera Analysis, Julia Rifenberg, Jason Litwak, Rebecca Fillyaw

The Pegasus Review: UCF Undergraduate Research Journal

Living shoreline stabilization is a technique that utilizes plants and other natural elements to protect estuarine coasts. Research has provided minimal information about which vertebrate species utilize living shorelines post-deployment. For this project, ten wildlife cameras were placed along a living shoreline site in Canaveral National Seashore (CANA) to document which vertebrate species utilize the living shoreline and surrounding vegetation. This shoreline was stabilized with red mangroves (Rhizophora mangle) and eastern oyster (Crassostrea virginica) shell bags in June 2019. The cameras, activated by motion sensors, remained at the site for five days a month for seven …

Non-Breeding Ecology Of Loggerhead Shrikes In An Intensive Agricultural Region, Emily Rose Donahue

Student Theses and Dissertations

As intensive agriculture has transformed much of the landscape across central North America, many grassland species have had to learn to adjust these new, highly homogeneous habitats while facing steep population declines. The Loggerhead Shrike (Lanius ludovicianus; hereinafter shrike) is one such declining species that persists in these agricultural landscapes. However, we lack information on the sustainability of these populations, and shrike non-breeding ecology, as for most passerines, remains understudied. Specifically, little is known about non-breeding behavior, diet, survival, site fidelity, and habitat selection. If survival, space use, and habitat selection metrics differ between demographic groups within non-breeding populations also …

Ecological Physiology Of Rafinesque’S Big-Eared Bats (Corynorhinus Rafinesquii) Roosting In An Anthropogenic Structure In Arkansas, Benjamin N. Spitz

Student Theses and Dissertations

Rafinesque’s big-eared bats (Corynorhinus rafinesquii) are suffering habitat loss due to deforestation of bottomland hardwoods which an increase in agriculture forces maternity colonies to roost in anthropogenic structures. In Arkansas I explore how bats from maternity colonies in anthropogenic structures use torpor and how torpor is affected by chronic stress and ectoparasites. During June- August of 2018-2019, I surveyed a maternity colony inside a barn. Captured bats were tagged with temperature-sensitive transmitters and tracked to roost trees and the barn daily confirming day roosts. Using Lotek data loggers, data from transmitters were collected as skin temperature and compared to ambient …