Biology Commons^™

Octopamine In Sexual Behavior, Ana Isabel Fernandez

Open Access Theses & Dissertations

Octopamine is a biogenic amine neuromodulator present in neuronal and non-neuronal tissues in invertebrates (Roeder, 1999). It modulates numerous physiological processes such as motivation, pheromone response, olfaction, ovulation, learning and memory. Octopamine together with its precursor tyramine have roles restricted only to invertebrates (Roeder, 1999). It is believed that octopamine is the invertebrate homolog of norepinephrine, a catecholamine present in mammals that acts as a neuromodulator in the sympathetic and central nervous systems. Both octopamine and norepinephrine are derived from the same amino acid tyrosine and are monoamine neurotransmitters. The main objective of this study is to understand the role …

Identification And Characterization Of Tumor-Associated Antigens (Taas) And Anti-Taas Autoantibodies As Biomarkers In Immunodiagnosis Of Human Osteosarcoma By Serological Proteome Analysis (Serpa), Jitian Li

Open Access Theses & Dissertations

Osteosarcoma (OS) is the most common highly malignant primary solid bone-tumor. Despite its relatively low incidence rate among overall cancers, it remains one of the most harmful primary malignant tumors in childhood and adolescence. Although some tumor markers like mutant p53 can be potentially used as biomarker to detect OS, its extensive association with the clinical outcome is poorly understood. The establishment of a methodology to identify patient with early stage of OS remains to be investigated. It is now evident that serum autoantibodies against tumor-associated antigens (TAAs) could be used as serological cancer biomarkers in types of cancers, which …

Predatory Behavior And Neuroanatomy Of The Sessile Rotifer, Cupelopagis Vorax , Elizabeth Preza

Open Access Theses & Dissertations

Predator-prey interactions contribute to the evolution of behavioral and morphological characteristics of species. However, research on zooplankton has mainly focused on planktonic species such Mesocyclops edax (Arthropoda, Cyclopoida) and Asplanchna spp. (Rotifera, Ploima). Cupelopagis vorax (Rotifera, Collothecaceae) provides a unique model for studying the predatory behavior of a sessile species. Cupelopagis was chosen because it is the only rotifer known to exhibit rheotaxic behaviors in the presence of prey and because it undergoes indirect development where non-feeding, free-swimming larvae mature into feeding adults. The integration of behavioral techniques, immunohistochemistry, and confocal microscopy were used to provide insight as to how …

Complementary Charged Molecular Imprints Of West Nile Virus Antibodies, Julio Rincon

Open Access Theses & Dissertations

There is a significant demand for robust and stable receptor molecules that can mimic biological molecules, such as antibodies. Relying only on natural recognition molecules have greatly limited the uses and capabilities of many aspects of health sciences due to product expense and stability. This is especially important in medically underserved areas where the lack of resources and faulty or limited cold-chain makes antibody based diagnostics very difficult to implement.

With molecular imprinting, it is possible to recognize diseases with the added advantage of product stability, long term use, fast preparation and ease of scalability, all while being cost effective. …

Grasshopper (Orthoptera: Caelifera) And Plant Community Relationships On Indio Mountains Research Station, Hudspeth County, Texas, Sara Ebrahim Baqla

Open Access Theses & Dissertations

An ecogeographic analysis of a grasshopper survey was conducted at eight sites on Indio Mountains Research Station (IMRS) in the Chihuahuan Desert during September 2014 through December 2015. Five sites contained ephemeral water sources (earthen tanks), one had perennial water (spring system), and two were open desert. A total of 23 grasshopper species were identified, and six of those were new records for the property. The most species rich site was Echo Tank, with 14 grasshopper species. A UPGMA dendrogram showed Red Tank and Rattlesnake Tank, both wetland sites, to be the most similar (CBR = .84). A poisson model …

Characterizing Regulatory Factors Of The Sumoylation System, David Quintanar

Open Access Theses & Dissertations

The effects that influenzaâ??s seasonal epidemics have on human health and the global economy have been clearly noted; while they are indeed very impressive, the impact of influenza pandemics arguably surpass other known infectious agents. Influenza A virus attaches to, enters, and infect cells by releasing its segmented genome which localize to the nucleus then use the hostâ??s cellular machinery to replicate and create viral progeny. The virus is able to hijack transcriptional components as well as to interact with other known and unknown host proteins which ultimately allows for a balance between cell viability and viral propagation. One known …

The Neuromodulatory Mechanisms That Monoamines Control Simple And Complex Behaviors, Paul Rafael Bermeo Sabandal

