Biology Commons^™

Dax-1 Gene Expression Regulation In Prostate Cancer Cells Through The Activation Of Androgen Receptors, Ryan Jann, Roxxana Beltran

Creative Activity and Research Day - CARD

The nuclear hormone receptor DAX-1 (dosage-sensitive sex reversal, adrenal hypoplasia critical region, on chromosome X, gene 1) is associated with the development and progression of prostate cancer within human males. Previous studies on DAX-1 have suggested a repression of steroidogenesis, indicating an inverse correlation between DAX-1 and steroidogenic gene expressions. To further understand the role of DAX-1 in tumor growth and development, experimentation was performed on Androgen Receptor (AR) sensitive and insensitive prostate cancer cell lines. Analysis of the different gene expression patterns of prostate cancer cell lines (including a CRISPR DAX-1 negative cell line) under separate treatment conditions, provides …

Cloning And Expression Of Pseudomonas Aeruginosa Elastase For Elucidating The Pathophysiological Effect On Lung Tissue, Derek T. Draper

Biology Theses

Pseudomonas aeruginosa causes acute nosocomial as well as community acquired pneumonia. In cystic fibrosis patients, this organism causes recurrent infections and inflammation with a high rate of morbidity and mortality. To support research in elucidating the molecular mechanisms of Pseudomonas elastase (PE) on disease progression, PE was expressed in E. coli and the protein purified for further application. This study represents a valid experimental protocol to produce. Genomic DNA was isolated from P. aeruginosa and selected regions were amplified using PCR with lasB gene specification. Amplified DNA was ligated into plasmids and E. coli were transformed to support the …

Mallampati Scoring And Its Relation To Obstructive Sleep Apnea, Austin Korczak

Honors Capstones

According to the American Sleep Apnea Association potentially 80% of moderate to severe cases of Obstructive Sleep Apnea (OSA) go undiagnosed with even optimistic estimates stating that at least 22 million Americans are afflicted by the disorder. These numbers are expected to continue to increase due to the rising rates of obesity in America. As a result, reliable criteria that can help physicians accurately predict the presence of an underlying sleep disorder, whose symptoms are masked during the day, is highly sought after. The objective of this research is to begin defining these criteria via a literature review of articles …

Neural Expression And Function Of Autism Candidate Genes In Zebrafish, Elyse P. Kite

Biology Theses

The Autism Spectrum Disorders (ASD) refer to a large heterogeneous set of developmental disorders defined by two behavioral domains: 1) Impairment of social comprehension and abnormal development of social communication, and 2) the presence of stereotypical and repetitive behaviors. The etiology of ASD is complex, with both genetic and environmental components. De novo and inherited mutations within DPP6 and PSMD12 have been identified within individuals diagnosed with ASD suggesting an etiologic role. Understanding the functionality of these genes could lead novel treatments for ASD. Zebrafish were utilized as a model system for the assessment of functionality of the orthologous genes …

A Longitudinal Cline Characterizes The Genetic Structure Of Human Populations In The Tibetan Plateau, Choongwon Jeong, Benjamin M. Peter, Buddha Basnyat, Maniraj Neupane, Geoff Childs, Sienna Craig, John Novembre, Anna Di Rienzo

Dartmouth Scholarship

Indigenous populations of the Tibetan plateau have attracted much attention for their good performance at extreme high altitude. Most genetic studies of Tibetan adaptations have used genetic variation data at the genome scale, while genetic inferences about their de- mography and population structure are largely based on uniparental markers. To provide genome-wide information on population structure, we analyzed new and published data of 338 individuals from indigenous populations across the plateau in conjunction with world- wide genetic variation data. We found a clear signal of genetic stratification across the east- west axis within Tibetan samples. Samples from more eastern locations …

Sf3b1 Is A Stress-Sensitive Splicing Factor That Regulates Both Hsf1 Concentration And Activity, Karen S. Kim Guisbert, Eric Guisbert

