Biology Commons^™

Perceived Threat To Paternity Reduces Liklihood Of Paternal Provisioning In House Wrens, Rachael A. Disciullo, Charles F. Thompson, Scott K. Sakaluk

Faculty Publications – Biological Sciences

Biparental care is a critical and, occasionally, unequally shared obligation that ensures that young survive to maturity. Such care may be complicated in systems in which one parent, typically the male, is unsure of his genetic relatedness to the young. Males may reduce paternal provisioning when full paternity is not assured, as occurs in mating systems in which females engage in extrapair copulations. Moreover, other factors independent of extrapair matings, such as male personality traits, likely also affect the level of paternal care. In this study, we determined the effect of a paternity threat event (i.e., a conspecific or a …

The Role Of Dunc13 In Ethanol Tolerance, Yusuke Wachi

Electronic Theses and Dissertations

Although the effects of ethanol on presynaptic activity have been studied, the molecular mechanisms and the changes in gene expression which are responsible for inducing ethanol tolerance are unclear. Munc13-1 is an active-zone protein that is essential for presynaptic vesicle fusion. This protein interacts with vesicle fusion machinery at presynaptic active zones in the mammalian brain. The C1 domain of Munc13-1 binds diacylglycerol (DAG), which helps membrane localization of this protein and promotes vesicle fusion, facilitating synaptic vesicle release. Previously, it was shown that ethanol binds to the C1 domain of Munc13-1 in vitro at concentrations below 100 mM (Das …

Effects Of Impoundments On The Community Assemblage And Gene Flow Of Stream Crayfishes, Zanethia Choice Barnett

Electronic Theses and Dissertations

Dams and their impoundments block movement of stream organism and change stream physiochemical properties, which subsequently changes biological assemblages and creates barriers to gene flow. While changes in species assemblages and gene flow have been assessed for numerous impoundments and stream organisms, no study has assessed the effects of large impoundments on crayfish assemblages and population genetic diversity and connectivity. I examined the physiochemical, biological, and genetic effects of impoundments on crayfishes. Between May 2015 and August 2017, I sampled multiple sites up- and downstream of three impounded streams, and along the lengths of two unimpounded streams, in the Bear …

Effects Of Thermal Stress On Amount, Composition, And Antibacterial Properties Of Coral Mucus, Rachel M. Wright, Marie E. Strader, Heather M. Genuise, Mikhail Matz

Biological Sciences: Faculty Publications

Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, CA, United States of America ABSTRACT The surface mucus layer of reef-building corals supports feeding, sediment clearing, and protection from pathogenic invaders. As much as half of the fixed carbon supplied by the corals' photosynthetic symbionts is incorporated into expelled mucus. It is therefore reasonable to expect that coral bleaching (disruption of the coralfialgal symbiosis) would affect mucus production. Since coral mucus serves as an important nutrient source for the entire reef community, this could have substantial ecosystemwide consequences. In this study, we examined the effects of heat …

Morphometric Analysis Of Subfossil Macronycteris Spp. (Chiroptera: Hipposideridae) From Madagascar, Jamie Lynn Alumbaugh

Graduate Research Theses & Dissertations

Macronycteris bats are morphologically conservative between species but demonstrate intraspecific morphological variation between geographic locations and sexes. Two of the four living species of Macronycteris are found on Madagascar, where they are broadly distributed and demonstrate a trend in body size correlated with the latitudinal precipitation cline on the western side of the island. The presence of an extinct species, M. besaoaka, from Anhjohibe Cave in northern Madagascar suggests that Macronycteris was once more diverse, at least with respect to morphology. Since its description, taxonomic and phylogenetic revisions have reshaped our understanding of this genus. On Madagascar, these include the …

Differential Gene Expression Between Wild And Restoration Populations Of The Eastern Oyster, Andrea Gabriele

Honors College Theses

No abstract provided.