Open Access Theses & Dissertations

For my Dissertation, I worked on three projects in the fruit fly Drosophila melanogaster, which is a well-established genetic animal model. The first project (Chapter 1) is to elucidate the neural, cellular and molecular mechanisms underlying behavioral control named response inhibition. In this study, I identified that a particular subset of dopamine neurons, D1 dopamine receptors and the neural substrates crucial for response inhibition. Abnormal response inhibition is associated with the mental disorders including attention deficit hyperactivity disorder (ADHD), autism, schizophrenia, obsessive compulsive disorder, posttraumatic stress disorder and addiction, This study may help enhance our understanding the pathogenesis mechanisms of …

The Contribution Of Alternative Splicing Toward The Global Control Of Sumo1 Sumoylation, Myriah Lorraine Acuna

Open Access Theses & Dissertations

SUMOylation, the attachment of the Small Ubiquitin-like Modifier (SUMO) to a target protein, is a post-translational modification similar to that of Ubiquitination in terms of the cascade of events required to produce the final modified target. However, instead of targeting proteins for degradation, as Ubiquitination usually does, SUMOylation appears to regulate many vital cellular processes including nucleocytoplasmic transport, transcription, apoptosis, protein stability, response to stress, and progression through the cell cycle (Hay, R.T, 2005). This versatility exhibited by the SUMOylation system makes it an optimal target for viral manipulation, as our laboratory has previously described for Influenza A virus (Pal, …

Dynamic Acquisition And Loss Of Dual-Obligate Symbionts In The Plant-Sap-Feeding Adelgidae (Hemiptera: Sternorrhyncha: Aphidoidea), Carol D. Von Dohlen, Usha Spaulding, Kistie B. Patch, Ethan P. White, Robert G. Foottit, Nathan P. Havill, Gaelen R. Burke

Biology Faculty Publications

Sap-sucking insects typically engage in obligate relationships with symbiotic bacteria that play nutritional roles in synthesizing nutrients unavailable or in scarce supply from the plant-sap diets of their hosts. Adelgids are sap-sucking insects with complex life cycles that involve alternation between conifer tree species. While all adelgid species feed on spruce during the sexual phase of their life cycle, each adelgid species belongs to a major lineage that feeds on a distinct genus of conifers as their alternate host. Previous work on adelgid symbionts had discovered pairs of symbionts within each host species, and unusual diversity across the insect family, …

The Role Of Notch-1-Mediated Repression Of Pten On Growth And Cancer Stem Cell Survival In Trastuzumab Resistant, Her2+ Breast Cancer, Andrew Thomas Baker

Dissertations

Trastuzumab targets the ErbB2 (HER2) receptor on breast cancer cells to attenuate HER2 driven tumor formation. Trastuzumab reduces both downstream PI3K/Akt and MAPK pathway signaling as well as the breast cancer stem cell (BCSC) population. BCSCs are hypothesized to be responsible for tumor recurrence, metastasis, as well as drug resistance. Today, resistance to trastuzumab remains a major clinical problem for women diagnosed with HER2+ breast cancer. Attenuation of PI3K/Akt and MAPK pathways may occur through the tumor suppressor, PTEN. Women with HER2+ breast tumors expressing less PTEN and increased PI3K/Akt or MAPK activity have worse overall outcome. Previously we have …

A Review Of Neogene And Quaternary Pikes Of Southeastern Europe And A New Species From The Early Pleistocene Of Nogaisk, Ukraine, Terry C. Grande, Oleksandr M. Kovalchuk, Mark V. H. Wilson

Biology: Faculty Publications and Other Works

The fish genus Esox (Teleostei, Esocidae) has been recorded from thirty late Miocene, Pliocene, and Pleistocene localities where forty-one bone-bearing strata are exposed in the territory of Ukraine, Russian Federation, and Republic of Moldova. From eight localities the genus is reported or described for the first time. A detailed description and morphological analysis of the currently available osteological material demonstrates the presence of four species in the studied area: (i) Esox sibiricus (late Miocene–early Pliocene); (ii) Esox moldavicus (early Pliocene–early Pleistocene); (iii) Esox nogaicus sp. nov. (early Pleistocene, Calabrian); (iv) Esox lucius (early–middle Pleistocene). The Northern Pike (Esox lucius …

Sensitizing Leukemia Stem Cells To Nf-Κb Inhibitor Treatment In Vivo By Inactivation Of Both Tnf And Il-1 Signaling, Peter W. Breslin, Jing Li, Andrew Volk, Jun Zhang, Joseph Cannova, Shaojun Dai, Caiqin Hao, Chenglong Hu, Jiewen Sun, Yan Xu, Wei Wei, Sucha Nand, Jianjun Chen, Ameet Kini, Jiang Zhu, Jiwang Zhang

