Biology Commons^™

Sea Robin (Triglidae) Neurocranium, David W. Kerstetter, Sarah Kennedy, Kathryn Kuruoglu

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Hypoxia-Inducible Gene Domain 1 Proteins In Yeast Mitochondria Protect Against Proton Leak Through Complex Iv, Ngoc H. Hoang, Vera Strogolova, Jaramys J. Mosley, Rosemary A. Stuart, Jonathan Hosler

Biological Sciences Faculty Research and Publications

Hypoxia-inducible gene domain 1 (HIGD1) proteins are small integral membrane proteins, conserved from bacteria to humans, that associate with oxidative phosphorylation supercomplexes. Using yeast as a model organism, we have shown previously that its two HIGD1 proteins, Rcf1 and Rcf2, are required for the generation and maintenance of a normal membrane potential (ΔΨ) across the inner mitochondrial membrane (IMM). We postulated that the lower ΔΨ observed in the absence of the HIGD1 proteins may be due to decreased proton pumping by complex IV (CIV) or enhanced leak of protons across the IMM. Here we measured the ΔΨ generated by complex …

Effects Of Photopollution On Circadian Activity Rhythms, Aaron Schimer, Ting Liu, Elyse A. Bolterstein, Seth Magle, Caleb Gallemore, Elisabeth Dinello

Faculty Research and Creative Activities Symposium

Many aspects of organismal behavior and metabolism are modulated by biological clocks that oscillate with 24-hour (circadian) rhythms. These circadian clocks synchronize to environmental cues, such as cycles of light and dark, and allow organisms to anticipate changing environmental conditions and make use of temporal niches. The circadian clocks’ function, as well as the biological processes they modulate, can be altered by excess artificial lighting (photopollution). Photopollution levels in Chicago are some of the highest in the world, making it an ideal location to investigate the ecological and health impacts of nighttime light. While photopollution’s effects on specific species (e.g. …

Helping Blind And Visually Impaired Children To Feel The World Around Them: My Life Comes Full Circle, Frederick Prete

Faculty Research and Creative Activities Symposium

I fell in love with Biology as a young boy. Although originally intending to enter the ministry, once I stepped onto the Luther College campus at 18 years old, I thought, perhaps, I would instead pursue an undergraduate degree in biology and, ultimately, an M.D. However, as I entered the book store, I happened to pick up an anthology entitled, The Pre-Socratic Philosophers. I became enthralled and could not put it down. Thus started a many year intellectual love affair that took me on a journey through all writings philosophical. I landed, eventually, at the Gujarat Vidyapith in Ahmedabad, India …

Modeling Aging And Degenerative Disease In Dna Repair-Deficient Drosophila, Elyse A. Bolterstein, Aaron Schimer

Faculty Research and Creative Activities Symposium

As cells age, they accumulate DNA damage that can lead to genomic instability, mutations, and cancer. DNA repair proteins, such as Werner (WRN), have essential roles preventing and repairing DNA damage caused by stress from the environment, DNA replication errors, and free radicals. In humans, mutations in WRN lead to Werner syndrome (WS), a heritable disease characterized by patients’ early onset of aging, increased risk of cancer and other age-related pathologies. My lab uses Drosophila mutant in the fly homolog of WRN, WRNexo, to elucidate its role in DNA repair and aging. While human WRN has both an exonuclease and …

Inhibitory Effect Of 6-Shogaol On Viability Of Tumor Cell Lines, Shubhangee M. Mungre

Faculty Research and Creative Activities Symposium

Cancer remains a leading cause of death in the United States. Although chemotherapy and radiation therapy are being currently used to treat cancer, they have from detrimental side effects. Hence, several studies have focused on natural herbs and compounds as alternate therapies. Zingiber officinale, commonly known as ginger, is a root that has been used for centuries in food and in medicine due to its an anti-diabetic, anti-inflammatory anti-apoptotic, and anti- carcinogenic properties. Two of the nonvolatile compounds present in ginger, 6-gingerol and 6- shogaol, are reported to show protective effect against diabetes, cardiac and hepatic disorders. We tested the …

