Biology Commons^™

Heatwaves And Novel Host Consumption Increase Overwinter Mortality Of An Imperiled Wetland Butterfly, Mariana Abarca, Elise A. Larsen, Leslie Ries

Biological Sciences: Faculty Publications

Disruptive effects of climate change include range shifts, phenological mismatches among consumers and producers, and population declines. While these biological alterations have been widely documented, studies identifying specific mechanisms linking climate change to population declines are scarce. Extreme events, such as heatwaves can have devastating effects on living organisms and are increasing in frequency as Earth warms. Hence, understanding the effects of heatwaves on insects is necessary to inform conservation efforts and to develop predictions of population dynamics under future climate scenarios. Here, we experimentally evaluated the effects of heatwaves on the survival and phenology of the Baltimore Checkerspot (Euphydryas …

The Anti-Sigma Factor Muca Of Pseudomonas Aeruginosa: Dramatic Differences Of A Muca22 Vs. A Δmuca Mutant In Anaerobic Acidified Nitrite Sensitivity Of Planktonic And Biofilm Bacteria In Vitro And During Chronic Murine Lung Infection, Warunya Panmanee, Shengchang Su, Michael J. Schurr, Gee W. Lau, Xiaoting Zhu, Zhaowei Ren, Cameron T. Mcdaniel, Long J. Lu, Dennis E. Ohman, Daniel A. Muruve, Ralph J. Panos, Hongwei D. Yu, Thomas B. Thompson, Boo Shan Tseng, Daniel J. Hassett

Life Sciences Faculty Research

Mucoid mucA22 Pseudomonas aeruginosa (PA) is an opportunistic lung pathogen of cystic fibrosis (CF) and chronic obstructive pulmonary disease (COPD) patients that is highly sensitive to acidified nitrite (A-NO2-). In this study, we first screened PA mutant strains for sensitivity or resistance to 20 mM A-NO2- under anaerobic conditions that represent the chronic stages of the aforementioned diseases. Mutants found to be sensitive to A-NO2- included PA0964 (pmpR, PQS biosynthesis), PA4455 (probable ABC transporter permease), katA (major catalase, KatA) and rhlR (quorum sensing regulator). In contrast, mutants lacking PA0450 (a putative phosphate transporter) and PA1505 (moaA2) were A-NO2- resistant. However, …

Snowy Plover Demography In Oregon, Eleanor Prindiville Gaines

Dissertations and Theses

A thorough understanding of demographic parameters and their contribution to overall population growth is fundamental to effective conservation of small populations, but this information is often lacking. The Pacific Coast population of the Western Snowy Plover (Charadrius nivosus nivosus) is listed as threatened and has been the target of long-term, multi-pronged management in Oregon. The Oregon coastal population has been intensively monitored since 1990, and over 80% of the population is color banded, but a comprehensive analysis of demographic parameters and the effect of management on vital rates and population growth has been unavailable until now. Here, the …

Splicing Dysregulation Contributes To The Pathogenicity Of Several F9 Exonic Point Variants, Upendra K. Katneni, Aaron Liss, David Holcomb, Nobuko H. Katagiri, Ryan Hunt, Haim Bar, Amra Ismail, Anton A. Komar, Chava Kimchi‐Sarfaty

Biological, Geological, and Environmental Faculty Publications

Background: Pre‐mRNA splicing is a complex process requiring the identification of donor site, acceptor site, and branch point site with an adjacent polypyrimidine tract sequence. Splicing is regulated by splicing regulatory elements (SREs) with both enhancer and suppressor functions. Variants located in exonic regions can impact splicing through dysregulation of native splice sites, SREs, and cryptic splice site activation. While splicing dysregulation is considered primary disease‐inducing mechanism of synonymous variants, its contribution toward disease phenotype of non‐synonymous variants is underappreciated. Methods: In this study, we analyzed 415 disease‐causing and 120 neutral F9 exonic point variants including both synonymous and non‐synonymous …

Transcription Of Nanos-1 In Zebrafish Embryos Is Not Affected By Bisphenol A: Evaluated Using Quantitative Real-Time Pcr, Bridget Babich, George Roba, Siti Sarah Safura, Kevin Callahan, Edward A. Freeman