Biomedical Engineering and Sciences Faculty Publications

The heat shock response (HSR) is a well-conserved, cytoprotective stress response that activates the HSF1 transcription factor. During severe stress, cells inhibit mRNA splicing which also serves a cytoprotective function via inhibition of gene expression. Despite their functional interconnectedness, there have not been any previous reports of crosstalk between these two pathways. In a genetic screen, we identified SF3B1, a core component of the U2 snRNP subunit of the spliceosome, as a regulator of the heat shock response in Caenorhabditis elegans. Here, we show that this regulatory connection is conserved in cultured human cells and that there are at least …

Activity Of Distinct Growth Factor Receptor Network Components In Breast Tumors Uncovers Two Biologically Relevant Subtypes, Mumtahena Rahman, Shelley M. Macneil, David F. Jenkins, Gajendra Shrestha, Sydney R. Wyatt, Jasmine A. Mcquerry, Stephen R. Piccolo, Laura M. Heiser, Joe W. Gray, W. Evan Johnson, Andrea H. Bild

Faculty Publications

Background: The growth factor receptor network (GFRN) plays a significant role in driving key oncogenic processes. However, assessment of global GFRN activity is challenging due to complex crosstalk among GFRN components, or pathways, and the inability to study complex signaling networks in patient tumors. Here, pathway-specific genomic signatures were used to interrogate GFRN activity in breast tumors and the consequent phenotypic impact of GRFN activity patterns.

Methods: Novel pathway signatures were generated in human primary mammary epithelial cells by overexpressing key genes from GFRN pathways (HER2, IGF1R, AKT1, EGFR, KRAS (G12V), RAF1, BAD). The pathway analysis toolkit Adaptive Signature …

The Role Of Tributaries In Structuring Mussel Communities, Cassie M. Vaughan

Biology Theses

Mussel species composition in tributaries compared to the river mainstem, and the influence of tributaries on the river mainstem of mussel communities, are poorly understood. This paper aims to understand differences in mussel habitat associations between tributaries and the Neches River mainstem and if the mussel communities are nested in tributaries. During the months June through October in 2016, 28 tributaries and 22 mainstem sites were surveyed in the Neches River using tactile time search. A total of 3,620 individuals were collected, of which 44.5% were collected from tributaries. However, only eight of the 28 tributaries contained mussels, while every …

Growth Of Orbicella Faveolata In La Parguera, Puerto Rico, Darren B. Marshall

HCNSO Student Theses and Dissertations

Reef-building corals are subject to high amounts of stress, including pollution and rising sea surface temperatures due to climate change. These factors can affect the ability of corals to produce their calcium carbonate skeletons. Evaluation of the effects of climate change may be facilitated by evaluation of records of coral skeletal growth over a long period of time. The aim of this study was to evaluate skeletal growth of the coral Orbicella faveolata in La Parguera, Puerto Rico over a 32-year period. For this, 14 Orbicella faveolata core samples were collected from corals at two reefs (1.2 km apart) in …

Salting Our Freshwater Lakes, Hilary A. Dugan, Sarah L. Bartlett, Samantha M. Burke, Jonathan P. Doubek, Flora Krivak-Tetley

Dartmouth Scholarship

The highest densities of lakes on Earth are in north temperate ecosystems, where increasing urbanization and associated chloride runoff can salinize freshwaters and threaten lake water quality and the many ecosystem services lakes provide. However, the extent to which lake salinity may be changing at broad spatial scales remains unknown, leading us to first identify spatial patterns and then investigate the drivers of these patterns. Significant decadal trends in lake salinization were identified using a dataset of long-term chloride concentrations from 371 North American lakes. Landscape and climate metrics calculated for each site demonstrated that impervious land cover was a …

Accumulation And Expression Of Multiple Antibiotic Resistance Genes In Arcobacter Cryaerophilus That Thrives In Sewage, Jess A. Millar, Rahul Raghavan

Biology Faculty Publications and Presentations

We explored the bacterial diversity of untreated sewage influent samples of a wastewater treatment plant in Tucson, AZ and discovered that Arcobacter cryaerophilus, an emerging human pathogen of animal origin, was the most dominant bacterium. The other highly prevalent bacteria were members of the phyla Bacteroidetes and Firmicutes, which are major constituents of human gut microbiome, indicating that bacteria of human and animal origin intermingle in sewage. By assembling a near-complete genome of A. cryaerophilus, we show that the bacterium has accumulated a large number of antibiotic resistance genes (ARGs) probably enabling it to thrive in the wastewater. We also …