Coloration And The Evolution Of Live Birth, Beth Reinke, Kirsty J. Macleod

Faculty Research and Creative Activities Symposium

Organisms have a finite amount of energy with which to invest in survival, growth, and reproduction. Reproductive strategies can range from those that require minimal energy to produce eggs (oviparity) that then develop unassisted, those that require some energy to produce eggs that then hatch internally (ovoviviparity), and those that require significant energy to fully develop internally before birth (viviparity). Females of species that invest large amounts of energy to give birth to live young (viviparous species) may thus have more to lose in choosing low-quality mates than females of species that lay eggs (oviparous species). These females may therefore …

Whole Plastome Sequencing Within Silene Section Psammophilae Reveals Mainland Hybridization And Divergence With The Balearic Island Populations, José Carlos Del Valle, Inés Casimiro-Soriguer, Mᵃ Luisa Buide, Eduardo Narbona, Justen B. Whittall

Biology

Reconstructing the phylogenetic relationships within Caryophyllaceae tribe Sileneae has been obscured by hybridization and incomplete lineage sorting. Silene is the largest genus in the Caryophyllaceae, and unraveling its evolutionary history has been particularly challenging. In order to infer the phylogenetic relationships among the five species in Silene section Psammophilae, we have performed a genome skimming approach to acquire the complete plastid genome (cpDNA), nuclear ribosomal cistron (nrDNA), and partial mitochondrial genome (mtDNA). We have included 26 populations, representing the range of each species' distribution. This section includes five morphologically similar species endemic to the Iberian Peninsula and Balearic Islands …

Burrowing Owl (Athene Cunicularia) Cranium, Dennis A. Mandi, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

New Insights Into Anhydrobiosis Using Cellular Dielectrophoresis-Based Characterization, Mohamed Z. Rashed, Clinton J. Belott, Brett R. Janis, Michael Menze, Stuart J. Williams

Faculty and Staff Scholarship

Late embryogenesis abundant (LEA) proteins are found in desiccation-tolerant species from all domains of life. Despite several decades of investigation, the molecular mechanisms by which LEA proteins confer desiccation tolerance are still unclear. In this study, dielectrophoresis (DEP) was used to determine the electrical properties of Drosophila melanogaster (Kc167) cells ectopically expressing LEA proteins from the anhydrobiotic brine shrimp, Artemia franciscana. Dielectrophoresis-based characterization data demonstrate that the expression of two different LEA proteins, AfrLEA3m and AfrLEA6, increases cytoplasmic conductivity of Kc167 cells to a similar extent above control values. The impact on cytoplasmic conductivity was surprising, given …

Loci Encoding Compounds Potentially Active Against Drug-Resistant Pathogens Amidst A Decreasing Pool Of Novel Antibiotics, Joseph Basalla, Payel Chatterjee, Elizabeth Burgess, Mahnur Khan, Emily Verbrugge, Daniel D. Wiegmann, John J. Lipuma, Hans Wildschutte

Biological Sciences Faculty Publications

Since the discovery of penicillin, microbes have been a source of antibiotics that inhibit the growth of pathogens. However, with the evolution of multidrug-resistant (MDR) strains, it remains unclear if there is an abundant or limited supply of natural products to be discovered that are effective against MDR isolates. To identify strains that are antagonistic to pathogens, we examined a set of 471 globally derived environmental strains (env-Ps) for activity against a panel of 65 pathogens including spp., spp., , and spp. isolated from the lungs of cystic fibrosis (CF) patients. From more than 30,000 competitive interactions, 1,530 individual inhibitory …