Biology: Faculty Publications and Other Works

We previously reported that autocrine TNF-α (TNF) is responsible for JNK pathway activation in a subset of acute myeloid leukemia (AML) patient samples, providing a survival/proliferation signaling parallel to NF-κB in AML stem cells (LSCs). In this study, we report that most TNF-expressing AML cells (LCs) also express another pro-inflammatory cytokine, IL1β, which acts in a parallel manner. TNF was produced primarily by LSCs and leukemic progenitors (LPs), whereas IL1β was mainly produced by partially differentiated leukemic blasts (LBs). IL1β also stimulates an NF-κB-independent pro-survival and proliferation signal through activation of the JNK pathway. We determined that co-inhibition of signaling …

Deformation But Not Migration And Rotation – A Model Study On Vesicle Biomechanics In A Uniform Dc Electric Field, Hui Ye, Austen Curcuru

Biology: Faculty Publications and Other Works

Background: Biological cells migrate, deform and rotate in various types of electric fields, which have significant impact on the normal cellular physiology. To investigate electrically-induced deformation, researchers have used artificial giant vesicles that mimic the phospholipid bilayer cell membrane. Containing primarily the neutral molecule phosphatidylcholine, these vesicles deformed under evenly distributed, strong direct current (DC) electric fields. Interestingly, they did not migrate or rotate. A biophysical mechanism underlying the kinematic differences between the biological cells and the vesicles under electric stimulation has not been worked out.

Methods: We modeled the vesicle as a leaky, dielectric sphere and computed …

Vector Competence Of Aedes Sierrensis And Culex Pipiens Complex (Diptera: Culicidae) For Dirofilaria Immitis (Spirurida: Onchocercidae) In Northern California, Jeffrey Allan Kurosaka

University of the Pacific Theses and Dissertations

Dirofilaria immitis Leidy (dog heartworm) is a life-threatening parasite transmitted by mosquitoes to domestic dogs. Endemic in the eastern United States, cases have become more prevalent over the last few decades. While prevalence in California is generally low, Lake and San Joaquin Counties have reported rates comparable to the East Coast at 3.73% and 0.71%(CAPC 2017), respectively. Aedes sierrensis is thought to be responsible for transmission in California, but in some cases, it exists in inadequate quantities and temporal ranges to explain parasite activity. Based on Huang et al. (2013) and Tran (2016), bloodfeeding patterns, and other vector criteria, Culex …

The Effects Of Treating Multispecies Biofilms With Bacteriophage, Alexandria Francis Cooper

Master's Theses

Biofilms can be found in any environment within proximity to water and are problematic in an assortment of industries. Numerous efforts have been employed to dislodge biofilms including bacteriophages (viruses that infect bacteria). Phage remediation is a promising solution for combatting biofilms that form on catheters in long term use patients. These biofilms often result in catheter-associated urinary tract infections (CAUTIs) and are the most common type of healthcare related infection reported. Additionally, they result in longer hospital stays and increased morbidity. To date, most of the research on the topic focuses on single species biofilms, despite their rarity in …

The Function Of Drosophila Larval Class Iv Dendritic Arborization Sensory Neurons In The Larval-Pupal Transition Is Separable From Their Function In Mechanical Nociception Responses, Hannah E. Brown, Trishna Desai, Allison J. Murphy, Harshida Pancholi, Eric C. Liebl

Faculty Publications

No abstract provided.

Isolation And Characterization Of Triclocarban Degrading Bacteria As Plant Growth Promoter, Merry Krisdawati Sipahutar

Chulalongkorn University Theses and Dissertations (Chula ETD)

Triclocarban (TCC) is a widely used as antimicrobial agent in household products. High usage volume of TCC results in its accumulation in sludge and lead to contamination in environments. Application of biosolid in agricultural activities leads to contamination of TCC in agricultural areas. So. development of bioremediation technique for TCC is necessary to maintain quality of agricultural ecosystem. For that purpose, this research isolated 5 soil bacteria capable of TCC degradation and with plant-growth promoting (PGP) activities including Ochrobactrum sp. MC22, Ochrobactrum sp. MC35, Sphingobacterium sp. MC43, Pseudomonas sp. MS45, and Pseudomonas fluorescens MC46. Among them, Ochrobactrum sp. MC22 and …

Amphibians And Reptiles Of The State Of Chihuahua, Mexico, With Comparisons With Adjoining States, J. A. Lemos-Espinal, Geoffrey R. Smith, G. A. Woolrich-Pina, A. Cruz

Faculty Publications

No abstract provided.

