Biology Commons^™

Land Use, Stream Stability, And Benthic Invertebrates In A Dry Forest Watershed Of Western Costa Rica, Jacqueline Ann Demko

USF Tampa Graduate Theses and Dissertations

There is a paucity of data on dry forests, the most threatened biome in the tropics. The Nandamojo is a tropical dry forest watershed in Western Costa Rica that has been impacted by varying degrees of human induced modifications. This research was conducted to examine the influence of land use and channel characteristics on invertebrate communities within a sub basin of the Nandamojo watershed. This study addressed three hypotheses: (1) sites with low tree cover and small riparian buffer zones will have high erosion, (2) macroinvertebrate abundance will be lower at sites with low channel stability values, and (3) benthic …

Data-Driven Identification Of Potential Zika Virus Vectors, Michelle V. Evans, Tad Dallas, Barbara A. Han, Courtney C. Murdock, John M. Drake

Faculty Publications

Zika is an emerging virus whose rapid spread is of great public health concern. Knowledge about transmission remains incomplete, especially concerning potential transmission in geographic areas in which it has not yet been introduced. To identify unknown vectors of Zika, we developed a data-driven model linking vector species and the Zika virus via vector-virus trait combinations that confer a propensity toward associations in an ecological network connecting flaviviruses and their mosquito vectors. Our model predicts that thirty-five species may be able to transmit the virus, seven of which are found in the continental United States, including Culex quinquefasciatus and Cx. …

Age And Size At First Reproduction In The Channeled Whelk Population Of The Great South Bay, Long Island, New York., Robin Lynn

Discovery Day (formerly Post & Beyond)

The channeled whelk, Busycotypus canaliculatus, is a commercially valuable gastropod found on the east coast of the United States. In New York, the channeled whelk fishery is largely unregulated, due to a lack of knowledge regarding the life history of the species. This study focuses on determining the age and size at first reproduction of the channeled whelk population in the Great South Bay, on the southern shore of Long Island. Whelks were obtained from a commercial fisherman and individually dissected to determine maturity; correlations to shell length and shell width were then examined. The operculum of each individual dissected …

Wfs1 Is Expressed In Dopaminoceptive Regions Of The Amniote Brain And Modulates Levels Of D1-Like Receptors, T. Tekko, T. Lakspere, A. Allikalt, J. End, K. R. Kõlvart, T. Jagomäe, A. Terasmaa, M.-A. Philips, T. Visnapuu, F. Väärtnõu, Scott F. Gilbert, A. Rinken, E. Vasar, K. Lilleväli

Biology Faculty Works

During amniote evolution, the construction of the forebrain has diverged across different lineages, and accompanying the structural changes, functional diversification of the homologous brain regions has occurred. This can be assessed by studying the expression patterns of marker genes that are relevant in particular functional circuits. In all vertebrates, the dopaminergic system is responsible for the behavioral responses to environmental stimuli. Here we show that the brain regions that receive dopaminergic input through dopamine receptor D1 are relatively conserved, but with some important variations between three evolutionarily distant vertebrate lines–house mouse (Mus musculus), domestic chick (Gallus gallus domesticus) / common …

The Combined Effects Of Reactant Kinetics And Enzyme Stability Explain The Temperature Dependence Of Metabolic Rates, John Delong, J. P. Gibert, Thomas M. Luhring, Gwendolyn C. Bachman, B. Reed, A. Neyer, Kristi Montooth

School of Biological Sciences: Faculty Publications

A mechanistic understanding of the response of metabolic rate to temperature is essential for understanding thermal ecology and metabolic adaptation. Although the Arrhenius equation has been used to describe the effects of temperature on reaction rates and metabolic traits, it does not adequately describe two aspects of the thermal performance curve (TPC) for metabolic rate—that metabolic rate is a unimodal function of temperature often with maximal values in the biologically relevant temperature range and that activation energies are temperature dependent. We show that the temperature dependence of metabolic rate in ectotherms is well described by an enzyme-assisted Arrhenius (EAAR) model …

De Novo [Psi+] Prion Formation Involves Multiple Pathways To Form Infectious Oligomers, Jaya Sharma, Grett T. Wisniewski, Emily Paulson, Joanna O. Obaoye, Stephen J. Merrill, Anita L. Manogaran