Stability Of Petal Color Polymorphism: The Significance Of Anthocyanin Accumulation In Photosynthetic Tissues, José Carlos Del Valle, Cristina Alcalde-Eon, Mª Teresa Escribano-Bailón, Mª Luisa Buide, Justen B. Whittall, Eduardo Narbona

Biology

Background: Anthocyanins are the primary source of colour in flowers and also accumulate in vegetative tissues, where they have multiple protective roles traditionally attributed to early compounds of the metabolic pathway (flavonols, flavones, etc.). Petal-specific loss of anthocyanins in petals allows plants to escape from the negative pleiotropic effects of flavonoid and anthocyanins loss in vegetative organs, where they perform a plethora of essential functions. Herein, we investigate the degree of pleiotropy at the biochemical scale in a pink-white flower colour polymorphism in the shore campion, Silene littorea. We report the frequencies of pink and white individuals across 21 populations …

Dynamics Of Avian Elevational Ranges Reveal Hidden Evolutionary Forces, Chauncey R. Gadek

Biology ETDs

The distribution of life across the Andes mountains reflects historical elevational-range contraction and expansion. Whereas contraction implies specialization, expansion requires overcoming hidden barriers. Three eco-evolutionary phenomena may drive patterns in rates of elevational range evolution: (1) The Dobzhansky-MacArthur Phenomenon (DMP) predicts lower rates of upward expansion with harsher physical conditions, while downward expansion increases with lower diversity; (2) the evolutionary tendency toward specialization predicts contraction increases when ranges are broad; and (3) natural selection for respiratory performance could suppress expansion across mid-elevations due to gene-environment mismatch. We modeled elevational range shifts of Neotropical landbirds. Contrary to the DMP, upward expansion …

Testing Predictability Of Disease Outbreaks With A Simple Model Of Pathogen Biogeography, Tad Dallas, Colin J. Carlson, Timothée Poisot

Faculty Publications

Predicting disease emergence and outbreak events is a critical task for public health professionals and epidemiologists. Advances in global disease surveillance are increasingly generating datasets that are worth more than their component parts for prediction-oriented work. Here, we use a trait-free approach which leverages information on the global community of human infectious diseases to predict the biogeography of pathogens through time. Our approach takes pairwise dissimilarities between countries’ pathogen communities and pathogens’ geographical distributions and uses these to predict country–pathogen associations. We compare the success rates of our model for predicting pathogen outbreak, emergence and re-emergence potential as a function …

Structure Of The 5′ Untranslated Region Of Enteroviral Genomic Rna, Bejan Mahmud, Christopher M. Horn, William E. Tapprich

Biology Faculty Publications

Enteroviral RNA genomes share a long, highly structured 5= untranslated region (5= UTR) containing a type I internal ribosome entry site (IRES). The 5= UTR is composed of stably folded RNA domains connected by unstructured RNA regions. Proper folding and functioning of the 5= UTR underlies the efficiency of viral replication and also determines viral virulence. We have characterized the structure of 5= UTR genomic RNA from coxsackievirus B3 using selective 2=-hydroxyl acylation analyzed by primer extension (SHAPE) and base-specific chemical probes in solution. Our results revealed novel structural features, including realignment of major domains, newly identified long-range interactions, and …

Collaborative Proposal: Msa: Predicting The Effects Of Nitrogen Deposition On The Soil Carbon Sink With A Continental-Scale Experiment, Bonnie G. Waring, John M. Stark

Funded Research Records

No abstract provided.