Relationship Of Ndvi And Oak (Quercus)Pollen Including A Predictive Model In The Sw Mediterranean Region, Rocío González-Naharro, Elia Quirós, Santiago Fernández-Rodríguez, Inmaculada Silva-Palacios, J. M. Maya-Manzano, Rafael Tormo-Molina, Raúl Pecero-Casimiro, Alejandro Monroy-Colin, Ángela Gonzalo-Garijo

Articles

Techniques of remote sensing are being used to develop phenological studies. Our goal is to study the correlation among the Normalized Difference Vegetation Index (NDVI) related with oak trees included in three set data polygons (15, 25 and 50 km to aerobiological sampling point as NDVI-15, 25 and 50), and oak (Quercus) daily average pollen counts from 1994 to 2013. The study was developed in the SW Mediterranean region with continuous pollen recording within the mean pollen season of each studied year. These pollen concentrations were compared with NDVI values in the locations containing the vegetation under a study based …

Mapping The Effects Of 5’ Untranslated Region Deletions On Translation Of 3a In Bmv Rna3, Courtney Marie Bozman

Graduate Research Theses & Dissertations

Brome mosaic virus (BMV) is a positive sense, single-stranded RNA virus that infects a wide array of plant hosts globally including: wheat, oats, maize, barley, and rye. Since its discovery in the 1940s, BMV has served as a model organism in uncovering the modalities of viral infectivity, composition, translation, and replication. In many viruses, it is typically imperative to recruit cellular machinery to produce viral proteins as their coding capacity is limited. Therefore, there are sequences and structures within the leader sequences allow them to be competitive with the eukaryotic mRNAs. Although BMV has been thoroughly researched in these other …

Volume 11, Jacob Carney, Ryan White, Joseph Hyman, Jenny Raven, Megan Garrett, Ibrahim Kante, Summer Meinhard, Lauren Johnson, William "Editha" Dean Howells, Laura Gottschalk, Christopher Siefke, Pink Powell, Natasha Woodmancy, Katharine Colley, Abbey Mays, Charlotte Potts

Incite: The Journal of Undergraduate Scholarship

Table of Contents:

Introduction, Dr. Roger A. Byrne, Dean

From the Editor, Dr. Larissa "Kat" Tracy

From the Designers, Rachel English, Rachel Hanson

Synthesis of 3,5-substituted Parabens and their Antimicrobial Properties, Jacob Coarney, Ryan White

Chernobyl: Putting "Perestroika" and "Glasnot" to the Test, Joseph Hyman

Art by Jenny Raven

Watering Down Accessibility: The Issue with Public Access to Alaska's Federal Waterways, Meagan Garrett

Why Has the Democratic Republic of the Congo outsourced its Responsibility to Educate its Citizens? Ibrahim Kante

Art by Summer Meinhard

A Computational Study of Single Molecule Diodes, Lauren Johnson

Satire of …

Supporting Teacher And Student Competency With Scientific Practices Through Lesson Study, Jonathan Robert Bowers

Browse all Theses and Dissertations

Although numerous studies have documented the benefits of using scientific practices in K-12 education, many in-service teachers continue to use traditional pedagogical practices. In order to address the underlying deficiencies in teacher pedagogical design capacity (PDC) for practices, we developed a lesson study (LS) based professional learning (PL) program, which we implemented at a low socio-economic status (SES) school district. Using classical content analysis and supplementary assessments, I investigated the impact this LS based PL program had on teacher PDC for scientific practices (particularly the practice of argumentation), student argumentation competency, and teacher self-efficacy. My results demonstrate that teacher PDC …

The Development Of A High-Throughput Screening Assay For Acetyl-Coa Carboxylase Using 1,3,6,8-Tetrahydroxynapthalene Synthase, Sarah Elayne Cohen

Honors Capstones

No abstract provided.

