Biology Commons^™

Identifying The Inflammatory Pathways Of Genes Upregulated In Ladmac Cells Exposed To Bcm7, Oumlissa Persaud, Mary Kusenda

Biology & Chemistry Undergraduate Theses

Casein is the main protein present in milk and other dairy products. Beta-casein is one of the 3 major proteins in milk. Beta-casomorphin-9 (BCM9) was the original beta-casein protein found in milk, specifically cow's milk. However, a genetic mutation occurred and the 67th amino acid in the BCM9, proline, mutated to histidine (P67H) creating Beta-casamorphin-7 (BCM7). The protein BCM7 gets cleaved in the small intestine, making it readily absorbed in the body. In previous unpublished studies they found that murine leukocytes (LADMAC cells) showed an increase in inflammation when exposed to BCM7, as compared to BCM9. Therefore, the goal of …

Field Evidence Challenges The Often-Presumed Relationship Between Early Male Maturation And Female-Biased Sexual Size Dimorphism, Marie Claire Chelini, Eileen Hebets

Eileen Hebets Publications

Female-biased sexual size dimorphism (SSD) is often considered an epiphenomenon of selection for the increased mating opportunities provided by early male maturation (i.e., protandry). Empirical evidence of the adaptive significance of protandry remains nonetheless fairly scarce. We use field data collected throughout the reproductive season of an SSD crab spider, Mecaphesa celer, to test two hypotheses: Protandry provides fitness benefits to males, leading to female-biased SSD, or protandry is an indirect consequence of selection for small male size/large female size. Using field-collected data, we modeled the probability of mating success for females and males according to their timing of …

Characterization Of A Novel Mitochondrial Plasmid In Brassica, Mackenzie Strehle

UCARE: Research Products

Possessing some of the largest and most complex genomes of any eukaryotic organelles, plant mitochondria are notorious for their rapidly rearranging genetic framework. In addition to containing a large and complex mitochondrial genome, the mitochondria of several plants in the genus Brassica have also been shown to contain an independent, self-replicating linear plasmid. Interestingly, the plasmid appears to be able to move independently between the cytoplasm and the mitochondria, and it can be paternally inherited, unlike the rest of the mitochondrial genome. The plasmid also has features similar to those of adenoviruses, including terminal inverted repeats and covalently bound proteins …

Herpetological Collections At Pittsburg State University: Assessing Collecting Patterns And Analysis Of Spatial And Temporal Origin Of Specimens., Natalia Agostini Schneider

Electronic Theses & Dissertations

Natural History Collections are a rich source of biological data. Each specimen contains data for that species’ presence for a specific location and time, providing researchers with essential biological information. Importantly, this information can be preserved and re-evaluated for hundreds of years. To maintain specimens through time, good curation protocols are essential. The Herpetology Collection (henceforth HC) at Pittsburg State University houses 1,631 specimens, representing 181 species and subspecie collected from 23 U.S. states, Mexico and Manitoba, Canada. The majority of specimens (78.6%) were collected from the four-state area (Kansas, Missouri, Arkansas and Oklahoma). Specimens collected exclusively in Kansas comprise …

Bottom-Up Control Of Parasites, David S. Johnson, Richard W. Heard

Faculty Publications

Parasitism is a fundamental ecological interaction. Yet we understand relatively little about the ecological role of parasites compared to the role of free-living organisms. Bottom-up theory predicts that resource enhancement will increase the abundance and biomass of free-living organisms. Similarly, parasite abundance and biomass should increase in an ecosystem with resource enhancement. We tested this hypothesis in a landscape-level experiment in which salt marshes (60,000 m2 each) received elevated nutrient concentrations via flooding tidal waters for 11 yr to mimic eutrophication. Nutrient enrichment elevated the densities of the talitrid amphipod, Orchestia grillus, and the density and biomass of its trematode …

Reversible Plasticity Of Detrusor Smooth Muscle: Evidence For A Key Role Of “Slipping” Actomyosin Cross-Bridges In The Control Of Urinary Bladder Compliance, Thomas J. Eddinger

Biological Sciences Faculty Research and Publications

No abstract provided.