Effects Of Hydraulic Dredging And Vessel Operation On Atlantic Sturgeon Behavior In A Large Coastal River, Michael R. Barber

Theses and Dissertations

The tidal James River, a focus of VCU's Atlantic Sturgeon program, supports both commercial shipping and hydraulic dredging. These anthropogenic threats present documented but preventable sources of mortality to the endangered species. Using three separate VEMCO Positioning System (VPS) receiver arrays, spatial data of previously-tagged fish were collected. ArcGIS and Programita software were used to analyze fish spatial distributions in the presence and absence of potential threats, using additional data including automatic identification system (AIS) vessel locations, vessel passages compiled using camera footage, and dredge records provided by the US Army Corps of Engineers. The data showed a change in …

Baseline Characterization Of Nearshore Rocky Reef Fishes Found In Northern California Marine Protected Areas, Jay M. Staton

Cal Poly Humboldt theses and projects

The nearshore rocky reef habitat along California’s North Coast supports a diverse assemblage of ecologically, economically, and culturally important fishes. In December 2012, a network of Marine Protected Areas (MPAs) was established in Northern California with the goal of protecting these species. Our study utilized collaborative hook and line fishing methods, while employing local charter fishing vessels, to establish a baseline of rocky reef fishes associated with four MPAs and four unprotected reference sites. These baseline data were then used to inform generalized additive models (GAMs) to explore potential drivers of relative abundance, size, and diversity of fishes. Understanding what …

Seasonal Comparison Of Environmental Dna And Traditional Sampling Techniques For Detecting Coastal Tailed Frogs (Ascaphus Truei) In Northern California, Lauren Smith

Cal Poly Humboldt theses and projects

While environmental DNA (eDNA) sampling has been shown to provide higher detection rates for aquatic amphibians compared to traditional sampling, the effect of season and stream characteristics on the efficacy of eDNA sampling remains unclear. The pH, turbidity, water temperature, and flow rate of streams may affect eDNA concentrations, and consequently influence detection rate. The purpose of this research was to (1) compare the detection rates of eDNA and traditional sampling techniques during different seasons, (2) observe the effects of stream characteristics on eDNA concentrations, and (3) review the relationship between animal abundance and eDNA concentrations at specific sampling sites. …

Modeling The Spread Of Sudden Oak Death Across A Heterogeneous Landscape In Redwood National Park Using A Spatially-Explicit Epidemiological Model, Laura A. Morgan

Cal Poly Humboldt theses and projects

The pathogen Phytophthora ramorum, the causal agent of Sudden Oak Death (SOD), is responsible for the deaths of millions of oak (Quercus spp.) and tanoak (Notholithocarpus densiflorus) trees in California and Oregon (USA). A recent infection in Redwood National Park (RNP) in California (USA) provided an opportunity to adapt an existing SOD model to assess the efficacy of current and proposed management strategies. A common method of SOD treatment includes killing both infected and uninfected hosts in the area of infection, as well as the area surrounding the infection to create buffers to account for undetected …

Habitat Useage Of Tri-Colored Bats (Perimyotis Subflavus) In Western Kentucky And Tennessee Post-White Nose Syndrome, Katherine Schaefer

Murray State Theses and Dissertations

The tri-colored bat (Perimyotis subflavus) has declined severely across its range since 2006 due to white nose syndrome, a fungal disease causing massive bat mortality in North America. My objective was to determine distinguishing characteristics of roost trees and habitat used by tri-colored bats so that the species’ needs can be considered in management plans. I mist-netted for tri-colored bats in western Kentucky and Tennessee during the summers of 2015 and 2016, and attached a radio transmitter to each captured adult bat. I tracked 15 bats to their day roosts and collected habitat data at 38 roost areas …

Habitat Usage Of Tri-Colored Bats (Perimyotis Subflavus) In Western Kentucky And Tennessee Post-White Nose Syndrome, Katherine Schaefer

Murray State Theses and Dissertations

The tri-colored bat (Perimyotis subflavus) has declined severely across its range since 2006 due to white nose syndrome, a fungal disease causing massive bat mortality in North America. My objective was to determine distinguishing characteristics of roost trees and habitat used by tri-colored bats so that the species’ needs can be considered in management plans. I mist-netted for tri-colored bats in western Kentucky and Tennessee during the summers of 2015 and 2016, and attached a radio transmitter to each captured adult bat. I tracked 15 bats to their day roosts and collected habitat data at 38 roost areas …

