Biology Commons^™

Ancient Origins Of A Diverse Stygofaunal Group: The Australian Bathynellidae (Crustacea), Giulia Perina

Theses: Doctorates and Masters

Research on subterranean fauna on all continents has highlighted often high levels of endemism, for both troglobionts (terrestrial subterranean organisms) and stygobionts (organisms living in groundwater). In Australia, particularly in the arid zones of Western Australia, a rich hypogean assemblage has been discovered in the past few decades, largely due to surveys required as part of environmental impact assessments for, and imposed conditions on, mining operations. Bathynellidae (Crustacea) are part of the stygofaunal community, but to-date they are poorly understood, mainly because their conservative morphology, small size and delicate exoskeleton make their dissection, observation and study very difficult. Additionally, the …

Role Of Daxx As A Predictive Biomarker In Breast Cancer, Michelle Lucia Fernandez

Master's Theses

Breast cancer is the most commonly diagnosed form of cancer in women, besides skin cancer, and second only to lung cancer for cause of mortality. It is divided into three subtypes, depending on different molecular or pathologic characteristics, including estrogen or progesterone receptor-positive (ER/PR+), human epidermal growth factor receptor-2-positive (HER2+) and triple negative breast cancer (TNBC). There are several therapies used to target these subtypes, but there is still a chance that the cancer will recur into a more aggressive, resistant form even if the therapies were successful before. This recurrence is believed to be due to the Cancer Stem …

Biogeographical Patterns Of Tunicates Utilizing Eelgrass As Substrate In The Western North Atlantic Between 39° And 47° North Latitude (New Jersey To Newfoundland), Mary R. Carman, Philip D. Colarusso, Hilary A. Neckles, Paul Bologna, Scott Caines, John D.P. Davidson, N. Tay Evans, Sophia E. Fox, David W. Grunden, Sarah Hoffman, Kevin C.K. Ma, Kyle Matheson, Cynthia H. Mckenzie, Eric P. Nelson, Holly Plaisted, Emily Reddington, Stephen Schott, Melisa C. Wong

Department of Biology Faculty Scholarship and Creative Works

Colonization of eelgrass (Zostera marina L.) by tunicates can lead to reduced plant growth and survival. Several of the tunicate species that are found on eelgrass in the northwest Atlantic are highly aggressive colonizers, and range expansions are predicted in association with climate-change induced increases in seawater temperature. In 2017, we surveyed tunicates within eelgrass meadows at 33 sites from New Jersey to Newfoundland. Eight tunicate species were identified colonizing eelgrass, of which four were non-native and one was cryptogenic. The most common species (Botrylloides violaceus and Botryllus schlosseri) occurred from New York to Atlantic Canada. Tunicate faunas attached to …

Variations In The Dragonfly Microbiome Through Life Stages And Its Ability To Harbor Antibiotic Resistant Bacteria, Sarah Russell

Electronic Theses and Dissertations

Juvenile dragonflies (nymphs) may possess the ability to pass their microbiome to the adult life stage through metamorphosis. If this is so, the environment in which the nymph develops may have an effect on the adult microbiome. In this study, the gut microbiomes of 13 species of dragonfly were compared across life stages and when collected from environments at different levels of urbanization. The gut of each dragonfly was removed, DNA extracted, and a portion of the bacterial 16S rRNA gene amplified and sequenced. Gut suspensions were also plated on antibiotic amended plates to determine the potential for dragonflies to …

Influence Of Shaded Conditions On Development Of Asteraceae Species Native To Kansas, Aline Rodrigues De Queiroz

Master's Theses or Doctor of Nursing Practice

to the heterogeneity of habitats, all plants are exposed to at least some degree of shade during their lifetime. Reduced light intensity, drops in R:FR ratio, and limited blue light are cues for plants to perceive competition; the shade avoidance syndrome (SAS) is common for grassland species while shade tolerance (ST) is common for forest species when competition is perceived. SAS is characterized by elongation of stems and petioles, reduced branches, decreased leaf area, decreased shoot biomass, and increased number of ramets. ST is characterized by little elongation of stems and petioles, high chlorophyll content and high chlorophyll a/b ratio …