Undergraduate External Publications

The presence of primordial germ cells (PGCs) is crucial for proper gonad formation in zebrafish (Danio rerio). The many aspects of PGC migration that allow these cells to reach the proper location at the gonadal ridge include receptors, ligands, germ plasm components, and internal maintenance of PGCs. Any one of these factors could be affected by endocrine-disrupting chemicals (EDCs), which have been shown to alter the directed migration of these cells during early embryonic development. Based on recent research wherein the EDC bisphenol A (BPA) inhibited normal PGC migration, we have used the same dose of BPA to …

Whole-Genome Analysis Of Halomonas Sp. Soap Lake #7 Reveals It Possesses Putative Mrp Antiporter Operon Groups 1 And 2, Melanie R. Mormile, Tiffany Edwards, Ronald L. Frank, Zachery Geurin, Julie Haendiges, Maria Hoffmann, Jesse Miller

Biological Sciences Faculty Research & Creative Works

The genus Halomonas possesses bacteria that are halophilic or halotolerant and exhibit a wide range of pH tolerance. The genome of Halomonas sp. Soap Lake #7 was sequenced to provide a better understanding of the mechanisms for salt and pH tolerance in this genus. The bacterium's genome was found to possess two complete multiple resistance and pH antiporter systems, Group 1 and Group 2. This is the first report of both multiple resistance and pH antiporter Groups 1 and 2 in the genome of a haloalkaliphilic bacterium.

Illustrated Guide To The Immature Lepidoptera On Oaks In Missouri, Robert Marquis, Steven Passoa, John Lill, James Whitfield, Josiane Le Corff, Rebecca Forkner, Valerie Passoa

Biology Department Faculty Works

Oak trees (Quercus spp.) dominate many forests in North America, and their diverse herbivore fauna is a major component of ecological biodiversity. Yet, identification guides for oak-feeding Lepidoptera in the eastern United States usually lack detailed larval morphological characteristics and pupal descriptions. This book describes the immature stages of common species of butterflies and moths (Lepidoptera) whose larvae are found on 10 species of oak (Quercus) in the eastern Missouri Ozarks (USA). Data were collected mainly as part of the Missouri Ozark Forest Ecosystem Project (MOFEP), a longterm study of the effects of harvesting regimes on forest structure and function. …

Metabolism Underlies Physiological Homeostasis In Drosophila, Omera B. Matoo, Cole R. Julick, Kristi Montooth

School of Biological Sciences: Faculty Publications

Organismal physiology emerges from metabolic pathways and subcellular structures like the mitochondria that can vary across development and among individuals. Here, we tested whether genetic variation at one level of physiology can be buffered at higher levels of biological organization during development by the inherent capacity for homeostasis in physiological systems. We found that the fundamental scaling relationship between mass and metabolic rate, as well as the oxidative capacity per mitochondria, changed significantly across development in the fruit fly Drosophila. However, mitochondrial respiration rate was maintained at similar levels across development. Furthermore, larvae clustered into two types—those that switched to …

Hdl Subclass Proteomic Analysis And Functional Implication Of Protein Dynamic Change During Hdl Maturation, Yuling Zhang, Scott M. Gordon, Hang Xi, Seungbum Choi, Merlin Abner Paz, Runlu Sun, William Yang, Jason Saredy, Mohsin Khan, Alan Thomas Remaley, Jing-Feng Wang, Xiaofeng Yang, Hong Wang

Saha Cardiovascular Research Center Faculty Publications

Recent clinical trials reported that increasing high-density lipoprotein-cholesterol (HDL-C) levels does not improve cardiovascular outcomes. We hypothesize that HDL proteome dynamics determine HDL cardioprotective functions. In this study, we characterized proteome profiles in HDL subclasses and established their functional connection. Mouse plasma was fractionized by fast protein liquid chromatography, examined for protein, cholesterial, phospholipid and trigliceride content. Small, medium and large (S/M/L)-HDL subclasseses were collected for proteomic analysis by mass spectrometry. Fifty-one HDL proteins (39 in S-HDL, 27 in M-HDL and 29 in L-HDL) were identified and grouped into 4 functional categories (lipid metabolism, immune response, coagulation, and others). Eleven …

