Biology Commons^™

Evolution Of Alu Element Subfamilies In Papio Baboons, Jon Hunter Strohmeyer

Honors Capstones

No abstract provided.

Is Metabolism Goal-Directed? Investigating The Validity Of Modeling Biological Systems With Cybernetic Control Via Omic Data, Frank T. Devilbiss

Open Access Dissertations

Cybernetic models are uniquely juxtaposed to other metabolic modeling frameworks in that they describe the time-dependent regulation of cellular reactions in terms of dynamic "metabolic goals." This approach contrasts starkly with purely mechanistic descriptions of metabolic regulation which seek to explain metabolic processes in high resolution — a clearly daunting undertaking. Over a span of three decades, cybernetic models have been used to predict metabolic phenomena ranging from resource consumption in mixed-substrate environments to intracellular reaction fluxes of intricate metabolic networks. While the cybernetic approach has been validated in its utility for the prediction of metabolic phenomena, its central feature, …

Influence Of The 3d Microenvironment On Glioblastoma Migration And Drug Response, Ruth Marisol Herrera Perez

Open Access Dissertations

Glioblastoma (GBM) is a highly invasive brain cancer characterized by poor prognosis. Despite significant efforts by the basic and clinical research community our understanding of GBM progression and recurrence has been incremental. Improvements in therapeutic response have been dismal, and GBM continues to be the deadliest tumor of the central nervous system, with patient average survival rate of 12 months. Synergistic relationships that the tumor cells establish with the brain microenvironment have been proven fundamental for successful tumor progression and maintenance. Yet, many in vitro GBM studies are performed in formats that fail to recapitulate the most essential component of …

Drip Irrigation: Saving Plants And Water Alike, Lewis University

Sustainability

No abstract provided.

Implementing Efficient Laminar-Flow Showerheads, Lewis University

Sustainability

No abstract provided.

Analysis Of The Basigin Subset Of The Immunoglobulin Superfamily Throughout The Mouse Lifespan, Tavia N. Hall

UNF Undergraduate Capstone Projects and Honors Theses

The Immunoglobulin Superfamily (IgSF) is a subset of cellular adhesion molecules that are involved in regulation of a variety of cellular processes throughout the body. The purpose of this study was to quantify and compare the expression levels of the Basigin subset of the IgSF in the brain throughout the mouse life-span. This study is the first to compare the expression of Basigin, Embigin, and Neuroplastin, which form the Basigin subset of the IgSF. The expression levels of MCT-1, which is known to associate with Basigin in the neural retina, were also quantified to identify its role in brain tissue. …

The Function Of Second-Order Male Alliances In St. Johns River Dolphins (Tursiops Truncatus), Arien D. Widrick

UNF Undergraduate Capstone Projects and Honors Theses

Bottlenose dolphins (Tursiops truncatus) have a sexually segregated fission-fusion society, in which males and females form different types of social groups for different purposes. Social interactions among dolphins are frequent, and group composition changes just as often. Male-male association patterns reveal the formation of alliances, which range in complexity. Recently, second-order alliance formation was confirmed in the St. Johns River, but the function of these alliances is unknown. To investigate their function, this research analyzes the seasonality of first and second-order alliance formation, and whether female presence plays a role. It was hypothesized that higher level male alliances form in …

Brain Tumor In A Dish: Glioma/Astrocyte Co-Cultures As A Model For In Vitro Studies, Erin Eickman, Christina Wilson, Srivatsan Kidambi

UCARE: Research Products

This study seeks to engineer an in vitro co-culture model to elucidate the role of glioma-astrocyte interactions on molecular changes in the tumor microenvironment. The use of patterned co-cultures created with polyelectrolyte multilayers and micromolding in capillaries will allow tthe investigation of cell-cell communication. This study will lead to better understanding of the role of healthy cells in cancer progression and potential treatment options.

What Are The Genes That Cause Male Sterility In Hybrid Offspring Between Drosophila Mauritiana And Drosophila Simulans?, Naznaz J. Majid, Colin D. Meiklejohn

UCARE: Research Products

The purpose of this research project is to better understand speciation -- the process by which new species arise. To better understand how species form we will investigate how reproductive barriers come about-specifically the sterility of hybrid offspring will be the focus of this research. The species under investigation are Drosophila mauritiana and D. simulans that produce sterile hybrid males. These species are used specifically because they produce fertile hybrid females which allow genes to be moved between them. There are also published genome sequences for both species, which makes it is easier to identify candidate genes. These species are …

Amp Expression In Energetic Hybrid D. Melanogaster Infected With P. Rettgeri, Cassandra K. Treu, Justin Buchanan, Kristi Montooth

UCARE: Research Products

The purpose of this experiment was to investigate immune function and energy metabolism, particularly the levels of antimicrobial peptides produced in Drosophila energetically compromised genotypes. This will provide the ability to investigate energetics of immunity without changing diet. Flies were infected with the bacteria P. rettgeri and the resulting immune response was investigated. Females did not mount as effective an immune response as males. All flies exhibited decreased survivorship from infection. Control flies survived at higher levels and showed no mitochondrial:nuclear interaction.

