Biology Commons^™

Local Adaptation, Genetic Divergence, And Experimental Selection In A Foundation Grass Across The Us Great Plains’ Climate Gradient, Matthew Galliart, Nora Bello, Mary Knapp, Jesse Poland, Paul St Amand, Sara Baer, Brian Maricle Ph.D., Adam B. Smith, Loretta Johnson

Biological Sciences Faculty Publications

Many prior studies have uncovered evidence for local adaptation using reciprocal transplant experiments. However, these studies are rarely conducted for a long enough time to observe succession and competitive dynamics in a community context, limiting inferences for long-lived species. Furthermore, the genetic basis of local adaptation and genetic associations with climate has rarely been identified. Here, we report on a long-term (6-year) experiment conducted under natural conditions focused on Andropogon gerardii, the dominant grass of the North American Great Plains tallgrass ecosystem. We focus on this foundation grass that comprises 80% of tallgrass prairie biomass and is widely used in …

The Cure For Cultivating Fastidious Microbes, Arundhati Bakshi, Austen T. Webber, Lorelei E. Patrick, William Wischusen, Cameron Thrash

Biological Sciences Faculty Publications

Course-Based Undergraduate Research Experiences (CUREs) expand the scientific educational benefits of research to large groups of students in a course setting. As part of an ongoing effort to integrate CUREs into first-year biology labs, we developed a microbiology CURE (mCURE) that uses a modified dilution-toextinction high throughput culturing protocol for isolating abundant yet fastidious aquatic bacterioplankton during one semester. Students learn common molecular biology techniques like nucleic acid extraction, PCR, and molecular characterization; read and evaluate scientific literature; and receive training in scientific communication through written and oral exercises that incorporate social media elements. In the first three semesters, the …

Monitoring Biodiversity Using Aquatic Environmental Dna And Nanopore Sequencing, Jordan Callahan

SURE (Stonehill Undergraduate Research Experience)

This project aimed to detect wetland organismal diversity on the Stonehill College campus by sequencing free aquatic eDNA collected from water samples in the seasonal wetland behind O’Hara Hall and Shields Science Center. The Oxford Nanopore MinION DNA sequencer offered real-time data collection at a relatively low cost and demonstrated an “in-the-field” workflow. DNA was extracted from water samples collected using a pump-filter collection apparatus. Protocols for Nanopore sequencing were established and surveys plan to be conducted in order to measure standing plant diversity around the sampling locations. Plant reads from each sample yielded plants primarily from the Brassica, Callitriche, …

Prepontine Non-Giant Neurons Drive Flexible Escape Behavior In Zebrafish, Gregory D. Marquart, Kathryn M. Tabor, Sadie A. Bergeron, Kevin L. Briggman, Harold A. Burgess

Faculty & Staff Scholarship

Many species execute ballistic escape reactions to avoid imminent danger. Despite fast reaction times, responses are often highly regulated, reflecting a trade-off between costly motor actions and perceived threat level. However, how sensory cues are integrated within premotor escape circuits remains poorly understood. Here, we show that in zebrafish, less precipitous threats elicit a delayed escape, characterized by flexible trajectories, which are driven by a cluster of 38 prepontine neurons that are completely separate from the fast escape pathway. Whereas neurons that initiate rapid escapes receive direct auditory input and drive motor neurons, input and output pathways for delayed escapes …

Full Issue: Volume 13, Number 1

The Science Journal of the Lander College of Arts and Sciences

Complete .pdf file of Volume 13, Number 1 of The Science Journal of the Lander College of Arts and Sciences.

The Role Of Glacial-Interglacial Climate Change In Shaping The Genetic Structure Of Eastern Subterranean Termites In The Southern Appalachian Mountains, Usa, Chaz Hyseni, Ryan C. Garrick

Faculty and Student Publications

Abstract: The eastern subterranean termite, Reticulitermes flavipes, currently inhabits previously glaciated regions of the northeastern U.S., as well as the unglaciated southern Appalachian Mountains and surrounding areas. We hypothesized that Pleistocene climatic fluctuations have influenced the distribution of R. flavipes, and thus the evolutionary history of the species. We estimated contemporary and historical geographic distributions of R. flavipes by constructing Species Distribution Models (SDM). We also inferred the evolutionary and demographic history of the species using mitochondrial (cytochrome oxidase I and II) and nuclear (endo-beta-1,4-glucanase) DNA sequence data. To do this, genetic populations were delineated using Bayesian spatial-genetic clustering, competing …

Mutualist-Provisioned Resources Impact Vector Competency, Rita V. M. Rio, Anna K. S. Jozwick, Amy F. Savage, Afsoon Sabet, Aurelien Vigneron, Yineng Wu, Serap Aksoy, Brian L. Weiss