Prion Protein Gene Polymorphisms In The Alpha-Helical Region In Feral Pigs From Texas, Maram Alsmady

Master's Theses or Doctor of Nursing Practice

Prion diseases are a group of infectious, incurable, fatal neurodegenerative disorders, including scrapie in sheep, chronic wasting disease in deer, and Creutzfeldt-Jakob disease (CJD) in humans. A key event in prion disease is the conformational transition of the cellular prion protein (PrP^C) into the pathogenic isoform (PrP^SC). Prion disease occurrence depends mainly on the interaction between the host prion protein (PrP^C) and the prion strain (PrP^SC). It was hypothesized that prion gene polymorphisms correlate with an organism’s susceptibility to prion disease, which may be related to the overall stability of the α-helical …

Greening Rates And Photosynthetic Development Of Leaves In C3 And C4 Plants, Tayler J. Kriss

Master's Theses or Doctor of Nursing Practice

To study chlorophyll development time and overall photosynthetic development in C3 and C4 leaves, seeds were germinated in complete darkness and achlorophyllous leaves were then allowed to develop in lighted conditions. Corn (Zea mays, C4), sorghum (Sorghum bicolor, C4), green bean (Phaseolus vulgaris, C3), broad bean (Vicia faba, C3), and wheat (Triticum aestivum, C3) were investigated for the first ten days of sunlight exposure. Chlorophyll concentration, chlorophyll fluorescence, and CO2 gas exchange measurements were conducted daily on the first leaf that emerged after the embryonic leaves of each plant. The first five days of the experiment, days zero to four …

The Effect Of Vegetative Structure On Nest-Burrow Selection By The Western Burrowing Owl: Comparing Traditional Methods To Photogrammetry With An Unmanned Aerial System, Dylan J. Steffen

Master's Theses or Doctor of Nursing Practice

The shortgrass prairie ecoregion in the United States has been reduced to 52% of its historical extent, contributing to reduced habitat for native species. One such species is the Burrowing Owl (Athene cunicularia). The Western Burrowing Owl subspecies (A. c. hypugaea) is listed as a Species of Special Concern in nearly every western and midwestern state, including Kansas where it is designated as a Tier II Species of Greatest Conservation Need. Habitat destruction due to conversion to cropland, increasing use of pesticides, and reduction in burrowing mammal abundance are the primary threats that have led to …

Size And Age Structure Of Introduced Populations Of Blue Catfish (Ictalurus Furcatus) In Two Kansas Reservoirs And Implications For Management, Ernesto Flores

Master's Theses or Doctor of Nursing Practice

ABSTRACT

The introduction of a new fish species into an aquatic ecosystem can bring about many challenges for fisheries managers. Questions might arise for the manager regarding the initial sportfish survival rate, grow rate, reproduction and recruitment, and what kind of impact will the introduction have on the already established populations found in the water body. A new population of fish is often protected using length limit regulations, allowing biologists to gain insight on whether the population will be self-sustaining or in need of periodic stockings. Age and growth information is used to understand population dynamics, estimate annual mortality and …

Rna Interference Of Three Genes Of The Unfolded Protein Response: Activating Factor Of Transcription 4, Eukaryotic Translation Initiation Factor 2-Alpha Kinase, And Inositol-Requiring Enzyme 1 In Acyrthosiphon Pisum, Jared Ridder

Master's Theses or Doctor of Nursing Practice

Activating Transcription Factor 4 (ATF4) is a transcription factor that can act as both an activator or repressor and is a critical component of the Unfolded Protein Response (UPR) and Amino Acid Response (AAR) pathways. Inositol-requiring enzyme 1 (IRE1) is an Endoplasmic Reticulum (ER) membrane-bound kinase/endoribonuclease that functions as a sensor of unfolded protein and is the most conserved component of the UPR in eukaryotes. Eukaryotic Initiation Factor-2-alpha Kinase (PERK) is an ER membrane bound kinase that phosphorylates eukaryotic initiation factor upon activation of the UPR causing downregulation of protein synthesis. It was hypothesized that introduction of double-stranded RNA (dsRNA) …