Development Of A Pediatric Model Of Nafld In Neonatal Iberian Pigs, Gabriella Veronica Hernandez, Victoria Alice Smith, Morgan Coffin, Daniel Columbus, Matthew Burd, Kimberly Sprayberry, Mark Edwards, Daniel Peterson, Darin Bennett, Robert Fanter, Christopher Kitts, Michael La Frano, Margaret Rice, Douglas Burrin, Magdalena Maj, Rodrigo Manjarin

Master's Theses

The prevalence of non-alcoholic fatty liver disease (NAFLD) in children has increased over the past decades, creating a need for animal models that recapitulate the features of the pediatric disease. Iberian pigs have a leptin-resistant phenotype characterized by hyperleptinemia, hyperphagia, and extreme adipogenesis. We hypothesized that neonatal Iberian pigs fed a high fat high-fructose (HFF) diet will develop a pattern of liver injury resembling pediatric NAFLD. In addition, we sought to determine if a mixture of probiotics would prevent the disease. Animals were fed 1 of 4 diets containing (g/kg body weight × d) 0 g fructose, 11 g fat …

Astrogliosis In The Adult Zebrafish Olfactory Bulb During Repetitive Peripheral Damage, Jackson Scheib

Masters Theses

Traumatic brain injuries (TBIs), particularly if repetitive, cause massive disruptions of brain homeostasis, significant loss of neurons, and may result in death. Astrocytes are a type of cell that maintain brain homeostasis and neuronal health. Astrogliosis is a continuum of morphological and functional changes of astrocytes in response to damage. This can be neuroprotective or neurotoxic depending on the severity and type of injury. Global astrocyte scarring is typical of neurotoxic astrogliosis and is the source of secondary injury after TBIs. The adult zebrafish olfactory system is known for its capacity to recover from trauma, however, astrocytes in this system …

Size, Shape, And Sexual Dimorphism Of Island And Mainland Melanerpes Woodpeckers Of The Centurus Clade, Lee Michelle Silva Núñez

Loma Linda University Electronic Theses, Dissertations & Projects

Island ecosystems are widely studied as "natural laboratories” for biological change. Animals that colonize islands frequently exhibit differences from their mainland counterparts in morphology, physiology, and behavior. Some of the most striking features include changes in body size and shape, with extreme examples being dwarfism, gigantism, and flightlessness. These changes are generally driven by isolation and reduction in predators and competitors. The 10 woodpecker species belonging to the Centurus clade of genus Melanerpes are ideally suited to study evolutionary changes associated with island conditions because they include numerous populations restricted to islands, allowing comparisons among island and continent ecosystems. To …

Amplicon Sequencing Of 42 Nuclear Loci Supports Directional Gene Flow Between South Pacific Populations Of A Hydrothermal Vent Limpet, Sophie Plouviez, Abigail Leavitt Labella, David W. Weisrock, F. A. Bastiaan Von Meijenfeldt, Bernard Ball, Joseph E. Neigel, Cindy L. Van Dover

Biology Faculty Publications

In the past few decades, population genetics and phylogeographic studies have improved our knowledge of connectivity and population demography in marine environments. Studies of deep‐sea hydrothermal vent populations have identified barriers to gene flow, hybrid zones, and demographic events, such as historical population expansions and contractions. These deep‐sea studies, however, used few loci, which limit the amount of information they provided for coalescent analysis and thus our ability to confidently test complex population dynamics scenarios.

In this study, we investigated population structure, demographic history, and gene flow directionality among four Western Pacific hydrothermal vent populations of the vent limpet Lepetodrilus …

Rapid And Efficient Purification Of Drosophila Homeodomain Transcription Factors For Biophysical Characterization, Rachel Orlomoski, Aaron Bogle, Jeanmarie Loss, Rylee Simons, Jacqueline M. Dresch, Robert A. Drewell, Donald E. Spratt

Biology

Homeodomain transcription factors (HD TFs) are a large class of evolutionarily conserved DNA binding proteins that contain a basic 60-amino acid region required for binding to specific DNA sites. In Drosophila melanogaster, many of these HD TFs are expressed in the early embryo and control transcription of target genes in development through their interaction with cis-regulatory modules. Previous studies where some of the Drosophila HD TFs were purified required the use of strong denaturants (i.e. 6 M urea) and multiple chromatography columns, making the downstream biochemical examination of the isolated protein difficult. To circumvent these obstacles, we have developed a …