Faculty & Staff Scholarship

ABSTRACT Many symbionts supplement their host’s diet with essential nutrients. However, whether these nutrients also enhance parasitism is unknown. In this study, we investigated whether folate (vitamin B9) production by the tsetse fly (Glossina spp.) essential mutualist, Wigglesworthia, aids auxotrophic African trypanosomes in completing their life cycle within this obligate vector. We show that the expression of Wigglesworthia folate biosynthesis genes changes with the progression of trypanosome infection within tsetse. The disruption of Wigglesworthia folate production caused a reduction in the percentage of flies that housed midgut (MG) trypanosome infections. However, decreased folate did not prevent MG trypanosomes from migrating …

Are Health Problems In Adulthood Linked To Our Experiences In The Womb? An Epigenetic Approach, Simone Tendler

The Science Journal of the Lander College of Arts and Sciences

The origins of adult disease have been a prime topic for research, as deciphering causes can lead to strategies for preventions and cures. There has been recent intrigue focused on the environment in the womb. Records from England and Wales in 1911 show that those who suffered from cardiovascular disease were geographically correlated with regions high in infant mortality in the past, seventy years before the study. When looking into the cause of the neonatal death rates, low birth weight, poor maternal health, and high maternal death rates during childbirth were clearly associated. Barker inferred that there is much happening …

Impact Of Physical Activity On Type 2 Diabetes Mellitus, Marshall Schwartz

The Science Journal of the Lander College of Arts and Sciences

Type 2 diabetes mellites has become an increasingly prevalent worldwide epidemic. The tremendous economic burden, coupled with the numerous secondary risks associated with the disease, have encouraged researchers to search for causes as well as treatment methods. This research paper focuses on the effect of physical activity as a preventative measure for those at risk for diabetes and as a treatment method for those already diagnosed with the disease. The articles collected included meta-analysis, randomized controlled trials, cohort studies, surveys, etc. The studies that were analyzed have indicated an inverse relationship between physical activity and type 2 diabetes. Since there …

Assessing The Impact Of Oyster Reef And Living Shoreline Restoration On Macroinvertebrate Community Assemblages In Mosquito Lagoon, Florida, Adam Searles

Honors Undergraduate Theses

As the world continues to experience substantial rates of habitat loss, habitat restoration has become of prime interest to ecologists worldwide. Restoration has shown to be successful in recovering targeted components of certain ecosystems but it is important to achieve a holistic understanding of the resulting ecological impacts it has on communities. To address this, four oyster reefs and three living shorelines were restored during the summer of 2017. These sites, along with four dead oyster reefs, four living oyster reefs, and three undisturbed (control) living shorelines, were sampled before restoration and regularly post-restoration for one year using lift nets. …

Ventral Tegmental Area Astrocytes Orchestrate Avoidance And Approach Behavior, J. A. Gomez, J. M. Perkins, Gerard M.J. Beaudoin Iii, N. B. Cook, S. A. Quraishi, E. A. Szoeke, K. Thangamani, C. W. Tschumi, M. J. Wanat, A. M. Maroof, M. J. Beckstead, P. A. Rosenberg, C. A. Paladini

Biology Faculty Research

The ventral tegmental area (VTA) is a heterogeneous midbrain structure, containing neurons and astrocytes, that coordinates behaviors by integrating activity from numerous afferents. Within neuron-astrocyte networks, astrocytes control signals from distinct afferents in a circuit-specific manner, but whether this capacity scales up to drive motivated behavior has been undetermined. Using genetic and optical dissection strategies we report that VTA astrocytes tune glutamatergic signaling selectively on local inhibitory neurons to drive a functional circuit for learned avoidance. In this circuit, astrocytes facilitate excitation of VTA GABA neurons to increase inhibition of dopamine neurons, eliciting real-time and learned avoidance behavior that is …

Macroevolutionary Patterning In Glucocorticoids Suggests Different Selective Pressures Shape Baseline And Stress-Induced Levels, Maren N. Vitousek, Michele A. Johnson, C. J. Downs, E. T. Miller, L. B. Martin, C. D. Francis, Jeremy W. Donald, M. J. Fuxjager, W. Goymann, M. Hau, Jerry F. Husak, Bonnie K. Kircher, R. Knapp, L. A. Schoenle, T. D. Williams