Nutrient Flux From Aquatic To Terrestrial Invertebrate Communities Across A Lakeside Ecotone, Hosanna B. Loreaux

Browse all Theses and Dissertations

In this study, I examined how the spatiotemporal distribution of spider webs and diet changed in a lake riparian zone with increasing distance from an aquatic resource. I surveyed twenty, one-hundred meter transects along the perimeters of Sanford and Escanaba lakes (Wisconsin). Overall, spider web abundance was highest near the lakes and decreased moving into the adjacent forest. Horizontal orb webs, vertical orb webs, and mesh webs showed strong negative relationships with distance from the lakes. Aquatic insects composed an average 36-64% of spider diet for all spider families throughout the riparian zone, suggesting that some spider families are selecting …

Effects Of Coral Reef Habitat Complexity On The Community Composition And Trophic Structure Of Marine Fish Assemblages In Indonesia’S Wakatobi Marine National Park, Kuyer Josiah Fazekas Jr.

Browse all Theses and Dissertations

The coral reefs within Indonesia’s Wakatobi Marine National Park support a high diversity of reef-building hard corals and associated marine fish. Climate change threatens to dramatically affect coral reef ecosystems by altering the interactions between reef fish and the specific microhabitats they depend on for survival. To examine the spatially varied effects of habitat complexity on the community composition and trophic structure of marine fish assemblages, I analyzed fish community and habitat complexity data across reef zones. Habitat complexity metrics were: structural complexity, the percentage of hard coral (HC) cover, HC genera richness, HC genera diversity (Shannon index), and HC …

Environnmental Influences On Caribbean Octocoral-Symbiodiniaceae Symbioses, Mark Mccauley

Electronic Theses and Dissertations

A Caribbean octocoral colony is an assemblage of the octocoral host, dinoflagellate algae (family Symbiodiniaceae), bacteria and other microbes, together functioning as meta-organism (holobiont). Even though octocorals dominate many Caribbean reefs, compared to scleractinian corals, little is known about their biology under ambient or potentially stressful conditions. Of the nine species of octocorals (gorgonian corals, Order: Alcyonacea) studied, each had significantly different polyp behaviors, biochemical compositions, Symbiodiniaceae parameters, isotopic signatures, in addition to hosting distinct microbial assemblages. We identified multiple Symbiodiniaceae species (Breviolum minutum, Breviolum B41, Breviolum B1a and Breviolum B1i), inhabiting the gorgonians. These symbioses were temporally and …

Analysis Of Brevundimonas Subvibrioides Developmental Signaling Systems Reveals Unexpected Differences Between Phenotypes And C-Di-Gmp Levels, Lauryn Anne Sperling

Electronic Theses and Dissertations

The DivJ-DivK-PleC signaling system of Caulobacter crescentus is a signaling network that regulates polar development and the cell cycle. This system is conserved in closely related bacteria, including the sister genus Brevundimonas. Previous studies had shown unexpected phenotypic differences between the C. crescentus divK mutant and the analogous mutant of Brevundimonas subvibrioides, but further characterization was not performed. Here, phenotypic assays analyzing motility, adhesion, and pilus production (the latter characterized by a newly discovered bacteriophage) revealed that divJ and pleC mutants have mostly similar phenotypes as their C. crescentus homologs, but divK mutants maintain largely opposite phenotypes than …

Description And Alleviation Of The Stress Response In Atlantic Sharpnose Sharks (Rhizoprionodon Terraenovae), White-Spotted Bamboo Sharks (Chiloscyllium Plagiosum), And Golden Shiners (Notemigonus Crysoleucas), Lauren Nicole Fuller

Electronic Theses and Dissertations

Sharks are an essential component of many marine ecosystems; however they have experienced population declines mainly attributed to overfishing and capture of sharks as bycatch. Despite sharks often being released when captured as bycatch the act of capture can result in a stress response which may cause severe physiological perturbations. Studies have investigated the physiological impacts of capture stress on elasmobranchs but most have primarily focused on the secondary stress response. I conducted a series of studies to further describe the primary stress response through quantification of adrenocorticotropic hormone (ACTH) while also investigating methods such as sedation and limiting air …

Application And Refinement Of Molecular Ecology Techniques For Amphibian Conservation, Stephanie Marie Burgess