Repeated Evolution Of Digital Adhesion In Geckos: A Reply To Harrington And Reeder, Tony Gamble, E. Greenbaum, T. R. Jackman, A. P. Russell, A. M. Bauer

Biological Sciences Faculty Research and Publications

We published a phylogenetic comparative analysis that found geckos had gained and lost adhesive toepads multiple times over their long evolutionary history (Gamble et al., PLoS One, 7, 2012, e39429). This was consistent with decades of morphological studies showing geckos had evolved adhesive toepads on multiple occasions and that the morphology of geckos with ancestrally padless digits can be distinguished from secondarily padless forms. Recently, Harrington & Reeder (J. Evol. Biol., 30, 2017, 313) reanalysed data from Gamble et al. (PLoS One, 7, 2012, e39429) and found little support for the multiple origins hypothesis. Here, we …

Student Misconceptions About Plants – A First Step In Building A Teaching Resource, April N. Wynn, Irvin L. Pan, Elizabeth E. Rueschhoff, Maryann Herman, Kathleen Archer

Biology Faculty/Staff Publications

Plants are ubiquitous and found in virtually every ecosystem on Earth, but their biology is often poorly understood, and inaccurate ideas about how plants grow and function abound. Many articles have been published documenting student misconceptions about photosynthesis and respiration, but there are substantially fewer on such topics as plant cell structure and growth; plant genetics, evolution, and classification; plant physiology (beyond energy relations); and plant ecology. The available studies of misconceptions held on those topics show that many are formed at a very young age and persist throughout all educational levels. Our goal is to begin building a central …

Pore Water Salinity Drives Brackish Vegetation Change In Salt Marsh Tidal Restoration, Shri Andrea L. Verrill Ms

All Student Scholarship

Salt marsh vegetation plays an important role in building and maintaining elevation on the marsh surface. For marshes to persist as sea-level-rise (SLR) occurs, the marsh accretion process must increase elevation at a rate greater than or equal to the rate of SLR. If salt marshes do not maintain elevation above sea level, salt marshes will drown, and associated benefits to humans, fish, and wildlife, and their contribution to the health of estuarine and marine ecosystems will be lost. Salt tolerant plant species are adapted to frequent and prolonged periods of inundation with seawater and typically maintain elevation where they …

Enzyme Characterization Of Sabath Family Members, Troy Burtchett

Honors Theses

Enzymes can have many different functions within an organism. One such common function is methylation. The SABATH family of enzymes perform methylation of various organic acids. Many of the members of this family of enzymes have become specialized in the acid they methylate. For example: salicylic acid methyl transferase (SAMT) will primarily methylate salicylic acid, and benzoic acid methyl transferase (BAMT) will primarily methylate benzoic acid. By comparing the sequence of these enzymes, it has been found that a conserved region consisting of the sequence SSYSLMWLS appears in some form across all the members of the SABATH family. The 6 …

Transcriptomic Analysis Of Maternally Provisioned Cues For Phenotypic Plasticity In The Annual Killifish, Austrofundulus Limnaeus, Amie L. Romney, Jason E. Podrabsky

Biology Faculty Publications and Presentations

Background: Genotype and environment can interact during development to produce novel adaptive traits that support life in extreme conditions. The development of the annual killifsh Austrofundulus limnaeus is unique among vertebrates because the embryos have distinct cell movements that separate epiboly from axis formation during early development, can enter into a state of metabolic dormancy known as diapause and can survive extreme environmental conditions. The ability to enter into diapause can be maternally programmed, with young females producing embryos that do not enter into diapause. Alternately, embryos can be programmed to “escape” from diapause and develop directly by both maternal …

Water Quality Characteristics Of Reservoir Tailwater Recovery Systems Associated With Agriculture Production In Northeast Arkansas, Leevi Trull Haas