Biological Sciences Faculty Research and Publications

Prion and other neurodegenerative diseases are associated with misfolded protein assemblies called amyloid. Research has begun to uncover common mechanisms underlying transmission of amyloids, yet how amyloids form in vivo is still unclear. Here, we take advantage of the yeast prion, [PSI ⁺], to uncover the early steps of amyloid formation in vivo. [PSI ⁺] is the prion form of the Sup35 protein. While [PSI ⁺] formation is quite rare, the prion can be greatly induced by overexpression of the prion domain of the Sup35 protein. This de novo induction of [PSI …

Natural History And Diet Of A Population Of Prairie Rattlesnakes (Crotalus Viridis) In Kansas, Colleen Rothe-Groleau

UNO Student Research and Creative Activity Fair

The primary goal of this study was to gather enough data to create a life history table for this population that can be used in future studies on this and similar species, such as timber rattlesnakes. A second goal was to compile diet data for comparison to datasets within the primary literature from populations of C. viridis and other crotalid species throughout the United States and Canada.

Using morphological characteristics, I attempted to determine whether there are methods that are less invasive for determining sex of C. viridis in the field than those currently in use. Snout-vent length (SVL) and …

Landscape Effects On Brown-Headed Cowbird (Molothrus Ater) Abundances In Crp Patches, Chase Wickard

UNO Student Research and Creative Activity Fair

Many grassland bird species have experienced significant population declines and are the focus of conservation efforts. Recovery of these species is slowed, in part, due to nest parasitism by the Brown-headed Cowbird (Molothrus ater). Cowbirds are nest parasites that lay their eggs in the nests of other bird species and rely on the host species parents to raise their offspring. This in turn can reduce the reproductive success of hosts. This study attempts to determine whether landscape variables surrounding CRP patches may be driving cowbird densities.

Differences In Behavioral Responses To Stress In Zebrafish: Exploring Underlying Neural Mechanisms, Jacalyn B. Russ

UNO Student Research and Creative Activity Fair

Two alternative “stress coping styles” are documented across a wide range of taxa: proactive and reactive. While behavior differences can be observed between coping styles, brain regions potentially mediating these differences have not been studied extensively. Understanding differences in how the brain processes information between the coping styles can lead to insights on how these responses might be controlled. To assess the neural mechanisms underlying alternative stress coping styles, I utilized Danio rerio (zebrafish) and the Novel Tank Diving Test (NTDT). I hypothesize (i) that proactive fish will spend less time in the lower portion of the NTDT and spend …

Microflora In The Cheek Pouches Of Ord's Kangaroo Rat (Dipodomys Ordii) From The Nebraska Sandhills, Devin M. Christensen

UNO Student Research and Creative Activity Fair

The microflora living within the Ord’s kangaroo rat (Dipodymis ordii) cheek pouches has never been extensively studied before. Kangaroo rats use their cheek pouches to transport seeds and grasses in their mouths that they later store. It is predicted that the cheek pouches harbor fungal and bacterial growth that could be either helpful or harmful to the kangaroo rat and its environment. 8 kangaroo rats were humanely captured using Sherman live traps in the Nebraska Sandhills; their cheek pouches were swabbed, and the microorganisms obtained were grown on agar plates and in liquid media until an adequate amount …

Functional Genetics Of Mind-Meld In Drosophila Melanogaster, Candi R. Senior-Remsa

UNO Student Research and Creative Activity Fair

Immunohistochemistry (IHC) is a useful research tool used to localize specific antigens in tissue sections with labeled antibodies based on antigen-antibody interactions. To obtain a clearer understanding of the cellular and subcellular localization of the Mind-Meld (MMD) protein during the developing Drosophila melanogaster embryo double indirect immunofluorescence was used to colocalize MMD with other proteins found in the fruit fly. An affinity-purified antibody raised in rabbit identifying all MMD isoforms was used with the fluorophore-labeled secondary antibody Alexa Fluor 594 specific to rabbit IgG. Well-characterized murine monoclonal antibodies with known subcellular localization and function in Drosophila: Fascicilin II (FASII), Short …

Taxonomic Placement Of The Nidulariaceae Of Nebraska And Iowa Based On Molecular And Morphological Data, Goodmond H. Danielsen Iv