The Influence Of Spines On Predation And Survivorship Of Devonian Brachiopods, Broc S. Kokesh

Undergraduate Research Symposium 2016

Brachiopods are small animals that live on the seafloor and are abundant in the Devonian fossil record (420 to 360 million years ago), making them excellent subjects for studying evolution in ancient marine environments. Some species sported large spines that cover their exterior surfaces, although these spines are typically broken off during fossilization. Paleontologists have hypothesized that these spines developed as an evolutionary response to predation, yet few studies have tested this idea due to the scarcity of specimens with intact spines. Recent work has been able to get around this problem by examining injury markings caused by predators that …

Introduction To Biology, Shayla Williams, Kenya Lemon

Biological Sciences Grants Collections

This Grants Collection for Introduction to Biology was created under a Round Three ALG Textbook Transformation Grant.

Affordable Learning Georgia Grants Collections are intended to provide faculty with the frameworks to quickly implement or revise the same materials as a Textbook Transformation Grants team, along with the aims and lessons learned from project teams during the implementation process.

Documents are in .pdf format, with a separate .docx (Word) version available for download. Each collection contains the following materials:

• Linked Syllabus
• Initial Proposal
• Final Report

Does Phosphorus From Agricultural Tile Drains Fuel Algal Blooms?, Delilah R. Clement

Masters Theses

Phosphorus (P) is often implicated as a contributing factor to algal blooms. Attention has been focused on P in surface runoff, but agricultural tile drains also can be a source. Lake Macatawa is a hypereutrophic lake located in west Michigan, and the watershed is dominated by row crop agriculture. Further research is needed to understand the influence of bioavailable P originating from tile drains on water quality in Lake Macatawa. The objectives of this study were to 1) conduct a tile drain effluent sampling survey to assess their importance as a source of P in the Macatawa Watershed; 2) investigate …

History Of Lungs Of The Planet Mosaic, Susan Hunt

Documentation

A brief history and description of Lungs of the Planet, a tile mural depicting line drawings on individual 6 x 6 inch tiles, as well as larger color images of blossoms, fruit, and birds to symbolize the cycle of life.

The mural was created as a collaborative art project by students in the Natural World Cluster of the Monserrat First Year Program at the College of the Holy Cross. The project was led by Virginia Raguin, Distinguished Professor of Humanities at the College. Particpants included students, faculty, staff and community members.

The mural was installed on the west patio …

Variable Shifts In The Autumn Migration Phenology Of Soaring Birds In Southern Spain, Micah N. Scholer, Beatriz Martín, Miguel Ferrer, Alejandro Onrubia, Marc J. Bechard, Greg S. Kaltenecker, Jay D. Carlisle

Biology Faculty Publications and Presentations

While alteration of the migratory habits of birds is widely regarded as one of the most evident ecological effects of climate change, studies reporting shifts in migration phenology for long-lived, long-distance migrants have been few. Using time series of count data collected in southern Spain during autumn migration, we examined the magnitude and direction of phenological shifts for six common species of soaring birds. Many current methods for investigating phenological change rely on continuous data sets; however, these data may be unavailable for a variety of reasons. We used a cross-correlation analysis, which allowed us to compare recent data on …

The Effect Of Seasonal Fish Migration On Energy Budgets In Two Coastal Michigan Streams, Emily M. Dean

Masters Theses

Migratory fish are known to seasonally enter coastal stream systems but the magnitude of the effects these migrations have on stream energy budgets is not fully understood. The Laurentian Great Lakes have several introduced and native adfluvial fish, where only a few studies have investigated the impacts of their migration on energy budgets in Michigan coastal streams. We quantified the contribution of energy from Chinook salmon (Oncorhynchus tshawytscha) muscle and eggs, steelhead (Oncorhynchus mykiss) eggs, and larval white suckers (Catostomus commersonii) to coastal stream energy budgets. Energy densities and energy delivered to streams were estimated using bomb calorimetry and annual …