Photosensing And Thermosensing By Phytochrome B Require Both Proximal And Distal Allosteric Features Within The Dimeric Photoreceptor, E Sethe Burgie, Adam N. Bussell, Shu-Hui Lye, Tong Wang, Weiming Hu, Katrice E. Mcloughlin, Erin L. Weber, Huilin Li, Richard D. Vierstra

Biology Faculty Research

Phytochromes (Phys) encompass a diverse collection of bilin-containing photoreceptors that help plants and microorganisms perceive light through photointerconversion between red light (Pr) and far-red light (Pfr)-absorbing states. In addition, Pfr reverts thermally back to Pr via a highly enthalpic process that enables temperature sensation in plants and possibly other organisms. Through domain analysis of the Arabidopsis PhyB isoform assembled recombinantly, coupled with measurements of solution size, photoconversion, and thermal reversion, we identified both proximal and distal features that influence all three metrics. Included are the downstream C-terminal histidine kinase-related domain known to promote dimerization and a conserved patch just upstream …

Major Complications And Management Options Of Obesity, Shreja Patel, Mir Saleem

Biology Faculty Articles

Obesity is a disorder that consists of many factors, which has become a global epidemic since it is associated with various crucial diseases, such as diabetes, cardiovascular diseases, hypertension, stroke, sleep apnea, as well as other conditions. In order to manage obesity, a variety of strategies are taken into account in order to direct attention on those with current weight problems as well as those that are at a high risk of developing obesity. Therefore, obesity prevention should be focused during the early ages as there is a high risk of developing it in the later years. This article focuses …

Fundamentals Of Biology Research Project [Biology], Ana Lucia Fuentes, Maria Entezari

Open Educational Resources

1. The goal of this initiative is to improve students’ learning of the subject while developing their Inquiry and Problem-Solving competencies as well as their numeracy, written, digital and oral communication abilities.
2. A “flipped-class” approach will be taken to present different topics ahead of the practical laboratory experiences. Topics will be presented with PowerPoints and/or videos posted on Blackboard.
3. Students will be given a “low stakes” quiz at the beginning of each laboratory session to assess their knowledge and understanding of the posted material.
4. A research project, introduced at the beginning of the semester, will be used as the backbone to …

The Folded K-Spectrum Kernel: A Machine Learning Approach To Detecting Transcription Factor Binding Sites With Gapped Nucleotide Dependencies, Abdulkadir Elmas, Xiaodong Wang, Jacqueline M. Dresch

Biology

Understanding the molecular machinery involved in transcriptional regulation is central to improving our knowledge of an organism’s development, disease, and evolution. The building blocks of this complex molecular machinery are an organism’s genomic DNA sequence and transcription factor proteins. Despite the vast amount of sequence data now available for many model organisms, predicting where transcription factors bind, often referred to as ‘motif detection’ is still incredibly challenging. In this study, we develop a novel bioinformatic approach to binding site prediction. We do this by extending pre-existing SVM approaches in an unbiased way to include all possible gapped k-mers, representing different …

Hummingbird Foraging Preference: The Hierarchical Impacts Of Color, Position, And Concentration On Visitation Frequency, Erin O'Connor

Independent Study Project (ISP) Collection

Hummingbirds are well adapted to efficiently locate high quality nectar sources, but relatively few studies have examined the mechanisms of that process under natural conditions in the field. This study investigates the visual signals that allow hummingbirds to do just that, as well as the external factors that limit their choices in foraging. More specifically, feeder color and nectar concentration were manipulated to determine the effect of those independent variables on visitation frequency. An initial experiment was conducted in order to explore color preference among the visiting species. Red, orange, and blue feeders were filled with nectar of equal concentrations …