UNO Student Research and Creative Activity Fair

Proper taxonomic and molecular study is necessary to better organize closely related species that may not only be used for human needs, but also in the quest for knowledge of how the world around us works. Though important, the taxonomic placement of Nebraskan and Iowan bird’s nest fungi (Nidulariaceae) is not well documented. Here, phylogenetic analysis is used to place the Nidulariaceae of Nebraska and Iowa in the tree of life using molecular and morphological techniques. Based on these results and results of further work done on these specimens, it will be possible to better place the Nidulariaceae of Nebraska …

Species Diversity And Relative Abundance Of Reptiles And Amphibians At Glacier Creek Preserve, Cori L. Borgheiinck

UNO Student Research and Creative Activity Fair

Glacier Creek Preserve, located in Bennington, Nebraska, is dedicated to restoring land to native prairie. Restoration at Glacier Creek Preserve began in 1970. Over the years, the preserve has acquired more land, as well as acquiring more habitat diversity. This research is the first to look at the community dynamics of herpetofauna in the preserve. The sampling areas were determined by choosing seven random sites to represent the following habitats, (1) prairie, (2) non-prairie, (3) prairie burned in 2014, and (4) prairie burned in 2016.

Data sampling occurred from April 2016 to October 2016 and from February 2017 to March …

Seroprevalence Of Babesia Microti In Patients With Lyme Disease, Sabino Curcio

Discovery Day (formerly Post & Beyond)

Babesiosis is a tickborne disease caused by Babesia microti, an intracellular parasite of red blood cells. Presently, B. microti is the most common and deadly pathogen transmitted by blood transfusion. B. microti infects humans via Ixodes scapularis ticks, the same vector carrying Borrelia burgdorferi, the causative agent of Lyme disease. Co-infection with these two diseases increases the severity of symptoms, posing a major therapeutic challenge. We aimed to determine the co-infection rate of B. microti in individuals who tested positive for Lyme disease. Sera obtained from 154 individuals in New York State were collected and tested by immunofluorescence assay. Of …

Session B-1: Current Events In Biology, Crystal Randall, Don Dosch, Sarah O'Leary-Driscoll

Professional Learning Day

Teaching fundamentals, while important, can sometimes take a toll on our motivation and enthusiasm for our subject because there are rarely significant changes in the content we might present from year to year. However, keeping up with the current progress of our field, what’s new and exciting in research, and how current advancements can impact our health, well-being, and society in the future can keep us inspired, and help us continue to inspire our students. Come discuss what’s happening in biology news today, hear what we’re excited about and bring your own ideas to share!

Session C-1: Modeling Stem Activities Into Classroom Practice, Sowmya Anjur

Professional Learning Day

Students understand concepts better when they have had a chance to work hands on with relevant material. Examples will be presented from my classroom where difficult concepts have been modeled into simple experiments with considerable success in enhancing student understanding. Special focus will be given to selected topics that students seem to have the most difficulty grasping. The objective is to enable students to transfer their understanding to solve complex problems with considerable ease and apply their understanding to real world scenarios on assessments. Suggestions will also be provided for implementation of various concepts into the high school classroom.

Small Scale Heterogeneity In Vegetation Structure In A Patch-Burn-Grazing Landscape, Eric G. Behrens

UNO Student Research and Creative Activity Fair

Disturbances are drivers of spatial change in the plant communities of the tallgrass prairie ecosystem. Fire and large herbivore grazing are prevalent disturbances that maintain the vegetation structure and create spatial heterogeneity in vegetation at various scales. The fire-grazing disturbance interaction occurs when areas that have been recently burned are followed by intense grazing due to the high quality of forage regrowth. This interaction has been managed in tallgrass prairies in a homogenous method using uniform burning and grazing and a heterogeneous method using patch-burn-grazing (PBG). Vegetation heterogeneity at a large scale has been studied in PBG and uniformly managed …

Establishment Of Milkweed Seeds Under Different Conditions, Marvin E. Sibrian

UNO Student Research and Creative Activity Fair

Milkweed is an important food source for many insects and the only food source for monarch caterpillars. Unfortunately, the abundance of milkweed plants has been decreasing over the years due to Roundup Ready® crops and increased herbicide use in agriculture, as well as milkweed habitats being plowed under for increased corn acreage. In hopes of restoring the monarch population, conservation organizations are joining forces to grow as much milkweed as they can and to increase the number of North American milkweed individuals by one billion. However, it is unclear how many seeds must be sown to add one billion milkweed …