Student Theses and Dissertations

Reservoir tailwater recovery systems (R-TWRS) have helped shift considerations for a broader array of water storage and irrigation techniques for conventional crop production in the Mississippi River basin under conditions of declining recharge and developing cones of depression in the Mississippi Alluvial Aquifer (alluvial aquifer). Sustaining groundwater supplies further emphasizes potential water quality changes that can occur within and downstream of production sites. This study examined water quality characteristics throughout three reservoir tailwater recovery systems (R-TWRS) during events of water movement from irrigation, significant precipitation, and drawdown. While orthophosphate, dissolved nitrate, and nitrite concentrations were significantly different among R-TWRS and …

Genome Sequence Of Staphylococcus Saprophyticus Dpc5671, A Strain Isolated From Cheddar Cheese, Caitríona M. Guinane, Et. Al.

Department of Biological Sciences Publications

The draft genome sequence of Staphylococcus saprophyticus DPC5671, isolated from cheddar cheese, was determined. S. saprophyticus is a common Gram-positive bacterium detected on the surface of smear-ripened cheese and other fermented foods.

GENOME ANNOUNCEMENT

Determining The Effects Of Palmitoylation On Rho Family Gtpase Tcl Gtp Binding Activity Using Palmitoyl Co-A, Grace Young

Honors Capstones

Capstone submitted as a graduation requirement for BSU Honors Program.

Characterization Of A Putative Ccm Transporter, Cia8, In Chlamydomonas Reinhardtii Using Rnai Knockdown Mutants, Joshua Schwartzenburg

Honors Capstones

No abstract provided.

Nutritional Effects On Age-Related Changes In T-Cell Differentiation And Function, Michelle Chen

Whittier Scholars Program

T-cells are a type of white blood cell that in our bodies, scanning for cellular abnormalities and infections, thus making them essential for human immunity. However, due to the effects of aging, our bodies diminish the production of T cells and as a result, elderly individuals do not respond to immune disturbance as robustly as young individuals. In this experiment, I am examining the Jurkat T-cell, a human T lymphocyte cell line, viability at different treatment concentrations of the natural compounds, resveratrol and curcumin, and two cancer treatment drugs, cisplatin and bleomycin. These natural compounds, resveratrol and curcumin, have been …

Implementation Of A Biology Summer Bridge Program For First-Year Biology Majors, Madelyn Aittama

Honors Theses

Students are entering higher education at an escalated rate, but many are unprepared for the rigorous coursework that lies ahead of them. As nationwide programs are continuously being implemented throughout high schools to better prepare students for college life, many students are still not equipped with the skills necessary to succeed in obtaining a bachelor’s degree. Many students feel discouraged and inadequate when they perform below their academic expectations, and for a large portion of students pursuing higher education, this results in discontinuing their education. While retention rates amongst STEM (science, technology, engineering and mathematics) students are particularly low, the …

The Bees Of A.L. Mangham Jr. Regional Airport, Nacogdoches, Texas, Ryan J. Pingedot, Daniel J. Bennett

Undergraduate Research Conference

The United States is home to about 4,000 species of native bees, and many are critically important due to the pollination services they provide (Buchman & Nabhan 1996). Most of these are inconspicuous, solitary bees that nest in the ground. In recent years, a number of bee species have been shown to be in decline (Burkle 2013). Due to these declines, it is important to study and provide habitat for local bee populations.

As a result of periodic mowing, the surroundings of the A.L. Mangham Jr. Regional Airport in Nacogdoches County, Texas provide a grassy, prairie-like habitat that results in …

Removable Discontinuity: Crispr, Gene Drives, And Bioethics, Emily Dunnahoe

Undergraduate Research Conference

This paper questions whether bioethical scrutiny has been devoted to the ethical dilemmas that have arisen with advancements of CRISPR-Cas 9 gene editing techniques, particularly its use in conjunction with gene drive applications. Therefore, the trend of genetic research using both gene drives and CRISPR-Cas 9 systems must be established, while also simultaneously observing the trend of bioethical scholarly works. The tabulation of all articles from 2012 to 2015 from selected genetic journals yielded a significant increase in articles relating to CRISPR, while no articles were found in their selected bioethical counterparts for the same period. Similarly, no significant CRISPR/gene …