Electronic Theses and Dissertations

Wildlife conservation has become increasingly difficult due to habitat loss habitat fragmentation and land use change. Thus conservationists have embraced advances in molecular ecology such as landscape genetics and microbial bioinformatics that employ genetic techniques to further understand the relationship between individuals and their environment. In landscape genetics model inferences can be used to identify features that facilitate or resist gene flow providing a framework for anticipating the impacts of land use changes on a species’ ability to disperse. However the factors that affect the transferability of landscape genetics inferences are poorly understood and little is known about the effect …

An Experimental Test Of Controls On Resource Exchange In An Ectomycorrhizal Mutualism, Amber Lynn Horning

Electronic Theses and Dissertations

Models of resource exchange mutualisms utilize economic principles to explain how the costs and benefits of these interactions vary with environmental context. All of these models use a ratio of resource exchange (e.g., nitrogen: carbon) as the central variable, and it is unclear whether such exchange ratios predict outcomes of mutualisms in natural systems. Corrêa et al. (2008) hypothesized instead that the absolute flux of the most limiting nutrient, rather than the ratio of the two exchanged resources, best explains the benefits of resource exchange mutualisms. To distinguish between these two competing hypotheses, we measured resource transfers, and their ratios, …

The Ecology And Behavior Of Spring Migrating Indiana Bats (Myotis Sodalis), Piper Lee Roby

Theses and Dissertations--Animal and Food Sciences

Migration of animals has been studied for decades and has included everything from large terrestrial and pelagic mammals traveling thousands of kilometers to many types of birds flying through several countries to insects going through multiple life cycles in a single migration. The migration of bats has been studied in broad terms to gather coarse information such as distance traveled, connecting summer and winter habitat, and a general understanding of timing. However, only recently have researchers begun to understand the specifics of bat migration including physiology and fine resolution behavior.

Using nine years of spring migration data collected on VHF …

Larsonia Pterophylla (Cnidaria, Pandeidae) Parasitic On Two Leptocephali: Paraconger Sp. (Congridae) And Callechelyini Gen. Sp. (Ophichthidae) In The Gulf Of Mexico, Matthew S. Woodstock, Charles Golightly, Danté Fenolio, Jon A. Moore

Gulf and Caribbean Research

No abstract provided.

Habitat Saturation Results In Joint-Nesting Female Coalitions In A Social Bird, Sahas Barve, Walter D. Koenig, Joseph Haydock, Eric L. Walters

Biological Sciences Faculty Publications

Joint nesting by females and cooperative polyandry—cooperatively breeding groups with a male-biased breeder sex ratio—are little-understood, rare breeding systems. We tested alternative hypotheses of factors potentially driving these phenomena in a population of joint-nesting acorn woodpeckers (Melanerpes formicivorus). During periods of high population density and thus low independent breeding opportunities, acorn woodpecker females formed joint-nesting coalitions with close kin. Coalitions were typically associated with groups with a male bias. We found strong evidence for both inter- and intrasexual conflict, as joint nesting conferred a fitness benefit to some males, a significant fitness cost to females, and no gain in per …

Seasonal Spatial Segregation In Blue Sharks (Prionace Glauca) By Sex And Size Class In The Northeast Pacific Ocean, Sara M. Maxwell, Kylie L. Scales, Steven Bograd, Dana K. Briscoe, Heidi Dewar, Elliott L. Hazen, Rebecca L. Lewison, Heather Welch, Larry B. Crowder

Biological Sciences Faculty Publications

Aim: Animal tracking can provide unique insights into the ecology and conservation of marine species, such as the partitioning of habitat, including differences between life history stages or sexes, and can inform fisheries stock assessments, bycatch reduction and spatial management such as dynamic management.

Location: Northeast Pacific Ocean.