Prevalence Of Moniliophthora Roreri In Theobroma Cacao In Relation To Clone Variety, Community Composition, Environmental Factors In An Organic Cacao Farm In Charagre, Bocas Del Toro, Panamá: A Case Study, Kara Eckberg

Independent Study Project (ISP) Collection

Moniliophthora roreri, or Frosty Pod Rot (FPR) is a widespread pathogen that affects the fruit of Theobroma cacao, a tree commonly known as the cacao tree. Often, cultivators seek to control spread of M. roreri through fungicidal compounds. However, these fungicides place selective pressure for resistance on M. roreri. Additionally, they can have adverse environmental and human health effects and are difficult to integrate into practice for smallholders. Therefore organic farms in Bocas del Toro in western Panama, have turned to biocontrol agents to reduce the spread of M. roreri. These strategies include increasing hybrid variety, modifying community composition, altering …

Prey Naïveté And Predator-Prey Interactions Between Pterois Volitans, Pomacentridae, And Tetraodontidae In Two Reefs In The Guna Yala Archipelago, Panama, Jesse Garrett-Larsen

Independent Study Project (ISP) Collection

The invasion of Pterois volitans along the Atlantic coast of the Americas is one of the top marine conservation issues of the century. Prey naïveté has been suggested as a mechanism for the success of P. volitans, but conclusive field observations have not been completed. This study tested for prey naïveté in situ by comparing time spent by Pomacentridae and Tetraodontidae in close proximity to P. volitans and a native predator, Cephalopholis cruentata. Difference in time spent by Pomacentridae and Tetraodontidae in the presence of the two predators was observed. The predators P. volitans and C. cruentata were sequentially observed …

Regulation Of Voltage-Gated K+ Currents In Motor Neurons: Activity-Dependence And Neuromodulation, Dalia Salloum

Dissertations

Neuronal output is shaped by extrinsic modulation as well as modulation of intrinsic properties of individual neurons, mediated by activity-dependent changes in the expression levels of voltage-gated ionic currents. Activity-dependent regulation of ionic currents is a mechanism by which electrical output of a neuron feeds back onto the expression of its own ion channels to alter cellular excitability in response to stimuli. Neurons alter their intrinsic properties to achieve long lasting changes involved in development, learning and memory formation and vital functions of organ systems such as locomotion and digestion. At the same time, plasticity of neuronal excitability driven by …

Effects Of Winter And Summer Thermal Variability Regimes On Growth And Metabolism In Brook Trout (Salvelinus Fontinalis), Spenser Chicoine

All NMU Master's Theses

Brook trout (Salvelinus fontinalis) is a cold-water species with a narrow range of thermal tolerance. Climate change projections show that in addition to increases in average temperatures worldwide, daily thermal variability is increasing. Such conditions could prove challenging for brook trout and other ectotherms that are adapted to small temperature ranges. This research investigates how the growth and metabolic capacities of brook trout respond to long-term exposure to thermal variation. Groups of fish were reared under three thermal regimes: constant baily temperature, a 4°C daily range, and an 8°C daily range in a controlled lab setting. This was …

Marine Reserves Promote Coral Reef Resilience By Mitigating Human Impacts Through The Restoration Of Parrotfish Populations, Increasing Their Reproductive Output And Seeding Neighboring Overfished Reefs, Brian L. Stockwell

Biological Sciences Theses & Dissertations

Coral reefs are some of the most productive ecosystems on the planet, providing fisheries resources for over a billion people with billions of dollars in revenue from tourism for developing nations. Coral reefs are under threat from overfishing and water pollution, resulting in less productive algae dominated reefs. Marine reserves are widely expected to promote the resilience of reefs by protecting and increasing the abundance of herbivorous fishes that can graze on algae, therefore directly or indirectly preventing coral to algal phase shifts. However, the ability of marine reserves to mitigate human impacts, restore herbivorous fish populations and seed nearby …