Liana Canopy Cover Mapped Throughout A Tropical Forest With High-Fidelity Imaging Spectroscopy, David C. Marvin, Gregory P. Asner, Stefan A. Schnitzer

Biological Sciences Faculty Research and Publications

Increasing size and abundance of lianas relative to trees are pervasive changes in Neotropical forests that may lead to reduced forest carbon stocks. Yet the liana growth form is chronically understudied in large-scale tropical forest censuses, resulting in few data on the scale, cause, and impact of increasing lianas. Satellite and airborne remote sensing provide potential tools to map and monitor lianas at much larger spatial and rapid temporal scales than are possible with plot-based forest censuses. We combined high-resolution airborne imaging spectroscopy and a ground-based tree canopy census to investigate whether tree canopies supporting lianas could be discriminated from …

Using Alien Resources: Caribbean Dwarf Geckos Nesting Communally In Invasive Flora, Justin M. Bernstein, Aaron H. Griffing, Juan D. Daza, Tony Gamble, Aaron M. Bauer

Biological Sciences Faculty Research and Publications

No abstract provided.

Transforming Ecosystems: When, Where, And How To Restore Contaminated Sites, Jason R. Rohr, Aïda M. Farag, Marc W. Cadotte, William H. Clements, James R. Smith, Cheryl P. Ulrich, Richard Woods

Integrative Biology Faculty and Staff Publications

Chemical contamination has impaired ecosystems, reducing biodiversity and the provisioning of functions and services. This has spurred a movement to restore contaminated ecosystems and develop and implement national and international regulations that require it. Nevertheless, ecological restoration remains a young and rapidly growing discipline and its intersection with toxicology is even more nascent and underdeveloped. Consequently, we provide guidance to scientists and practitioners on when, where, and how to restore contaminated ecosystems. Although restoration has many benefits, it also can be expensive, and in many cases systems can recover without human intervention. Hence, the first question we address is: "When …

School Of Biological Sciences News, 2016, School Of Biological Sciences

School of Biological Sciences News

Alumni newsletter of Illinois State University's School of Biological Sciences.

Patterns Of Olfactory Neurogenesis And Immune Response In Adult Zebrafish Following Damage Of The Olfactory Bulb, Darcy M. Trimpe

Dissertations

The adult zebrafish olfactory system, with its persistent neuronal turnover and abundant regenerative capacity, is an excellent model system for studies of adult brain plasticity. Reversible deafferentation, achieved by repeated intranasal irrigation with detergent, reduces bulbar innervation and affects bulb structure and function, while cessation of treatment permits reinnervation and recovery of bulb volume. Alterations in cell genesis may account for this phenomenon. This study focuses on adult neurogenesis in the zebrafish olfactory system following reversible deafferentation and direct olfactory bulb injury.

Potential alterations in cell proliferation, differentiation, migration, and survival in the olfactory bulb following single and repeated intranasal …

Biology News, Spring 2016, University Of Northern Iowa. Department Of Biology.

Biology News

Contents:

--Greetings from the Department of Biology
--Index
--Department of Biology Alumni
--Dr. Suzanne Bartlett Named as Alumni in Residence
--Dr. Robert Good Gives Keynote Address at the 2015
--UNI SURP Symposium
--Alumnus, Dr. Michael Gray, selected as Honorary Member of Entomological Society of America
--UNI Biology - Brazil Connection
--Two UNI Biology Alumni Assume Directorships at Vanderbilt University
--Biology Students
--Students Appreciate Scholarship Funding
--Biology Students and Alumni
--NSF Provides Funding for Research on Unique Parasites
--Bees and “Colony Collapse Disorder”
--UNI Biology Students Present Research at NCUR Annual Conference in Cheney, Washington
--Marine Biology Club Visits the Shedd …

One Signal, Two Behaviors: Odor Discrimination In Unmated Versus Mated Female Green Bottle Flies, Lucilia Sericata, George Iannantuono

Honors Theses

The green bottle fly, Lucilia sericata, is of critical importance in the field of forensic entomology since it is one of the first insects to arrive at a freshly deceased carcass. These flies use a highly tuned and selective olfactory system to identify and locate the carcass; response to the decomposition odor usually occurs within minutes. Male flies use the carcass for a small protein meal and for locating females while females use the carcass for feeding (unmated) and egg-laying (mated). This divergence in behavior to a common odor cue is the subject of this thesis proposal: do unmated …