Methods: We used satellite tracking data from 47 blue sharks (Prionace glauca) from the Northeast Pacific to determine movements and home range along the west coast of North America, and sex–size class (immature females, mature males) specific habitat preferences using boosted regression trees. Using a suite of static and dynamic …

Dynamics Of Two Pathogens In A Single Tick Population, Alexis White, Elsa Schaefer, Chelsea Wright-Thompson, Christopher M. Kribs, Holly Gaff

Biological Sciences Faculty Publications

A mathematical model for a two-pathogen, one-tick, one-host system is presented and explored. The goal of this model is to determine how long an invading pathogen persists within a tick population in which a resident pathogen is already established. The numerical simulations of the model demonstrate the parameter ranges that allow for coexistence of the two pathogens. Sensitivity analysis highlights the importance of vector-borne, tick-to-host, transmission rates on the invasion reproductive number and persistence of the pathogens over time. The model is then applied to a case study based on a reclaimed swampland field site in southeastern Virginia using field …

Put Your Money Where Your Mouth Is: Reforming Organized Dentistry To Address Persistent Oral Health Disparities In The U.S., Aparna Chintapalli

Pomona Senior Theses

The importance of oral health has been largely neglected from the conventional standards of healthcare in terms of public understanding & prioritization, the industrial infrastructure, and the scope of prevention & early-intervention services. Its adjunctive locus to the field of medicine has lead to the bifurcation of the oral cavity from the rest of the human body. As a result of this divide, there have been multiple factors that have allowed socially stratified oral health outcomes to manifest. This thesis examines the determinants of oral health disparities through a multidisciplinary lens (i.e. biology, public policy, infrastructure), and offers evidence of …

Field Testing Integrated Interventions For Schistosomiasis Elimination In The People's Republic Of China: Outcomes Of A Multifactorial Cluster-Randomized Controlled Trial, Gail M. Williams, Yue-Sheng Li, Darren J. Gray, Zheng-Yuan Zhao, Donald A. Harn, Lisa M. Shollenberger, Sheng-Ming Li, Xinglin Yu, Zeng Feng, Jia-Gang Guo, Jie Zhou, Yu-Lan Dong, Yuan Li, Biao Guo, Patrick Driguez, Marina Harvie, Hong You, Allen G. Ross, Donald P. Mcmanus

Biological Sciences Faculty Publications

Despite significant progress, China faces the challenge of re-emerging schistosomiasis transmission in currently controlled areas due, in part, to the presence of a range of animal reservoirs, notably water buffalo and cattle, which can harbor Schistosoma japonicum infections. Environmental, ecological and social-demographic changes in China, shown to affect the distribution of oncomelanid snails, can also impact future schistosomiasis transmission. In light of their importance in the S. japonicum, lifecycle, vaccination has been proposed as a means to reduce the excretion of egg from cattle and buffalo, thereby interrupting transmission from these reservoir hosts to snails. A DNA-based vaccine (SjCTPI) …

Editorial: Advances In The Biology And Conservation Of Marine Turtles, Sara M. Maxwell, Annette C. Broderick, Peter H. Dutton, Sabrina Fossette-Halot, Mariana M.P.B. Fuentes, Richard D. Reina

Biological Sciences Faculty Publications

(First Paragraph) Marine turtles have been the subject of research over many decades, inspired by their unique life history and necessitated by their declining populations from a suite of human impacts including direct harvest, bycatch in marine fisheries, pollution, and climate change. Despite this, much about marine turtle biology has remained a mystery (Godley et al., 2008; Rees et al., 2016; Wildermann et al., 2018), but the rate of scientific discovery is increasing rapidly. As research techniques and conservation practices expand, the marine turtle research community has kept abreast of these developments and their application to marine turtles. In this …

Micromanipulation And Genetic Analysis Of Individual Sperm Cells For Sexual Assault Investigations, Amanda Penn

Honors Undergraduate Theses

Sexual assault investigations utilize both physical and biological evidence to aid in the investigation. Physical evidence may include fingerprints, hair, fibers, stains, soil, and glass. Biological evidence may include semen, saliva, vaginal secretions, menstrual blood, and skin. Semen, often found in small or trace quantities, is of great importance when trying to identify the perpetrator. From the semen sample, DNA profiles using autosomal short tandem repeats (aSTRs) (gold standard in forensic science) or Y-chromosome short tandem repeats (Y-STRs) can be obtained and can be used to identify a perpetrator through comparison to suspect reference samples or by searching the profile …