Biology Faculty Research

Glucocorticoid (GC) hormones are important phenotypic mediators across vertebrates, but their circulating concentrations can vary markedly. Here we investigate macroevolutionary patterning in GC levels across tetrapods by testing seven specific hypotheses about GC variation and evaluating whether the supported hypotheses reveal consistent patterns in GC evolution. If selection generally favors the “supportive” role of GCs in responding effectively to challenges, then baseline and/or stress-induced GCs may be higher in challenging contexts. Alternatively, if selection generally favors “protection” from GC-induced costs, GCs may be lower in environments where challenges are more common or severe. The predictors of baseline GCs were all …

Dorsal Raphe Dual Serotonin-Glutamate Neurons Drive Reward By Establishing Excitatory Synapses On Vta Mesoaccumbens Dopamine Neurons, H-L. Wang, S. Zhang, J. Qi, H. Wang, R. Cachope, C. A. Mejias-Aponte, J. A. Gomez, G. E. Mateo-Semidey, Gerard M.J. Beaudoin Iii, C. A. Paladini, J. F. Cheer, M. Morales

Biology Faculty Research

Dorsal raphe (DR) serotonin neurons provide a major input to the ventral tegmental area (VTA). Here, we show that DR serotonin transporter (SERT) neurons establish both asymmetric and symmetric synapses on VTA dopamine neurons, but most of these synapses are asymmetric. Moreover, the DR-SERT terminals making asymmetric synapses on VTA dopamine neurons coexpress vesicular glutamate transporter 3 (VGluT3; transporter for accumulation of glutamate for its synaptic release), suggesting the excitatory nature of these synapses. VTA photoactivation of DR-SERT fibers promotes conditioned place preference, elicits excitatory currents on mesoaccumbens dopamine neurons, increases their firing, and evokes dopamine release in nucleus accumbens. …

Characterization Of Vps41 And Its Role In The Regulated Secretory Pathway, Christian Henry Burns

Electronic Theses and Dissertations

Insulin secretory granules (SGs) mediate the regulated secretion of insulin, which is essential for glucose homeostasis. The basic machinery responsible for this regulated exocytosis consists of specific membrane proteins present both at the plasma membrane and on insulin SGs. The protein composition of insulin SGs thus dictates their release properties, yet the mechanisms controlling insulin SG formation, which determines this molecular composition, remain poorly understood. VPS41, a component of the endolysosomal tethering HOPS complex, was recently identified as a cytosolic factor involved in the formation of neuroendocrine/neuronal granules. We now find that a stable pool of VPS41 exists outside of …

Qualitative And Quantitative Fitness Consequences Of Advanced Maternal Age, Claudia Jean Hallagan

Electronic Theses and Dissertations

Parental age can affect offspring fitness across taxa and through various mechanisms. However, the effect(s) of advanced maternal age on offspring, particularly in insects, has not been comprehensively reviewed making it difficult to draw conclusions about the effects of advanced maternal age on offspring in insects. In my first chapter, I reviewed maternal age literature and found overall negative effects of advanced maternal age on offspring fitness. However, results vary depending on which fitness measures were used, the life stages at which offspring were measured, and the experimental design of the study. In my second chapter, I conducted an experiment …

Sphingosine-1-Phosphate Receptor 1 Activation In Astrocytes Contributes To Neuropathic Pain, Zhoumou Chen, Timothy M. Doyle, Livio Luongo, Tally M. Largent-Milnes, Luigino Antonio Giancotti, Grant Kolar, Silvia Squillace, Serena Boccella, John K. Walker, Alexander Pendleton, Sarah Spiegel, William L. Neumann, Todd W. Vanderah, Daniela Salvemini

Biological Sciences Faculty Research & Creative Works

Neuropathic pain afflicts millions of individuals and represents a major health problem for which there is limited effective and safe therapy. Emerging literature links altered sphingolipid metabolism to nociceptive processing. However, the neuropharmacology of sphingolipid signaling in the central nervous system in the context of chronic pain remains largely unexplored and controversial. We now provide evidence that sphingosine-1-phosphate (S1P) generated in the dorsal horn of the spinal cord in response to nerve injury drives neuropathic pain by selectively activating the S1P receptor subtype 1 (S1PR1) in astrocytes. Accordingly, genetic and pharmacological inhibition of S1PR1 with multiple antagonists in distinct chemical …

Prebiotics, Probiotics, And Bacterial Infections, Christina C. Tam, Kirkwood M. Land, Luisa W. Cheng

College of the Pacific Faculty Books and Book Chapters

Bacterial pathogens have developed exquisite virulence mechanisms to survive in the host cells. These virulence mechanisms help them bind and internalize into host cells, replicate, and evade the host immune response. The mammalian host itself has developed its own repertoire of weapons to prevent this from happening. One important component of host response in preventing infections in the gut lumen is the diverse commensal microbiota present. Dysbiosis of the gut microbiota has been implicated in the development of many gastrointestinal diseases. A potential therapeutic pathway to solve these diseases would be by providing probiotics and/or prebiotics to help stimulate growth …