Modeling The Niche Space Of Coral Assemblages Along The Florida Reef Tract, Kelly Renee Mccaffrey

Theses and Dissertations

Quantifying the niche space of organisms is critical for conservation and restoration purposes. Yet, with warming oceans, we cannot assume that the localities that were optimal for species in the past remain so today or will be optimal for that species in the future. Over the next century, the climate is predicted to drive sea-surface temperatures to even higher levels, consequently increasing the risk of mass coral bleaching and disease outbreaks, and potentially reducing the niche space available to corals. Yet, there is considerable temporal and spatial variation in coral bleaching, disease prevalence, and mortality. Using data collected from 2398 …

Clinical And Genome-Wide Analysis Of Cisplatin-Induced Peripheral Neuropathy In Survivors Of Adult-Onset Cancer, M. Eileen Dolan, Omar El Charif, Heather E. Wheeler, Eric R. Gamazon, Shirin Ardeshir-Rouhani-Fard, Patrick Monahan, Darren R. Feldman, Roebrt J. Hamilton, David J. Vaughn, Clair J. Beard, Chunkit Fung, Jeri Kim, Sophie D. Fossa, Daniel L. Hertz, Taisei Mushiroda, Michiaki Kubo, Lawrence H. Einhorn, Nancy J. Cox, Louis B. Travis

Biology: Faculty Publications and Other Works

No abstract provided.

Fast Shoreline Erosion Induced By Ship Wakes In A Coastal Lagoon: Field Evidence And Remote Sensing Analysis, Luca Zaggia, Giuliano Lorenzetti, Giorgia Manfe, Gian Marco Scarpa, Emanuela Molinaroli, Kevin E. Parnell, John Rapaglia, Maria Gionta, Tarmo Soomere

Biology Faculty Publications

An investigation based on in-situ surveys combined with remote sensing and GIS analysis revealed fast shoreline retreat on the side of a major waterway, the Malamocco Marghera Channel, in the Lagoon of Venice, Italy. Monthly and long-term regression rates caused by ship wakes in a reclaimed industrial area were considered. The short-term analysis, based on field surveys carried out between April 2014 and January 2015, revealed that the speed of shoreline regression was insignificantly dependent on the distance from the navigation channel, but was not constant through time. Periods of high water levels due to tidal forcing or storm surges, …

Effects Of Lightning On Trees: A Predictive Model Based On In Situ Electrical Resistivity, Evan M. Gora, Phillip M. Bitzer, Jeffrey C. Burchfield, Stefan A. Schnitzer, Stephen P. Yanoviak

Biological Sciences Faculty Research and Publications

The effects of lightning on trees range from catastrophic death to the absence of observable damage. Such differences may be predictable among tree species, and more generally among plant life history strategies and growth forms. We used field‐collected electrical resistivity data in temperate and tropical forests to model how the distribution of power from a lightning discharge varies with tree size and identity, and with the presence of lianas. Estimated heating density (heat generated per volume of tree tissue) and maximum power (maximum rate of heating) from a standardized lightning discharge differed 300% among tree species. Tree size and morphology …

Microbiology For Allied Health Students, Molly Smith, Sara Selby

Biological Sciences Open Textbooks

This open textbook is a remix of Openstax Microbiology, CC-BY 4.0, and created through an Affordable Learning Georgia Round Six Textbook Transformation Grant.

The textbook has the following supplemental materials within this repository:

This is a collection of instructional materials for the following open textbook and lab manual:

• Microbiology for Allied Health Students Lab Manual
• Microbiology for Allied Health Students Instructional Materials

Authors' Description:

Microbiology for Allied Health Students is designed to cover the scope and sequence requirements for the single semester Microbiology course for non-majors and allied health students. The book presents the core concepts of microbiology …

Microbiology For Allied Health Students: Lab Manual, Molly Smith, Sara Selby

Biological Sciences Open Textbooks

This open lab manual is a remix of Openstax Microbiology, CC-BY 4.0, and created through an Affordable Learning Georgia Round Six Textbook Transformation Grant.