Investigating The Role Of Neuronal Aging In Fragile X-Associated Tremor/Ataxia Syndrome, Katlin Marie Hencak

Honors Undergraduate Theses

Fragile X-associated tremor/ataxia syndrome (FXTAS) is an X-linked late-onset neurodegenerative disorder caused by a noncoding trinucleotide repeat expansion in the FMR1 gene. This gene produces fragile x mental retardation protein (FMRP), an RNA binding protein whose targets are involved in brain development and synaptic plasticity. One of the proposed mechanisms of FXTAS pathogenesis is an RNA gain-of-function in which the repeat expansion causes toxic mRNA that sequesters important proteins in the cell, interfering with their functions. Another suggested method of pathogenesis is through a mutant protein called FMRpolyG. This protein results from repeat-associated non-AUG (RAN) translation, in which the expanded …

Elucidating The Role Of Oxygen And Biotype In The Environmental Persistence Of Vibrio Cholerae, Amy M. Freiberg

Honors Undergraduate Theses

Vibrio cholerae is a natural inhabitant of aquatic environments and serves as the etiological agent for the severe diarrheal disease, cholera. Cholera epidemics follow a regular seasonal pattern, which account for tens to hundreds of thousands of deaths in a given year. V. choleraenaturally persist between epidemics through entry into a dormant state known as viable but nonculturable (VBNC). Research has shown that V. choleraein this VBNC state experience drastic morphological and metabolic changes, which serve as survival mechanisms until environmental conditions become suitable again. The natural marine ecosystem that V. cholerae inhabitis comprised of a complex …

Seascape Genetics And Rehabilitation Efficiency In The Florida Manatee, Madison Hall

Electronic Theses and Dissertations

The Florida manatee (Trichechus manatus latirostris) was recently downlisted federally from "endangered" to "threatened" despite acknowledgments of remaining threats to long term population persistence. Challenges to future manatee conservation include, but are not limited to, increases in frequency of harmful algal blooms, intensifying anthropogenic disturbance, and loss of warm-water habitat. The goals of this dissertation were 1) to assess threats to the manatee via a comprehensive, long-term (1973-2016), retrospective analysis of the manatee rescue and rehabilitation partnership (MRRP) and 2) to use seascape genetics analysis to examine whether abiotic, biotic, or anthropogenic seascape variables could significantly describe genetic distance patterns …

Understanding Sediment Biogeochemistry And The Role Of Juvenile Oysters On Recently Restored Eastern Oyster Reefs, Bryan Locher

Electronic Theses and Dissertations

In recent decades, goals for the restoration of eastern oyster (Crassostrea virginica) populations along the eastern coast of the United States have shifted from increasing harvestable oyster fisheries to enhancing the range of ecosystem services provided by oyster reefs. By filtering large volumes of water and releasing nutrient-rich feces and pseudofeces, oysters can locally enhance sediment biogeochemical cycling compared to that of unstructured benthic environments. An ongoing restoration program in Mosquito Lagoon, FL was leveraged to assess the immediate impacts ( < 1 year) of restoration on sediment biogeochemical properties of oyster reefs. The first study measured both short-term and long-term pools of carbon, nitrogen and phosphorus on dead, natural and restored reefs periodically over one year. The second study investigated one of the contributions to sediment nutrient pools by comparing feeding and feces/pseudofeces nutrient content of juvenile and older oysters. Results show that inorganic nitrogen and phosphorus pools can change within weeks after restoration and total nutrient pools by 6 months post-restoration. Restored reefs experienced a 136 % increase in ammonium, 78 % increase in total nitrogen, 46 % increase in total phosphorus, and 75 % increase in organic matter concentrations after 12 months of restoration. These nutrient increases were all positively correlated with oyster density, shell length and reef height measured on each reef. When standardized to grams of dry tissue weight, juvenile oysters showed significantly higher rates of chlorophyll-a removal, release of ammonium, and biodeposits with higher concentrations of dissolved organic carbon, nitrite + nitrate, and ammonium. The short-term changes to biogeochemical cycling on eastern oyster reefs within the first year of restoration are important to managers seeking to monitor ecosystem service recovery and overall coastal ecosystem health.