Canis Lupus (Gray Wolf) Pup Survival In Yellowstone National Park, Anne Marie Jehle

Undergraduate Theses, Professional Papers, and Capstone Artifacts

The aim of this study was to describe gray wolf (Canis lupus) pup survival rates throughout the summer months in Yellowstone National Park. Understanding pup survival has implications for trends in pack and population age structure, cooperative breeding ecology and other breeding tendencies, social hierarchies, and population fitness, among other elements of species-specific population ecology. A general understanding of trends in pup survival is also relevant to state and federal land that allow gray wolf harvest. Understanding such trends and survival ecology gives managers and biologists the opportunity to evaluate gray wolf populations at a more comprehensive level and implement …

Effect Of Process-Oriented Guided-Inquiry Learning (Pogil) On Preservice Elementary Teachers' Understanding Of Biological Classification, Mackenzie Volz

All Graduate Theses, Dissertations, and Other Capstone Projects

This study examined preservice elementary teachers’ biological classification conceptions and whether process-oriented guided-inquiry learning (POGIL) or traditional pedagogies affect preservice elementary teachers’ understanding of biological classification conceptions. A literature review was completed to determine common biological classification conceptions that exist among all researched populations, what misconceptions are present regarding biological classification, and whether POGIL was an appropriate pedagogy to use in the experimental study. The findings from the literature review were used to develop a mixed-method research study. Both quantitative and qualitative data was gathered through the use of pre- and posttests and post-instruction clinical interviews. Participants (n = 47) …

Dosage Compensation Of The X Chromosomes In Bovine Germline, Early Embryos, And Somatic Tissues, Zongliang Jiang

Faculty Publications

Dosage compensation of the mammalian X chromosome (X) was proposed by Susumu Ohno as a mechanism wherein the inactivation of one X in females would lead to doubling the expression of the other. This would resolve the dosage imbalance between eutherian females (XX) versus male (XY) and between a single active X versus autosome pairs (A). Expression ratio of X- and A-linked genes has been relatively well studied in humans and mice, despite controversial results over the existence of upregulation of X-linked genes. Here we report the first comprehensive test of Ohno's hypothesis in bovine preattachment embryos, germline, and somatic …

Stoichiometric Homeostasis In Two Native And Two Invasive South Dakotan Grasses, Joshua Thonas Harvey

Electronic Theses and Dissertations

Increased nutrient availability has been widely linked to the success of invasive plants, however a general mechanism explaining these observations is lacking. Stoichiometric homeostasis (H), which is the regulation of internal nutrient concentrations, has been used to explain changes in plant community diversity under alterations in nutrient availability. One hypothesis holds that plants with high regulation (larger H) decrease in abundance in nutrient enriched conditions but are stable in nutrient deficient and drought conditions, likely due to extensive root systems. Additionally, plants with low regulation (lower H) increase in abundance under nutrient enriched conditions but are sensitive to drought …

Assessing Freshwater Mussel (Bivalvia: Unionidae) Assemblages And Effects Of Eutrophication On Pyganodon Grandis In Lakes Of Eastern South Dakota, Katherine M. Wollman

Electronic Theses and Dissertations

Globally, the family Unionidae is the most threatened group of freshwater fauna. South Dakota is well known for its agricultural production, leading to cultural eutrophication from enhanced fertilizers and sediments. This impact can alter species presence, age, growth and mortality. Objectives of this study were to 1) implement the first comprehensive lake survey of freshwater mussels in eastern South Dakota lakes and document distribution, occurrence and relative abundance, 2) evaluate relationships between age, growth and mortality of Pyganodon grandis and lake trophic state. Freshwater mussels were sampled in 2017 from 116 proportionally and randomly selected natural lakes and reservoir basins …

Novel Approaches To Evaluate And Enhance Neonatal Calf Gastrointestinal Health And Development, Fernanda Trindade Da Rosa

Electronic Theses and Dissertations

Physiological adaptations of the gastrointestinal tract (GIT) epithelial cells as well as methods to manipulate early life GIT microbiota colonization during the neonatal stage, is of great importance to the dairy industry. The first objective of this research was to optimize a method based on evaluation of bovine transcripts in fecal RNA via RTqPCR using L-selectin (SELL) as a marker for polymorphonuclear leukocytes (PMNL), keratin 8 (KRT8) and fatty acid binding protein 2 (FABP2) for GIT enterocytes, and tight junctions in fecal RNA and GIT sections in dairy calves. To test the reliability of the fecal RNA method, fecal and …

Validation Of Candidate Loci For Maize Regrowability And Selection Of Near Isogenic Lines For The Loci, Tajbir Raihan