Isotopic Palaeoecology Of Northern Great Plains Bison During The Holocene, Gaimi Davies, Blake Mccann, Jay Sturdevant, Fern Swenson, Igor V. Ovtchinnikov

Biology Faculty Publications

Bison (Bison bison) are one of the few terrestrial megafauna to survive the transition into the Holocene and provide a unique opportunity to study a species on a broad spatiotemporal scale. Today, bison are primarily managed in small and isolated herds with little known about their ancestral ecology. We studied the carbon and nitrogen isotopes of Northern Great Plains bison from the terminal Pleistocene and throughout the Holocene to gain insight into their paleoecology. This time span is contemporary with the first population bottleneck experienced by bison at the end of the Pleistocene and includes the second bottleneck …

Investigating Among-Individual Growth Heterogeneity In Longleaf Pine: Advancing Dendrochronological Approaches, Jamie E. Munn

USF Tampa Graduate Theses and Dissertations

Within a population, individuals frequently differ in the rate at which they grow, and this rate can be impacted by both genetic differences and abiotic factors. Often, dendrochronology is used to elucidate growth trends based on climate or other factors. This dissertation explores new statistical approaches to dendrochronological research.

First, I created a chronology for a population of longleaf pine (Pinus palustris P. Mill.) individuals in a southwest Florida sandhill community. I then used generalized linear mixed models to investigate the effects of fire frequency, year, tree age and size, and elevation on variation in radial growth heterogeneity. I then …

The Adaptations Of The Sulfur-Oxidizing, Gammaproteobacterium "Candidatus Endoriftia Persephone", Endosymbiont Of The Giant Tubeworm Riftia Pachyptila, To Hydrothermal Vent Habitat Heterogeneity, Juliana M. Leonard

USF Tampa Graduate Theses and Dissertations

The siboglinid tubeworm Riftia pachyptila is a dominant member of the deep-sea megafauna where seawater and hydrothermal vent (HTV) effluent interface and mix. It is one of the fastest growing invertebrates on land or in the sea. It does not have a digestive tract (e.g. mouth, gut, or anus), and is completely dependent on its sulfur-oxidizing endosymbiont, the Gammaproteobacterium “Candidatus Endoriftia persephone” for its nutritional requirements. This association was the first and is the most well studied among chemolithoautotrophic symbioses. “Ca. E. persephone” is a chemolithoautotrophic bacterium that oxidizes sulfide as an electron donor for energy, reduces oxygen as a …

Investigation Of Molecular Mechanisms Underlying Tetracycline Resistance In Thermophilic Campylobacter Spp. Suggests That Previous Reports Of Tet(A)-Mediated Resistance In These Bacteria Are Premature, Caoimhe Lynch, Kayleigh Hawkins, Helen Lynch, John Egan, Declan Bolton, Aidan Coffey, Brigid Lucey

Department of Biological Sciences Publications

The true prevalence of tet(A), which codes for a tetracycline efflux pump, in thermophilic Camplyobacter spp. requires clarification after reports emerged in Iran (2014) and Kenya (2016) of the novel detection of tet(A) in Campylobacter. During our investigation of antibiotic resistance mechanisms in a sample of Irish thermophilic Campylobacter broiler isolates, it was determined that 100% of tetracycline-resistant isolates (n = 119) harboured tet(O). Accessory tetracycline-resistance mechanisms were considered as tetracycline minimum inhibitory concentrations ranged from 4 to ≥ 64 mg/L. Primers previously reported for the detection of tet(A) in Campylobacter failed to produce an amplicon using a positive control …

Scythes, Sickles And Other Blades: Defining The Diversity Of Pectoral Fin Morphotypes In Pachycormiformes, Jeff J. Liston, Anthony E. Maltese, Paul H. Lambers, Dominique Delsate, William E.H. Harcourt-Smith, Anneke H. Van Heteren

Publications and Research

The traditional terminology of ‘scythe’ or ‘sickle’ shaped is observed to be flawed as an effective descriptor for pectoral fin shape in pachycormids. The diversity of pachycormid pectoral fin shapes is assessed across the 14 recognised genera that preserve complete pectoral fins, and improved terms are defined to more effectively describe their form, supported by anatomical observation and aspect ratio analysis of individual fins, and corroborated by landmark analysis. Three clear and distinct pectoral fin structural morphotypes emerge (falceform, gladiform, falcataform), reflecting a diversity of pachycormid lifestyles throughout the Mesozoic, from agile pursuit predator to slow-cruising suspension feeder.