Finding A Correlation Between Zooplankton Abundance And The Aggregation Of Abudefduf Saxatilis (Sergeant Major Damselfish) Beneath Boats, William Duritsch

Honors Theses

Abudefduf saxatilis, or sergeant major damselfish, are a common reef fish in the Caribbean and western Atlantic that form large feeding aggregations. Abudefduf saxatilis are primarily planktivorous, with zooplankton making up over 50% of their diet. Zooplankton are known to have diel movements to avoid predation, which have been shown to be triggered by the presence of ultra violet radiation. Beneath boats along the coast of Bonaire, aggregations of A. saxatilis have been observed, but why they prefer these areas over the open water column had not previously been examined. The abundance of zooplankton was estimated beneath boats as …

The Effects Of Low Dam Removal And Kayak Run Installation On The Biodiversity Of Fish And Macroinvertebrates In The Great Miami River In Downtown Dayton, Ohio, Sarah Anne Stalder

Honors Theses

Five Rivers Metroparks and the Miami Conservancy District have made plans to remove the upper portion of the Monument Avenue low-head dam in downtown Dayton due to the hazard it poses for recreation on the river and its negative impact on water quality and biodiversity. The plans also include modifying the dam with “kayak drops” and the construction of a second kayak drop slightly upstream of the location of the current low dam to enhance recreational opportunities on the river. Typically, low dam removal alter the flow and depth of a river, especially above the dam in the impounded area …

Distribution Of Shell Formation Proteins In Oyster Hemolymph, Hemocytes, And Mantle Tissue, Donald Joseph Kleppel

Honors Theses

The occurrence and composition of L,3-4-dihydroxyphenylalanine-containing proteins (L-DOPA proteins) that participate in oyster shell formation has not been fully determined. It is known that the oyster mantle tissue is primarily responsible for shell formation and recent research has demonstrated the involvement of the hemolymph (blood) and hemocytes (blood cells). L-DOPA proteins are known to aid in the cross linking of shell formation proteins, in turn creating the insoluble organic matrix formed to produce the organic component of the shell. Using the biomarker amino acid L-DOPA, this research focuses on determining the localization of these shell formation proteins in hemocytes, hemolymph, …

The Coursesource Bioinformatics Learning Framework, Sarah C.R. Elgin, Anne Rosenwald, Mark A. Pauley, Lonnie Welch, Robin Wright, Jessamina Blum

Biology Faculty Research

No abstract provided.

Judging Adaptive Management Practices Of U.S. Agencies, Robert L. Fischman, J. B. Ruhl

Articles by Maurer Faculty

All U.S. federal agencies administering environmental laws purport to practice adaptive management (AM), but little is known about how they actually implement this conservation tool. A gap between the theory and practice of AM is revealed in judicial decisions reviewing agency adaptive management plans. We analyzed all U.S. federal court opinions published through 1 January 2015 to identify the agency AM practices courts found most deficient. The shortcomings included lack of clear objectives and processes, monitoring thresholds, and defined actions triggered by thresholds. This trio of agency shortcuts around critical, iterative steps characterizes what we call AM-lite. Passive AM differs …

Epigeal Fauna Of Bosque Protector Cerro Candelaria, Justine Albers

Independent Study Project (ISP) Collection

Pitfall traps are commonly used to sample epigeal fauna, and are especially utilized for the collection of ground-dwelling arthropods; however, this sampling method has yet to be employed in Cerro Candelaria, a protected cloud forest reserve in Tungurahua, Ecuador. Pitfall trap systems were established at two different sites in the reserve that differed in elevation and forest type. Although individuals from 4 different phlya, 11 classes and 17 orders were encountered over the duration of the study, pitfalls were most effective at sampling Coleoptera, which comprised 40% of the total catch across both sites. The two communities of beetle …

Case-Oriented Pathways Analysis In Pancreatic Adenocarcinoma Using Data From A Sleeping Beauty Transposon Mutagenesis Screen, Yen Yi Ho, Timothy K. Starr, Rebecca S. Larue, David A. Largaespada

Faculty Publications

Background: Mutation studies of pancreatic ductal adenocarcinoma (PDA) have revealed complicated heterogeneous genomic landscapes of the disease. These studies cataloged a number of genes mutated at high frequencies, but also report a very large number of genes mutated in lower percentages of tumors. Taking advantage of a well-established forward genetic screening technique, with the Sleeping Beauty (SB) transposon, several studies produced PDA and discovered a number of common insertion sites (CIS) and associated genes that are recurrently mutated at high frequencies. As with human mutation studies, a very large number of genes were found to be altered by transposon insertion …