Electronic Theses and Dissertations

Developing perennial grain crops is an effective way for sustainable agriculture and it can be a tool for the betterment of the overall ecosystem. To understand how perenniality works in perennial species, we made a cross between Zea diploperennis and maize (Z. mays) inbred line B73. F1 hybrids produced from this cross were selfed to get the F2 population and later the F2 population underwent Genotyping-By- Sequencing (GBS) analysis. Based on the candidate loci identified on chromosome 2 and chromosome 7 from GBS, SNP-specific markers were developed from the candidate locus interval and used to genotype the F2 …

Characterization Of Pacific Oyster Crassostrea Gigas Proteomic Response To Natural Environmental Differences, Yaamini R. Venkataraman, Emma Timmins-Schiffman, Micah J. Horwith, Alexander T. Lowe, Brook Nunn, Brent Vadopalas, Laura H. Spencer, Steven B. Roberts

Biology

Global climate change is rapidly altering coastal marine ecosystems that are important for food production. A comprehensive understanding of how organisms will respond to these complex environmental changes can come only from observing and studying species within their natural environment. To this end, the effects of environmental drivers—pH, dissolved oxygen content, salinity, and temperature—on Pacific oyster Crassostrea gigas physiology were evaluated in an outplant experiment. Sibling juvenile oysters were outplanted to eelgrass and unvegetated habitat at 5 different estuarine sites within the Acidification Nearshore Monitoring Network in Washington State, USA, to evaluate how regional environmental drivers influence molecular physiology. Within …

Characterization Of Peroxidase And Catalase Genes In Defense Mechanisms Of Physcomitrella Patens, Lauren Ciulla

Undergraduate Honors Thesis Collection

Systemic acquired resistance (SAR) and the hypersensitive response (HR) are two important induced defense mechanisms in plants. SAR is the development of an enhanced resistance to a pathogen due to a prior encounter. It results in faster and more effective defensive action within the plant upon a second-time pathogen attack. HR is a plant defense mechanism that utilizes reactive oxygen species (ROS) to attack pathogens at the site of an infection. ROS can be generated in many ways; however, it is specifically known that plants use the enzyme peroxidase to generate the ROS hydrogen peroxide during HR. Plants also use …

Soil Health Indicators And Sustainable Practices On Indy Urban Farms: An Investigation Of Ecosystem Functionality, Rebecca Lewis

Undergraduate Honors Thesis Collection

Urban agriculture is capable of restoring ecosystem services like food production, recreation, and clean soil and water to cities. Urban farms in particular can help relieve pressure for areas with limited food access, also known as food desserts. This is especially important to the community of Indianapolis because the city is tied for the most food desert areas within a U.S. metropolitan area. To help a community, an urban farm must have healthy, nutrient rich soils. Nitrogen is the most limiting nutrient for plants when it comes to growth and development. Plants cannot produce nitrogen; they acquire the mineral by …

Determining The Role Of Mutant P53-Mediated Inflammation In Hematopoietic Stem Cell Expansion, Katherine Strube

Undergraduate Honors Thesis Collection

Clonal hematopoiesis of indeterminate potential (CHIP) increases with age and occurs when a single mutant hematopoietic stem cell (HSC) contributes to a significant clonal proportion of mature blood lineages. CHIP is associated with increased risks of de novo and therapy-related hematological neoplasms, suggesting that mutations identified in CHIP likely drive disease development. Acquired somatic mutations in the TP53 gene, which encodes the tumor suppressor protein p53, rank in the top five among mutations identified in CHIP. The Liu lab recently showed that TP53 mutations identified in CHIP promote HSC expansion. Previous studies have examined the possible cell-intrinsic mechanisms by which …

Ua66/6/3/1 Ogden College Of Science & Engineering Biology Student Organizations Alpha Epsilon Delta, Wku Archives

WKU Archives Collection Inventories

Records by and about Alpha Epsilon Delta.

Ua66/6/3/2 Ogden College Of Science & Engineering Biology Student Organizations Biology Club, Wku Archives

WKU Archives Collection Inventories

Records created by and about the Biology Club.