Dietary Plasticity In A Specialist Predator, The Gyrfalcon (Falco Rusticolus): New Insights Into Diet During Brood Rearing, Bryce W. Robinson, Travis L. Booms, Marc J. Bechard, David L. Anderson

Biology Faculty Publications and Presentations

Climate and landscape change are expected to affect species’ distributions and interactions, with potentially harmful consequences for specialist predators. Availability of optimal prey can affect reproductive success in raptors, especially in the Arctic, where dramatic differences in prey availability occur both within and between years. However, behavioral responses of dietary specialist, resident predators such as Gyrfalcons (Falco rusticolus) to changes in prey availability remain poorly understood. To improve understanding of how climate-driven changes in prey availability may affect diet of avian predators in the Arctic, we characterized Gyrfalcon diet on the Seward Peninsula, Alaska, in 2014 and 2015 …

Human Genotyping And An Experimental Model Reveal Npr-C As A Possible Contributor To Morbidity In Coarctation Of The Aorta, John F. Ladisa Jr., Aoy Tomita-Mitchell, Karl D. Stamm, Kathleen Bazan, Donna K. Mahnke, Mary A. Goetsch, Brandon Wegter, Jesse W. Gerringer, Kathryn Repp, Oleg Palygin, Adrian P. Zietara, Mary M. Krolikowski, Thomas J. Eddinger, Abdel A. Alli, Michael E. Mitchell

Biological Sciences Faculty Research and Publications

Coarctation of the aorta (CoA) is a common congenital cardiovascular (CV) defect characterized by a stenosis of the descending thoracic aorta. Treatment exists, but many patients develop hypertension (HTN). Identifying the cause of HTN is challenging because of patient variability (e.g., age, follow-up duration, severity) and concurrent CV abnormalities. Our objective was to conduct RNA sequencing of aortic tissue from humans with CoA to identify a candidate gene for mechanistic studies of arterial dysfunction in a rabbit model of CoA devoid of the variability seen with humans. We present the first known evidence of natriuretic peptide receptor C (NPR-C …

Protective Effects Of Novel Derivatives Of Vitamin D3 And Lumisterol Against Uvb-Induced Damage In Human Keratinocytes Involve Activation Of Nrf2 And P53 Defense Mechanisms, Anyamanee Chaiprasongsuk, Zorica Janjetovic, Tae-Kang Kim, Stuart G. Jarrett, John A. D'Orazio, Michael F. Holick, Edith K. Y. Tang, Robert C. Tuckey, Uraiwan Panich, Wei Li, Andrzej T. Slominski

Toxicology and Cancer Biology Faculty Publications

We tested whether novel CYP11A1-derived vitamin D₃- and lumisterol-hydroxyderivatives, including 1,25(OH)₂D₃, 20(OH)D₃, 1,20(OH)₂D₃, 20,23(OH)₂D₃, 1,20,23(OH)₃D₃, lumisterol, 20(OH)L₃, 22(OH)L₃, 20,22(OH)₂L₃, and 24(OH)L₃, can protect against UVB-induced damage in human epidermal keratinocytes. Cells were treated with above compounds for 24 h, then subjected to UVB irradiation at UVB doses of 25, 50, 75, or 200 mJ/cm², and then examined for oxidant formation, proliferation, DNA damage, and the expression of genes …

An Evaluation Of The Medicinal Plants Of Andros Island, Bahamas, Vivian Pedrozo

Theses and Dissertations

The earliest civilizations have been using plants as their foundation for healing and medicinal traditions for thousands of years. The use of plant medicinals, more commonly known as “bush medicine” on Andros Island, has been rapidly decreasing due an increased presence of western medicine and increased population pressures from urbanization that are threatening local biodiversity hotspots. Ethnobotany is not only important from a conservation standpoint but is also used to preserve traditional knowledge of herbal medicinals and applications, the people of Andros continue to rely on bush medicine, mainly in the form of teas to help manage health related problems. …