A Presence-Only Species Distribution Model Comparison Predicting The Distribution Of The Amphibian Chytrid Fungus (Batrachochytrium Dendrobatidis), Melanie L. Torres

Murray State Theses and Dissertations

Global anthropogenic impacts have incited devastating effects on both human and wildlife populations. Emerging infectious diseases (EID) are one consequence of these impacts. One particular EID, chytridiomycosis, is a threat to global amphibian populations, causing massive die-offs and several species extinctions. While predictive modeling has helped the general understanding of where the aquatic pathogen causing chytridiomycosis, Batrachochytrium dendrobatidis (Bd), could spread to, most models are on continental or countrywide scales. This coarse-scale modeling makes local management and conservation planning for imperiled amphibians difficult. In addition, modeling efforts can vary depending on location and species, making it necessary to test the …

Implementation Of A Flipped Classroom In A Non-Majors’ Biology Course, Leah Good

Murray State Theses and Dissertations

Changes to teaching practices have been requested in almost every field of science and mathematics but their implementation can be daunting. The flipped classroom has become a popular method in K-16 education for integrating active learning in the classroom. Research on the implementation of flipped classrooms has been met with mixed results, however. I sought to determine the effectiveness of the flipped classroom while addressing methodology needs cited by past studies including: using both faculty and student demographic variables, addressing assessment performance using concept inventories, and studying faculty who are not experts in education. I found that flipped and non-flipped …

Phytoplankton Plastid Proteomics: Cracking Open Diatoms To Understand Plastid Biochemistry Under Iron Limitation, Skyler J. Nunn, Phoebe Dreux Chappell, Kristofer Gomes, Anasthasia Bonderenko, Bethany D. Jenkins, Brook L. Nunn

OES Faculty Publications

Diatoms, such as Thalassiosira pseudonana, are important oceanic primary producers, as they sequester carbon dioxide (CO₂) out of the atmosphere, die, and precipitate to the ocean floor. In many areas of the world’s oceans, phytoplankton, such as diatoms, are limited in growth by the availability of iron (Fe). Fe is an essential nutrient for phytoplankton, as it is central in the electron transport chain component of photosynthesis. Through this study, we examined if Fe-limitation makes a significant difference in the proteins expressed within the chloroplast, the power source for diatoms. Here, we utilized a new plastid isolation technique specific …

Expanding Our Understanding Of The Trade In Marine Aquarium Animals, Andrew L. Rhyne, Michael F. Tlusty, Joseph T. Szczebak, Robert J. Holmberg

Arts & Sciences Faculty Publications

The trade of live marine animals for home and public aquaria has grown into a major global industry. Millions of marine fishes and invertebrates are removed from coral reefs and associated habitats each year. The majority are imported into the United States, with the remainder sent to Europe, Japan, and a handful of other countries. Despite the recent growth and diversification of the aquarium trade, to date, data collection is not mandatory, and hence comprehensive information on species volume and diversity is lacking. This lack of information makes it impossible to study trade pathways. Without species-specific volume and diversity data, …

The Central Arctic Ocean-Preventing Another Tragedy Of The Commons, Andrew J. Norris, Patrick Mckinley

Arts & Sciences Faculty Publications

Arctic sea ice is melting, slowly but inexorably. As the ice disappears, mankind will be afforded access to regions and activities, including commercial fishing, that have been inaccessible for our entire recorded history. There is currently no regulatory body or mechanism in the high seas Arctic (also referred to as the central Arctic Ocean) to conserve and manage fish stocks, the distribution and concentration of which are poorly understood, and that might be the target of commercial fisheries. This article examines the extent and nature of ice recession in the Arctic, and its likely effect on the accessibility of central …

Season, But Not Symbiont State, Drives Microbiome Structure In The Temperate Coral Astrangia Poculata., Koty H. Sharp, Zoe A. Pratte, Allison H. Kerwin

Arts & Sciences Faculty Publications

BACKGROUND: Understanding the associations among corals, their photosynthetic zooxanthella symbionts (Symbiodinium), and coral-associated prokaryotic microbiomes is critical for predicting the fidelity and strength of coral symbioses in the face of growing environmental threats. Most coral-microbiome associations are beneficial, yet the mechanisms that determine the composition of the coral microbiome remain largely unknown. Here, we characterized microbiome diversity in the temperate, facultatively symbiotic coral Astrangia poculata at four seasonal time points near the northernmost limit of the species range. The facultative nature of this system allowed us to test seasonal influence and symbiotic state (Symbiodinium density in the coral) on microbiome …