Application Of Gis To Prioritize Brownfield Sites For Green Building Construction Based On Leed Criteria, Can B. Aktas, Paul Bartholomew, Sabrina Church

Civil Engineering Faculty Publications

Although there are many initiatives to create incentives for investors and developers to invest in and redevelop brownfield sites, efficient prioritization of brownfields by taking into account environmental, economic, and social constraints remains a challenge. This study introduces a method to screen numerous brownfields over large geographic areas by using geographic information systems (GIS) and to assess and prioritize such sites for green building suitability based on leadership in energy and environmental design (LEED) criteria. A case study was completed for the greater Bridgeport, Connecticut region. With 279 brownfield sites, the city has among the highest number of brownfields in …

Competition From Bromus Tectorum Removes Differences Between Perennial Grasses In N Capture And Conservation Strategies, Rebecca E. Drenovsky, Jeffrey T. Walker, J. J. James

Biology

Background and aims

Competition from the annual grass Bromus tectorum threatens aridland perennial bunchgrass communities. Unlike annuals, perennials must allocate part of their first year nitrogen (N) budget to storage rather than growth, potentially placing them at a competitive disadvantage.

Methods

We evaluated N acquisition and conservation for two perennial bunchgrasses, Agropyron desertorum and Pseudoroegneria spicata, at the seedling stage to investigate potential trade-offs between storage and growth when grown with and without B. tectorum under two levels of soil N.

Results

Agropyron desertorum had higher growth rates, N uptake, and N productivity than P. spicata when grown without …

Variable Alkaloid Defenses In The Dendrobatid Poison Frog Oophaga Pumilio Are Perceived As Differences In Palatability To Arthropods, Sarah Bolton, Kelsey Dickerson, Ralph Saporito

2017 Faculty Bibliography

Conspicuously colored dendrobatid frogs sequester alkaloid defenses from dietary arthropods, resulting in considerable alkaloid variation among populations; however, little is known about how variation is perceived as a defense against predators. Previous studies have found variable alkaloids in the dendrobatid Oophaga pumilio to be associated with differences in toxicity to laboratory mice, suggesting variable defenses are important. Arthropods are natural predators that use chemoreception to detect prey, including frogs, and may therefore perceive variation in alkaloid profiles as differences in palatability. The goal of the present study is to determine how arthropods respond to variable alkaloid defenses in O. pumilio. …

Role Of Woody Biochar And Fungal-Bacterial Co-Inoculation On Enzyme Activity And Metal Immobilization In Serpentine Soil, Tharanga Bandara, Indika Herath, Prasanna Kumarathilaka, Mihiri Seneviratne, Gamini Seneviratne, Nishanta Rajakaruna, Meththika Vithanage, Yong Sik Ok

Biological Sciences

Purpose

In this study, we investigated the effect of biochar (BC) and fungal bacterial co-inoculation (FB) on soil enzymatic activity and immobilization of heavy metals in serpentine soil in Sri Lanka.

Materials and methods

A pot experiment was conducted with tomatoes (Lycopersicon esculentum L.) at 1, 2.5, and 5 % (w/w) BC ratios. Polyphenol oxidase, catalase and dehydrogenase activities were determined by idometric, potassium permanganate oxidisable, and spectrophotometric methods, respectively. Heavy metal concentrations were assessed by 0.01 M CaCl₂ and sequential extraction methods.

Results and discussion

An increase in BC application reduced polyphenol oxidase, …

Mutations: Evolution's Disappointment, Georgia (Hickman) Purdom

Alumni Publications

No abstract provided.

Escape Behaviour Of Aposematic (Oophaga Pumilio) And Cryptic (Craugastor Sp.) Frogs In Response To Simulated Predator Approach, Ralph Saporito

2017 Faculty Bibliography

Crypsis and aposematism are common antipredator strategies that can each be coupled with behaviours that maximize predator deterrence or avoidance. Cryptic animals employ camouflage to conceal themselves within their environment and generally rely on immobility to avoid detection by predators. Alternatively, aposematic animals tend to rely on an association between conspicuous colouration and secondary defence to deter potential predators, and tend to exhibit slow movements in response to predators. The goal of the present study was to determine how cryptic Craugastorsp. and aposematic Oophaga pumilio respond to simulated human and bird model predators. Oophaga pumilio responded more often with movement …

Dna Barcoding Of Quercus Falcata, Quercus Palustris, Quercus Rubra, And Their Hybrids Using Rbcl And Matk, Mckinzie Johnson, Timothy Trott

Research in Biology

No abstract provided.