Distribution, Hybridization, And Taxonomic Status Of Two-Lined Salamanders (Eurycea Bislineata Complex) In Virginia And West Virginia, Paul W. Sattler, Timothy R. Brophy

Faculty Publications and Presentations

We used three diagnostic protein markers to examine salamanders of the Eurycea bislineata complex at 80 localities in Virginia and West Virginia. Two groups were strongly differentiated and met at a narrow contact zone. Rare hybridization was observed as well as limited introgression up to 5 km north and 10 km south of the contact zone. At the contact zone, 1% F1, 2% F2, 32% backcross, and 66% parental genotypes were observed. This pattern of parapatric distribution with limited hybridization and introgression argues for the recognition of Eurycea bislineata and E. cirrigera as separate species.

Microbial Community In Hyperalkaline Steel Slag-Fill Emulates Serpentinizing Springs, J Ingemar Ohlsson, Jay T. Osvatic, Eric D. Becraft, Wesley D. Swingley

Biology

To date, a majority of studies of microbial life in hyperalkaline settings focus on environments that are also highly saline (haloalkaline). Haloalkaline conditions oer microbes abundant workarounds to maintain pH homeostasis, as salt ions can be exchanged for protons by dedicated antiporter proteins. Yet hyperalkaline freshwater systems also occur both naturally and anthropogenically, such as the slag fill aquifers around former Lake Calumet (Chicago, IL, USA). In this study, 16S rRNA gene sequences and metagenomic sequence libraries were collected to assess the taxonomic composition and functional potential of microbes present in these slag-polluted waterways. Relative 16S rRNA gene abundances in …

Casaicinoid Yield And The Effect Of Growth Hormones In Peppers, Jordan Szabat

Summer Community of Scholars Posters (RCEU and HCR Combined Programs)

No abstract provided.

Postfledging Habitat Selection And Survival Of Henslow’S Sparrow: Management Implications For A Critical Life Stage, Aaron C. Young, W. Andrew Cox, John P. Mccarty, L. Lareesa Wolfenbarger

Biology Faculty Publications

Conserving populations of species that rely on rare habitat requires that managers understand which habitat characteristics will best support population growth across multiple life stages. For songbirds, management is most often aimed at nesting adult habitat associations. However, habitat that meets adult requirements may not be similarly suited to requirements for other life stages. Henslow’s Sparrow (Centronyx henslowii) is a tallgrass prairie songbird listed as threatened or endangered in 13 states. We examined survival and habitat selection of Henslow’s Sparrow during the postfledging period. During the nesting seasons in 2015 and 2016, we attached radio transmitters to 46 nestlings in …

Targeted Resequencing Of Crispr Cas9 Mediated Icer Knockout In Sk-Mel-24 Cells, Justin Wheelan

Theses, Dissertations and Culminating Projects

Inducible cAMP Early Repressor (ICER) is a small transcription factor that originates from an intronic promoter within the cAMP Response Element Modulator (CREM) gene (Molina et al., 1993). ICER acts as a putative tumor suppressor by mediating cAMP antiproliferative activity by competitively binding to cAMP Response Elements (CRE’s) and repressing transcription of genes involved in cell division (Mémin et al., 2002). ICER has been shown to be effectively absent in cancer and suspected to be targeted for proteasomal degradation via ubiquitination (Healey et al., 2013). ICER is most likely regulated via post-translational modifications as a result of mutations on Ras/Raf …

Sex-Related Differences In Immune Response And Symptomatic Manifestations To Infection With Leishmania Species, Ryan D. Lockard, Mary E. Wilson, Nilda E. Rodriguez

Faculty Work

Worldwide, an estimated 12 million people are infected with Leishmania spp. and an additional 350 million are at risk of infection. Leishmania are intracellular parasites that cause disease by suppressing macrophage microbicidal responses. Infection can remain asymptomatic or lead to a spectrum of diseases including cutaneous, mucocutaneous, and visceral leishmaniasis. Ultimately, the combination of both pathogen and host factors determines the outcome of infection. Leishmaniasis, as well as numerous other infectious diseases, exhibits sex-related differences that cannot be explained solely in terms of environmental exposure or healthcare access. Furthermore, transcriptomic evidence is revealing that biological sex is a variable impacting …