Liver Fluke In Irish Sheep: Prevalence And Associations With Management Practices And Co-Infection With Rumen Fluke, Maria Pia Munita, Rosemary Rea, Et. Al.

Department of Biological Sciences Publications

Background

The present study aimed to identify the national prevalence of Fasciola hepatica in Irish sheep and to conduct a risk analysis assessment based on management and treatment practices in participating flocks. Also, co-infection with rumen fluke was quantified and its association with liver fluke and management practices was assessed.

Methods

A total of 305 sheep flocks were selected ensuring even national representation of the sheep population. Participating farms were asked to complete a survey questionnaire on farm management practices and submit faecal samples during the winter of 2014–2015. Pooled faecal samples were analysed for the presence of F. hepatica …

Immune Gene Diversity And Populations Structure Of Reticulated Flatwoods Salamander (Ambystoma Bishopi), Steven Tyler Williams

LSU Master's Theses

Reticulated flatwoods salamander (Ambystoma bishopi) populations began decreasing dramatically in the late 1900s. Contemporary populations are small, isolated, and may be susceptible to inbreeding and reduced adaptive potential because of low genetic variation. Genetic variation at immune genes is especially important as it influences disease susceptibility and adaptation to emerging infectious pathogens, a central conservation concern for declining amphibians. Connectivity between isolated populations is also vital to maintain genetic diversity and avoid inbreeding. I collected tissue samples from across the extant range of this salamander to examine genetic variation and population structure in: immune genes broadly (immunome), the …

Gene Expression Of Endangered Coral (Orbicella Spp.) In Flower Garden Banks National Marine Sanctuary After Hurricane Harvey, Rachel M. Wright, Adrienne M.S. Correa, Lucinda A. Quigley, Lory Z. Santiago-Vázquez, Kathryn E.F. Shamberger, Sarah W. Davies

Biological Sciences: Faculty Publications

About 190 km south of the Texas–Louisiana border, the East and West Flower Garden Banks (FGB) have maintained > 50% coral cover with infrequent and minor incidents of disease or bleaching since monitoring began in the 1970s. However, a mortality event, affecting 5.6 ha (2.6% of the area) of the East FGB, occurred in late July 2016 and coincided with storm-generated freshwater runoff extending offshore and over the reef system. To capture the immediate effects of storm-driven freshwater runoff on coral and symbiont physiology, we leveraged the heavy rainfall associated with Hurricane Harvey in late August 2017 by sampling FGB corals …

Aniseed 2019: 4d Exploration Of Genetic Data For An Extended Range Of Tunicates, J. Dardaillon, D. Dauga, P. Simion, E. Faure, T. A. Onuma, M. B. Debiasse, A. Louis, K. R. Nitta, M. Naville, L. Besnardeau, W. Reeves, K. Wang, M. Fagotto, M. Guéroult-Bellone, S. Fujiwara, R. Dumollard, M. Veeman, J.-N. Volff, H. Roest Crollius, E. Douzery, J. F. Ryan, Bradley Justin Davidson , '91, H. Nishida, C. Dantec, P. Lemaire

Biology Faculty Works

ANISEED (https://www.aniseed.cnrs.fr) is the main model organism database for the worldwide community of scientists working on tunicates, the vertebrate sister-group. Information provided for each species includes functionally-annotated gene and transcript models with orthology relationships within tunicates, and with echinoderms, cephalochordates and vertebrates. Beyond genes the system describes other genetic elements, including repeated elements and cis-regulatory modules. Gene expression profiles for several thousand genes are formalized in both wild-type and experimentally-manipulated conditions, using formal anatomical ontologies. These data can be explored through three complementary types of browsers, each offering a different view-point. A developmental browser summarizes the information in a gene- …