The lab manual was made to be used with the remixed textbook Microbiology for Allied Health Students, and the textbook has a set of Instructional Materials.

Authors' Description:

This lab manual was created to support a microbiology course for allied health students.

The first section of the manual was adapted from the OpenStax Microbiology textbook, of which a remixed version, Microbiology for Allied Health Students, is used as the text for the …

Tracing The Genetic Footprints Of The Redbelly Yellowtail Fusilier, Caesio Cuning, Across Multiple Spatial And Evolutionary Scales, Amanda Susanne Ackiss

Biological Sciences Theses & Dissertations

Overfishing is one of the most pervasive threats to coral reef ecosystems, and management of these multi-species resources is hampered by limited species-specific population level information. The reefs in the western tropical Pacific Ocean, including the Coral Triangle, are the most bio-diverse in the world. Home to more than 400 million people, this region contains some of the most threatened coral reef ecosystems. Presented here is the first comprehensive analysis of the genetic structure of Caesio cuning, planktivorous fish inhabiting reefs in the Coral Triangle and western Pacific Ocean. Data from both classical Sanger and next-generation sequencing were analyzed …

Assessment Of Intra And Interregional Genetic Variation In The Eastern Red-Backed Salamander, Plethodon Cinereus, Via Analysis Of Novel Microsatellite Markers, Alexander C. Cameron, Jeffry J. Anderson, Robert B. Page

Biology Faculty Publications (Archived)

The red-backed salamander (Plethodon cinereus) has long-served as a model system in ecology, evolution, and behavior, and studies surveying molecular variation in this species have become increasingly common over the past decade. However, difficulties are commonly encountered when extending microsatellite markers to populations that are unstudied from a genetic perspective due to high levels of genetic differentiation across this species’ range. To ameliorate this issue, we used 454 pyrosequencing to identify hundreds of microsatellite loci. We then screened 40 of our top candidate loci in populations in Virginia, Pennsylvania, and Ohio—including an isolated island population ~ 4.5 km off the …

Life History And Management Methods For Blueline Tilefish (Caulolatilus Microps) From The United States Mid-Atlantic Region, Michael A. Schmidtke

OES Theses and Dissertations

Blueline tilefish (Caulolatilus microps) have recently undergone an increase in landings from waters off the US Mid-Atlantic region (Virginia-Massachusetts). Currently, life history characteristics of blueline tilefish in this area are undescribed. Additionally, appropriate indices of population abundance are not available for this region, necessitating the use of data-limited management methods to set restrictions for harvest of blueline tilefish in this area. This dissertation describes growth and reproductive characteristics of blueline tilefish caught off the coast of Virginia and explores improvements of data-limited management methods that have been applied to blueline tilefish in the US Mid-Atlantic. Blueline tilefish from …

Biology And Impacts Of Leech Infestation In Largemouth Bass (Micropterus Salmoides) In Back Bay, Virginia, Amanda Nicole Pomposini

Biological Sciences Theses & Dissertations

Back Bay is an oligohaline coastal bay in Southeast Virginia, USA. The Oregon Inlet along the Outer Banks of North Carolina is the only significant salinity source to the Bay via the Pamlico and Currituck Sounds of North Carolina. Today Back Bay is considered a brackish ecosystem with salinity of 2004, leeches have been observed in the oral cavities of Largemouth Bass (Micropterus salmoides) in Back Bay. Leeches (Myzobdella lugubris) have previously been documented in the oral cavities of largemouth bass in the Currituck Sound. In 2009, the Virginia Department of Game and Inland Fisheries (VDGIF) …