Qualitative Analysis Of A Modified Leslie-Gower Predator-Prey Model With Weak Allee Effect Ii, Manoj K. Singh, B. S. Bhadauria

Applications and Applied Mathematics: An International Journal (AAM)

The article aims to study a modified Leslie-Gower predator-prey model with Allee effect II, affecting the functional response with the assumption that the extent to which the environment provides protection to both predator and prey is the same. The model has been studied analytically as well as numerically, including stability and bifurcation analysis. Compared with the predator-prey model without Allee effect, it is found that the weak Allee effect II can bring rich and complicated dynamics, such as the model undergoes to a series of bifurcations (Homoclinic, Hopf, Saddle-node and Bogdanov-Takens). The existence of Hopf bifurcation has been shown for …

The Development Of Diving Capabilities In Weddell Seal (Leptonychotes Weddellii) Pups Throughout Early Ontogeny, Emma Weitzner

Master's Theses

Weddell seals (Leptonychotes weddellii) are among the deepest diving pinnipeds (i.e., seals, sea lions, and walrus) and one of the best studied marine mammals in the world; as such, these seals are considered a model species for the study of diving physiology and behavior. Adult Weddell seal dive physiology is rather comprehensively understood, yet previous research has excluded an examination of pups’ initial independent diving attempts, beginning instead with the diving capabilities of near-weaning individuals at four to five weeks of age. This is beyond the point many pups have attempted their first independent dives; pups begin to …

Closed Form Solutions Of Unsteady Two Fluid Flow In A Tube, J. Liu, C. Y. Wang

Applications and Applied Mathematics: An International Journal (AAM)

Exact closed form solutions for the mathematical model of unsteady two fluid flow in a circular tube are presented. The pressure gradient is assumed to be oscillatory or exponentially increasing or decreasing in time. The instantaneous velocity prof iles and flow rates depend on the size of the core fluid, the density ratio, the viscosity ratio, and a parameter (e.g. the Womersley number) quantifying time changes. Applications include blood flow in small vessels.

Opportunities For Self-Evaluation Increase Student Calibration In An Introductory Biology Course, Jennifer L. Osterhage, Ellen Usher, Trisha A. Douin, William M. Bailey

Biology Faculty Publications

Accurate self-evaluation is critical for learning. Calibration describes the relationship between learners’ perception of their performance and their actual performance on a task. Here, we describe two studies aimed at assessing and improving student calibration in a first-semester introductory biology course at a 4-year public institution. Study 1 investigated students’ (n = 310) calibration (the difference between estimated and actual exam performance) across one semester. Students were significantly miscalibrated for the first exam: their predicted scores were, on average, significantly higher than their actual scores. The lowest-performing students had the most inaccurate estimates. Calibration improved with each exam. By …

Availability Of Microtrash Materials And Selectivity By California Condors, Marie G. Solis

Biological Sciences

California condors consume non-food items, including anthropogenic waste, and provision it to their young. Consuming “microtrash” can cause mortality, especially in nestlings. There are several hypotheses explaining why condors might consume microtrash. These hypotheses assume condors exhibit a preference for the type of material. Therefore, we test the assumption that when California condors take microtrash, they display material selectivity. We did this by sampling microtrash from roadside pullouts in the Los Padres National Forest. Those samples were compared to condor necropsy and nest microtrash data, categorized by material type: glass, plastic, metal, and other. We find that in our analysis …

Dna And Protein Sequence Analysis Of Neuronal Markers Neuronal Nuclei (Neun) And Doublecortin (Dcx) In The Northern Pacific Rattlesnake (Crotalus Oreganus) And Western Fence Lizard (Sceloporus Occidentalis)., Brett M. Vassar

Master's Theses

Neuronal Nuclei (NeuN) and Doublecortin (DCX) are neuron specific proteins that are used in histological studies of brain structure in a variety of vertebrate taxa.Antibodies against NeuN (anti-NeuN) bind to the Fox-3 protein, an RNA binding protein common in mature neurons. Anti-DCX labels a microtubule-associated protein expressed in actively dividing neural progenitor cells and migrating neurons. The DCX gene encodes a protein that is well conserved across mammalian, avian, and a few reptilian species, therefore anti-DCX staining has been used successfully across a range of vertebrate taxa. Successful neuronal staining using anti-NeuN has been demonstrated in mammals, birds, and the …