The Addition Of Arachidin 1 Or Arachidin 3 To Human Rotavirus-Infected Cells Inhibits Viral Replication And Alters The Apoptotic Cell Death Pathway, Macie N. Mattila, Caleb M. Witcher, Rebekah Napier-Jameson, Hannah N. Lockwood, Josephine Taylor, Beatrice A. Clack, Judith M. Ball, Fabricio Medina Bolivar, Rebecca D. Parr

Undergraduate Research Conference

Rotavirus (RV) infections are a leading cause of severe gastroenteritis in infants and children under the age of five. There are two vaccines available in the United States and one in India that can be administered early in childhood, however they only protect against specific strains1. From our previous work, both arachidin-1 (A1) and arachidin-3 (A3) from peanut (Arachis hypogaea) hairy root cultures significantly inhibit simian RV replication2,3,4. The purpose of this study was to determine if a human intestinal cell line, HT29.f8, infected with a human RV, Wa, was affected by A1 and A3. Cell viability assays were utilized …

The Methods Used For Eradication Of Polio Versus The Defense Efforts That Are Being Conducted For Global Defense Against Ebola, Kalyn Johnson

Undergraduate Research Conference

Poliovirus eradication has been a long-lasting and difficult process that has become a global issue. The World Health Organization and the European Union have been trying to end the terrible reign of this abhorrent disease since the 1980s and are continually fighting the virus today. Poliomyelitis is an Old World disease, much like smallpox. It has been easily, through a twenty year process, eradicable through mass vaccination and circle vaccination.

However, as poliovirus is coming to the end of its reign, a more recent danger lurks nearby. Ebola virus is considered a non-traditional disease in that it requires more developed …

Determination Of The Binding Site Of Adenovirus E4 11k On The Cellular Protein Ddx6, Clint E. Edmunds, Courtney F. Moon

Georgia College Student Research Events

Adenovirus is a double-stranded DNA virus that is responsible for localized infections, such as upper respiratory tract infections. The virus takes over the target cell through many mechanisms, in particular taking control of host cell gene expression mechanisms as well as controlling host cell protein synthesis machinery. One of the functions of the adenovirus E4 11k protein is in turning off host cell protein synthesis and regulating late viral gene expression. E4 11k from all adenovirus subclasses has been shown to disrupt cellular RNA processing bodies (P-bodies), and adenovirus serotype 5 has a direct interaction with a P-body protein, Ddx6. …

Gregariousness Does Not Vary With Geography, Developmental Stage, Or Group Relatedness In Feeding Redheaded Pine Sawfly Larvae, John W. Terbot Ii, Ryan L. Gaynor, Catherine R. Linnen

Biology Faculty Publications

Aggregations are widespread across the animal kingdom, yet the underlying proximate and ultimate causes are still largely unknown. An ideal system to investigate this simple, social behavior is the pine sawfly genus Neodiprion, which is experimentally tractable and exhibits interspecific variation in larval gregariousness. To assess intraspecific variation in this trait, we characterized aggregative tendency within a single widespread species, the redheaded pine sawfly (N. lecontei). To do so, we developed a quantitative assay in which we measured interindividual distances over a 90-min video. This assay revealed minimal behavioral differences: (1) between early-feeding and late-feeding larval instars, …

Time Lags Associated With Effects Of Oceanic Conditions On Seabird Breeding In The Salish Sea Region Of The Northern California Current System, Rashida S. Smith, Lynelle M. Weldon, James L. Hayward, Shandelle M. Henson

Faculty Publications

No abstract provided.

Pattern And Process In The Radiation Of Ground-Dwelling Squirrels, Bryan Stephen Mclean

Biology ETDs

What causes biological diversity to be unevenly apportioned across the Tree of Life? The pattern is widespread and well-characterized; but our understanding of processes underlying the taxonomic, phenotypic, and ecological disparities of clades remains incomplete. At least some of this disparity is due to clade-specific differences in the ability to respond to ecological opportunity, whereby access to, and exploitation of, different resources in ecological time drives evolutionary divergence and adaptive radiation. However, not all clades respond equivalently to ecological opportunity, and considerable heterogeneity therefore exists in diversification patterns across radiations.

This dissertation focuses on patterns and processes of diversification in …