Effects Of Endocrine-Disrupting Chemical Exposure On Zebrafish Ovarian Follicles, Josephine D'Angelo, Edward A. Freeman

Biology Faculty/Staff Publications

The process of oocyte maturation involves both nuclear and cytoplasmic events that are essential for the production of viable eggs and subsequent fertilization in sexually reproducing animals. In zebrafish, oocyte nuclear maturation (meiotic resumption) is marked by a transition from opaque to translucent ovarian follicles. This transition is called clearing and results from germinal vesicle breakdown (GVBD) and the transformation of vitellogenin into yolk proteins. Oocyte maturation can be perturbed by endocrine-disrupting chemicals (EDCs). These EDCs have been broadly shown to interfere with reproductive development. Many herbicides and pesticides used agriculturally act as EDCs. These chemicals can enter aquatic ecosystems …

Estimating Seasonal Variation In Condition Of Yellow Perch, Emily Anne Powers

Biology Graduate Theses

Research has shown that Yellow Perch Perca flavescens, found throughout lakes and streams of North America, are good indicators of environmental health. Due to the correlation between fish condition and ecosystem health it is essential to reliably estimate condition to better manage our fisheries. Therefore, the study objectives were to measure the seasonal changes in adult Yellow Perch percent dry weight (PDW), and compare the reliability of bioelectrical impedance analysis (BIA) and morphometric-based estimates of condition. The seasonal fluctuations in average monthly PDW were measured over a two- year period and were sinusoidal in shape with peaks in August 2015 …

Microbial Strains And Methods Of Making And Using, Nicole Roswitha Buan Murphy, Jennifer Catlett

School of Biological Sciences: Faculty Publications

Microbial strains are provided, as are methods of making and using such microbial strains.

Methane is an increasingly important global energy Source, both as the primary component of natural gas and as a biologically produced fuel. Currently, Sweden uses 100% renewable methane (biogas) in place of compressed natural gas (CNG) for transportation fuel, and several European countries are implementing policies to increase their pro portion of biogas transportation fuel. In addition, methane is a valuable chemical for conversion into other higher-order carbon compounds (e.g., methanol, formate, alkanes, ter penes). More than 50% of the world's methane is produced biologically by …

Blue-Light Induced Accumulation Of Reactive Oxygen Species Is A Consequence Of The Drosophila Cryptochrome Photocycle, Louis David Arthaut, Margaret Ahmad, Nathalie Jourdan, Ali Mteyrek, Maria Procopio, Mohamed A. El-Esawi, Alain D'Harlingue, Pierre Etienne Bouchet, Jacques Witczak, Carlos F. Martino

Biomedical Engineering and Sciences Faculty Publications

Cryptochromes are evolutionarily conserved blue-light absorbing flavoproteins which participate in many important cellular processes including in entrainment of the circadian clock in plants, Drosophila and humans. Drosophila melanogaster cryptochrome (DmCry) absorbs light through a flavin (FAD) cofactor that undergoes photoreduction to the anionic radical (FAD) redox state both in vitro and in vivo. However, recent efforts to link this photoconversion to the initiation of a biological response have remained controversial. Here, we show by kinetic modeling of the DmCry photocycle that the fluence dependence, quantum yield, and half-life of flavin redox state interconversion are consistent with the anionic radical (FAD∗-) …

Iowa Transplant, Mark Myers

UNIversitas: Journal of Research, Scholarship, and Creative Activity

As a professor in the Biology Department at UNI, one of my primary jobs is to teach young Iowans about ecology and the conservation of biodiversity. When I first encounter students in my classes, many view “nature” or “biodiversity” as unfamiliar and distant, perhaps something to be visited or experienced on vacation. I aim to teach these students about the historic transformation of Iowa’s landscape, the ways in which human activities alter the state’s ecosystems, and what ecologists and conservation biologists are doing to promote the conservation and restoration of biodiversity in Iowa. But learning is a two-way street. A …