Variation In Morphology, Diet, And Venom Composition In Crotalus Pyrrhus (Cope 1867), Chip Cochran

Loma Linda University Electronic Theses, Dissertations & Projects

Because rattlesnakes rely heavily on their venom for predation and defense, we can expect selection pressures from several sources to act on its composition, including, ontogeny, sex, and environmental variation. In this dissertation, I summarize the results of four studies of the southwestern speckled rattlesnake (Crotalus pyrrhus). First, I describe two cases of envenomation at separate Arizona localities (Tinajas Altas Mountains, Yuma County, and Phoenix Mountains, Maricopa County). Both patients experienced swelling, but neither demonstrated coagulopathy, thrombocytopenia, or hypofibrinogenemia. The latter patient required amputation of the distal portion of his middle finger. I also investigated variation in morphology, diet, and …

Determining Heavy Metal Concentrations In The Blueband Hermit Crab (Pagurus Samuelis), Tyler Dos Santos

Loma Linda University Electronic Theses, Dissertations & Projects

Although heavy metal concentrations fluctuate naturally in the environment, anthropogenic sources of heavy metal concentrations can mask and override natural fluctuations. Large anthropogenic metal concentrations can lead to deleterious effects in organisms, such as malformation or death. Indicator species can be used to determine environmental concentrations of certain metals to help understand the impacts of anthropogenic sources of heavy metal concentrations. The aim of this study was to determine if Pagurus samuelis may play a role as an indicator species by analyzing specimens for Cadmium (Cd), Chromium (Cr), Copper (Cu), Lead (Pb), and Zinc (Zn) found in tidepool seawater in …

Antioxidant Capacity And Anoxia-Tolerance In Austrofundulus Limnaeus Embryos, Josiah Tad Wagner, Michael J. Knapp, Jason E. Podrabsky

Biology Faculty Publications and Presentations

Embryos of Austrofundulus limnaeus can tolerate extreme environmental stresses by entering into a state of metabolic and developmental arrest known as diapause. Oxidative stress is ubiquitous in aerobic organisms and the unique biology and ecology of A. limnaeus likely results in frequent and repeated exposures to oxidative stress during development. Antioxidant capacity of A. limnaeus was explored during development by measuring antioxidant capacity due to small molecules and several enzymatic antioxidant systems. Diapause II embryos can survive for several days in 1% hydrogen peroxide without indications of negative effects. Surprisingly, both small and large molecule antioxidant systems are highest during …

Effects Of Life-Long Wheel Running Behavior On Plantar Flexor Contractile Properties, Alexander Nicholas Beechko

Electronic Theses, Projects, and Dissertations

Aging in skeletal muscle is characterized by a loss in muscular performance. This is in part related to the direct loss of muscle mass due to senescence, known as sarcopenia. With age, skeletal muscles lose force production, contractile speed, and power production. The force velocity relationship of muscle is a product of force production and contraction speed, both of which decline with age; however, the mechanisms and trajectory of this decline are not well understood. Exercise has positive effects on muscle, and thus may assist in maintaining performance in old age. However, few long-term studies have been performed to examine …

Invertebrate Diversity Of Ponds Within Gremel Wildlife Sanctuary And Amboy Marsh, Dalton Howard, Madison Lape

Celebration of Learning

This project tested the water quality of different ponds and used macroinvertebrates as the overall indicator. The invertebrates give us a lot of knowledge about the health of the ecosystem and possible pollutants that could be harming the environments.

Do Stands Of Native Trees Harbor Different Invasive Species Than Stands Of Planted Pine?, Carly Mccameron, John Mccarthy, Dr. Kevin Geedey

Celebration of Learning

The most outstanding invasive species that can be found at Augustana’s Green Wing Environmental Laboratory are honeysuckle, buckthorn, multiflora rose, garlic mustard, autumn olive, and oriental bittersweet. These plants are not only disrupting the ecosystem at Green Wing, but they are doing it all over the country. The result of their disruption is that they have taken over entire habitats and left natural species with no way to compete for survival. To study this we used the line-point method as well as other forms of data collection to compare a non-native pine tree habitat to an area dominated by native …