Use Of Gene Editing In Usda Research, Mark R. Mclellan, Patsy Brannon, Adriana Campa, Carrie Castille, Steven Daley-Laursen, Roch Gaussoin, Govind Kannan, Mark Lawrence, Dawn Thilmany

Biology Faculty Publications and Presentations

The Science Advisory Council was established in FY2016 as a subcommittee of the National Agricultural Research, Extension, Education, and Economics (NAREEE) Advisory Board by the Chief Scientist as a result of recommendations from the 2012 report on Agricultural Preparedness by the President’s Council of Advisors on Science and Technology. The Council's charge is to provide advice and guidance, on a scientific basis, on the overall strength, practicality, and direction of agricultural research, including emerging technology and scientific issues and report any findings publicly to the NAREEE Advisory Board.

The USDA Chief Scientist first asked the Council to examine rigor and …

There’S More Than One Way To Climb A Tree: Limb Length And Microhabitat Use In Lizards With Toe Pads, Travis J. Hagey, Scott Hart, Matthew Vickers, Luke J. Harmon, Lin Schwarzkopf

Biology

Ecomorphology links microhabitat and morphology. By comparing ecomorphological associations across clades, we can investigate the extent to which evolution can produce similar solutions in response to similar challenges. While Anolis lizards represent a well-studied example of repeated convergent evolution, very few studies have investigated the ecomorphology of geckos. Similar to anoles, gekkonid lizards have independently evolved adhesive toe pads and many species are scansorial. We quantified gecko and anole limb length and microhabitat use, finding that geckos tend to have shorter limbs than anoles. Combining these measurements with microhabitat observations of geckos in Queensland, Australia, we observed geckos using similar …

Cardiac-Specific Inactivation Of Lpp3 In Mice Leads To Myocardial Dysfunction And Heart Failure, Mini Chandra, Diana Escalante-Alcalde, Shenuarin Bhuiyan, Anthony Wayne Orr, Christopher Kevil, Andrew J. Morris, Hyung Nam, Paari Dominic, Kevin J. Mccarthy, Sumitra Miriyala, Manikandan Panchatcharam

Internal Medicine Faculty Publications

Lipid Phosphate phosphatase 3 (LPP3), encoded by the Plpp3 gene, is an enzyme that dephosphorylates the bioactive lipid mediator lysophosphatidic acid (LPA). To study the role of LPP3 in the myocardium, we generated a cardiac specific Plpp3 deficient mouse strain. Although these mice were viable at birth in contrast to global Plpp3 knockout mice, they showed increased mortality ~ 8 months. LPP3 deficient mice had enlarged hearts with reduced left ventricular performance as seen by echocardiography. Cardiac specific Plpp3 deficient mice had longer ventricular effective refractory periods compared to their Plpp3 littermates. We observed that lack of Lpp3 enhanced cardiomyocyte …

Drosophila Studies Support A Role For A Presynaptic Synaptotagmin Mutation In A Human Congenital Myasthenic Syndrome, Mallory C. Shields, Matthew R. Bowers, Mckenzie M. Fulcer, Madelyn K. Bollig, Patrick J. Rock, Bryan R. Sutton, Alysia D. Vrailas-Mortimer, Hanns Lochmüller, Roger G. Whittaker, Rita Horvath, Noreen E. Reist

Biological Sciences: Faculty Scholarship

During chemical transmission, the function of synaptic proteins must be coordinated to efficiently release neurotransmitter. Synaptotagmin 2, the Ca2+ sensor for fast, synchronized neurotransmitter release at the human neuromuscular junction, has recently been implicated in a dominantly inherited congenital myasthenic syndrome associated with a non-progressive motor neuropathy. In one family, a proline residue within the C2B Ca2+-binding pocket of synaptotagmin is replaced by a leucine. The functional significance of this residue has not been investigated previously. Here we show that in silico modeling predicts disruption of the C2B Ca2+-binding pocket, and we examine the in vivo effects of the homologous …