The Effect Of Predator Kairomones On Caudal Regeneration By Allegheny Mountain Dusky Salamanders (Desmognathus Ochrophaeus), Wesley I. Payette, Aaron M. Sullivan

Faculty Publications - Department of Biological & Molecular Science

Many prey use autotomy as an antipredator mechanism. Rapid regeneration of autotomized appendages is beneficial because forfeited tissues may serve as organs for energy storage, accessories for locomotion, or indicators of social status. We monitored levels of caudal regeneration by Allegheny Mountain Dusky Salamanders (Desmognathus ochrophaeus Cope, 1859) exposed to kairomones from predatory Eastern Garter Snakes (Thamnophis sirtalis (Linnaeus, 1758)). After the induction of autotomy, salamanders were exposed to one of three treatment regimens: blank (water), or acute (30 min per week) or chronic (constant) exposure to predator kairomones during a 12-week study period. Overall, the mean volume …

The Biophysical Study Of The Efficacy Of Various Phospholipid Membranes On Daptomycin, Chaya Shor, Tamar Itzkowitz

The Science Journal of the Lander College of Arts and Sciences

Daptomycin is an important lipopeptide antibiotic used in the treatment of systematic and life-threatening infections of the skin and underlying tissue caused by Gram-positive bacteria. Calcium and phosphatidylglycerol (PG) must be present on the target cell membrane for daptomycin’s mechanism of action to proceed. Calcium and PG also promote oligomerization, a formation that has been assumed to aid in the bactericidal process. The purpose of the experiments conducted was to understand the basic biophysical properties of membrane phospholipids as they exist in their pure and mixed monolayer forms. Furthermore, the experiments conducted attempted to discern how daptomycin penetrates the different …

Ua84 Sigma Chi, Wku Archives

WKU Archives Collection Inventories

Records created by and about the WKU chapter of Sigma Xi.

Ua66/6/2 Ogden College Of Science & Engineering Biology Publications, Wku Archives

WKU Archives Collection Inventories

Publications created by and about Biology.

Ua66/6/1 Ogden College Of Science & Engineering Biology Administration, Wku Archives

WKU Archives Collection Inventories

Records created by and about the administration of the Biology Department.

Regeneration Data: Rna Sequences, Abijeet Singh Mehta, Amit Singh

Regeneration data

Abstract for paper for which this research was collected: Notophthalmus viridescens (Red-spotted Newt) possess amazing capabilities to regenerate their organs and other tissues. Previously, using a de novo assembly of the newt transcriptome combined with proteomic validation, we identified a novel family of 5 protein members expressed in adult tissues during regeneration in Notophthalmus viridescens. Due to absence of transgenic approaches in the Notophthalmus, and conservation of genetic machinery across species, we generated transgenic Drosophila melanogaster to misexpress these genes.

Samples for RNA sequencing were collected at third instar larval (L3) developmental stage. Out of the total 36,099 …

Diversity And Shifts Of The Bacterial Community Associated With Baikal Sponge Mass Mortalities, Sergei Belikov, Natalia Belkova, Tatiana Butina, Lubov Chernogor, Alexandra Martynova-Van Kley, Armen Nalian, Colin Rorex, Igor Khanaev, Olga Maikova, Sergey Feranchuk

Faculty Publications

The disease of freshwater sponges was first discovered in 2011, when pink samples were found in the Central Basin of Lake Baikal. Subsequently, the visible signs of the disease have changed, and now sponges appear with various symptoms of damage to the body, such as discoloration, tissue necrosis, the formation of brown patches and dirty-purple biofilms on some branches. These signs of the disease are accompanied by the mass death of sponges. We identified differences in microbiomes by sequencing 16S rRNA genes and found changes in the consortium of microorganisms of freshwater Baikal sponges. We found that the observed imbalance …

Structural And Functional Determinants Of Rodent And Human Surfactant Protein A: A Synthesis Of Binding And Computational Data, Armen Nalian, Todd M. Umstead, Ching-Hui Yang, Patricia Silveyra, Neal J. Thomas, Joanna Floros, Francis X. Mccormack, Zissis C. Chroneos