Morphology, Molecular Characterization And Habitat Preference Of Harmful Benthic Dinoflagellate Gambierdiscus (Dinophyceae) In Malaysia, Nurin Izzati Mustapa

Student Works (2020-2029)

Ciguatera fish poisoning (CFP) is a type of illness that causes human intoxication after consuming contaminated coral fishes. The neurotoxins, ciguatoxins, are produced by species of Gambierdiscus, one of the harmful benthic dinoflagellates. Identification of harmful dinoflagellate species is important to gain further insights into the global dispersion. In this study, morphological characteristics of species in the genus Gambierdiscus and their habitat preferences were investigated. Field sampling was undertaken at Pulau Rawa, Terengganu and Pulau Sibu, Johor. Single cells of Gambierdiscus were isolated and clonal cultures were established. Morphology of Gambierdiscus was examined by using light and scanning electron microscopes. …

The Impact Of Anthropogenic Noise On Fish Behavior, Communication, And Development, Julie Butler

LSU Doctoral Dissertations

Noise pollution is pervasive to nearly all aquatic and terrestrial ecosystems and was labeled a pollutant of global concern by the World Health Organization in 2011. In the past few decades, underwater ambient noise levels have risen almost 30 dB SPL re: 1 µPa in the frequency range that most fish produce and detect acoustic stimuli due to rises in shipping, oil exploration, and pile driving. Changes to the natural soundscape can impact almost all aspects of an animal’s life. My dissertation research takes an integrative, whole-animal approach to examining how increased background noise impacts fish behavior, physiology, development, and …

Ritualized Display Of A Leaf: A Putative Agonistic Signal In Both Sexes Of Tropical Bird, L. M. Kiere, Troy G. Murphy, A. Garcia-Muñoz, M. Osorio-Beristain

Biology Faculty Research

Birds use many different signaling modalities (e.g. vocalizations, displays) to transmit information about their motivation to defend valuable resources. A handful of taxa use "props", inedible objects scavenged from the environment, in signaling. Several species of motmots (Coraciiformes) hold a leaf in their bill in a display that observational evidence suggests is agonistic. We used a simulated intruder experiment to test this display's agonistic signaling function using data from both members of pairs of russet-crowned motmots (Momotus mexicanus). If the display is agonistic, we expected territory-holding pairs to respond more strongly toward taxidermic mounts displaying a leaf. Our results showed …

Collaboration And Inquiry For The Science Classroom, Jessica Amacher, Sarah O'Leary-Driscoll, Crystal Randall

Faculty Publications & Research

Science is a collaborative endeavor, where most of the significantly influential advances are achieved by groups of scientists working together across varying institutions and disciplines. To reflect this, we should offer opportunities for our students to learn, research, and communicate with their peers. In this workshop, we share models that we have found successful for designing opportunities, as well as ideas for topics that promote real world application and cross disciplinary work for students, drawing from our experiences with the International Student Science Fair and other international strategies. We will help interested teachers in developing their own working groups to …

Thermal Limits Of Summer-Collected Pardosa Wolf Spiders (Araneae: Lycosidae) From The Yukon Territory And Greenland, Susan E. Anthony, Christopher M. Buddle, Toke T. Høye, Brent J. Sinclair

Biology Publications

Arctic and sub-Arctic terrestrial ectotherms contend with large daily and seasonal temperature ranges. However, there are few data available on the thermal biology of these high-latitude species, especially arachnids. We determined the lower and upper thermal limits of seven species of wolf spider from the genus Pardosa (Araneae: Lycosidae) collected in summer from the Yukon Territory (Canada) and Southern Greenland. None of these species survived freezing, and while spiderlings appeared freeze-avoidant, surviving to their supercooling point (SCP, the temperature at which they spontaneously freeze), chill-susceptible adults and juveniles died at temperatures above their SCP. The critical thermal minimum (CTmin, the …