Faculty Publications

Surfactant protein A (SP-A) provides surfactant stability, first line host defense, and lung homeostasis by binding surfactant phospholipids, pathogens, alveolar macrophages (AMs), and epithelial cells. Non-primates express one SP-A protein whereas humans express two: SP-A1 and SP-A2 with core intra- and inter-species differences in the collagen-like domain. Here, we used macrophages and solid phase binding assays to discern structural correlates of rat (r) and human (h) SP-A function. Binding assays using recombinant rSP-A expressed in insect cells showed that lack of proline hydroxylation, truncations of amino-terminal oligomerization domains, and site-directed serine (S) or alanine (A) mutagenesis of cysteine 6 (C6S), …

Whole Leaf Photosynthetic Light Response In A Carnivorous Plant Species Sarracenia Alata, K. A. Hopkins, Dennis A. Gravatt

Faculty Publications

Photosynthetic light-response curves of mature leaves of Sarracenia alata were generated and characterized using a custom built chamber (2.79 L) capable of accommodating whole leaves, or pitchers, coupled to a LI-COR 6400XT Portable Photosynthesis System. In addition to generating light-response curves, chlorophyll content, leaf area, and dry mass measurements were obtained for each pitcher. Gas-exchange variables from the light-response curves are reported on a leaf area and dry mass basis. Calculated light-saturated photosynthesis was found to be 2.09 µmol(CO₂) m^-2 s^-1 with a light-saturation point of 315.14 µmol(photon) m^-2 s^-1, light-compensation point of …

Arachidin-1 And Arachidin-3 Modulation Of Rotavirus-Infected Ma104 Cells, Caleb M. Witcher, Rebekah Napier-Jameson, Hannah N. Lockwood, Macie N. Mattila, Stormey B. Wisdom, Luanna L. Saade Ferreira, Josephine Taylor, Beatrice Clack, Fabricio Medina-Bolivar, Judith M. Ball, Rebecca D. Parr

Faculty Publications

Rotavirus (RV) causes severe life-threatening diarrhea in young children and immunocompromised individuals. There are several licensed attenuated vaccines for young children, but there are no vaccines or antiviral therapeutics for immunocompromised patients of any age. Previously, our laboratory demonstrated that arachidin 1 (A1) and arachidin 3 (A3) decreases the number of infectious simian RV particles and RV non-structural protein 4 (NSP4) in a human intestinal cell line which suggests effects on RV replication. This study examined the effects of the arachidins on the human RV (Wa)-infected African green monkey kidney cell line, MA104. The addition of either A1 or A3 …

Data Collection Curated With An Application Ontology Describes The Methods And Results Upon Performing An Ex-Vivo Voltage-Clamp Assay On Outer Hair Cells Of The Mammalian Cochlea, Brenda Farrell, Jason Bengtson

Research Data

This data collection describes the electrical properties of outer hair cells isolated from the mammalian cochlea of the domestic guinea pig. This data was obtained by performing whole-cell patch clamp voltage clamp assay on cells and monitoring the electrical admittance during a DC voltage ramp. The membrane capacitance was then calculated at each membrane potential from this admittance, and the voltage-independent and voltage-dependent membrane capacitance was determined upon further analysis. In some case the DC conductance was also measured by interrogation of the cell with voltage-step function which was calculated from the change in the mean steady-state current with respect …

Embl2checklists: A Python Package To Facilitate The User-Friendly Submission Of Plant And Fungal Dna Barcoding Sequences To Ena, Michael Gruenstaeudl, Yannick Hartmaring

Biological Sciences Faculty Publications

Background The submission of DNA sequences to public sequence databases is an essential, but insufficiently automated step in the process of generating and disseminating novel DNA sequence data. Despite the centrality of database submissions to biological research, the range of available software tools that facilitate the preparation of sequence data for database submissions is low, especially for sequences generated via plant and fungal DNA barcoding. Current submission procedures can be complex and prohibitively time expensive for any but a small number of input sequences. A user-friendly software tool is needed that streamlines the file preparation for database submissions of DNA …

Interaction Of Seed Dispersal And Environmental Filtering Affects Woody Encroachment Patterns In Coastal Grassland, Natasha N. Woods, Benjamin L. Dows, Evan B. Goldstein, Laura J. Moore, Donald R. Young, Julie C. Zinnert

Biology Publications

Encroachment of woody plants into grasslands has occurred worldwide and includes coastal ecosystems. This conversion process is mediated by seed dispersal patterns, environmental filtering, and biotic interactions. As spatiotemporally heterogeneous, harsh environments, barrier islands present a unique set of challenges for dispersal and establishment. Environmental conditions act as filters on dispersed seeds, thereby influencing encroachment and distribution patterns. Seldom have patterns of propagule dispersal been considered in the context of woody encroachment. We quantified dispersal and post‐dispersal processes of an encroaching woody population of Morella cerifera relative to directional rate of encroachment and observed distribution patterns on an Atlantic coastal …