Biology Commons^™

Lianas And Soil Nutrients Predict Fine‐Scale Distribution Of Above‐Ground Biomass In A Tropical Moist Forest, Alicia Ledo, Janine B. Illian, Stefan A. Schnitzer, S. Joseph Wright, James W. Dalling, David F.R.P. Burslem

Biological Sciences Faculty Research and Publications

Summary

1. Prediction of carbon dynamics in response to global climate change requires an understanding of the processes that govern the distribution of carbon stocks. Above‐ground biomass (AGB) in tropical forests is regulated by variation in soil fertility, climate, species composition and topography at regional scales, but the drivers of fine‐scale variation in tropical forest AGB are poorly understood. The factors that control the growth and mortality of individual trees may be obscured by the low resolution of studies at regional scales.
2. In this paper, we evaluated the effects of soil nutrients, topography and liana abundance on the fine‐scale spatial distribution …

From Facultative To Obligatory Parental Care: Interspecific Variation In Offspring Dependency On Post-Hatching Care In Burying Beetles, Alexandra Capodeanu-Nägler, Eva M. Keppner, Manfred Ayasse, Heiko Vogel, Anne-Katrin Eggert, Scott K. Sakaluk, Sandra Steiger

Faculty Publications – Biological Sciences

Studies on the evolution of parental care have focused primarily on the costs and benefits of parental care and the life-history attributes that favour it. However, once care evolves, offspring in some taxa appear to become increasingly dependent on their parents. Although offspring dependency is a central theme in family life, the evolutionary dynamics leading to it are not fully understood. Beetles of the genus Nicrophorus are well known for their elaborate biparental care, including provisioning of their young. By manipulating the occurrence of pre- or post-hatching care, we show that the offspring of three burying beetle species, N. orbicollis …

Telonicher Marine Laboratory, Hsu Telonicher Marine Laboratory

Newsletters

No abstract provided.

Variation In Alkaloid Defenses Of The Dendrobatid Poison Frog Oophaga Pumilio Lead To Differences In Avaoidance By Arhtropods, Sarah Bolton

Masters Theses

Conspicuously colored dendrobatid frogs sequester alkaloid-based defenses from dietary arthropods, resulting in considerable alkaloid variation among populations. Although alkaloids act as a defense against predation, relatively little is known about how alkaloid variation is perceived and functions as a defense against predators. Throughout its geographic range, previous studies have found the dendrobatid frog Oophaga pumilio to have particularly variable alkaloids, and that differences in these alkaloids are associated with differences in toxicity to laboratory mice. Although toxicity is one measure of alkaloid variation, predator avoidance of dendrobatids might simply be due to the bitter or unpalatable nature of alkaloid defenses. …

Sequestered Alkaloid Defenses In The Dendrobatid Poison Frog Oophaga Pumilio Provide Variable Protection From Microbial Pathogens, Kyle Hovey

Masters Theses

Amphibians produce the majority of their defensive chemicals, however alkaloid defenses in poison frogs are sequestered from dietary arthropods. Alkaloids function as a defense against predators, and certain types appear to inhibit microbial growth. However, alkaloid defenses vary considerably among populations of poison frogs, reflecting geographic differences in availability of dietary arthropods. Consequently, environmentally driven differences in poison frog alkaloid defenses may have significant implications regarding their protection against pathogens. While natural alkaloid mixtures in poison frogs have recently been shown to inhibit growth of non-pathogenic microbes, no studies have examined the effectiveness of alkaloids against microbes that infect frogs. …

Chemical Signaling In Asian Elephants (Elephas Maximus): Concentration Effects With Applications For Management And Conservation, Chase Andrew Ladue

Masters Theses & Specialist Projects

Asian elephants utilize two chemical signals that have been described to function in reproduction: (1) (Z)-7-dodecenyl acetate (Z7-12:Ac) is released by females near ovulation, and (2) frontalin is released by males around the time of musth. Signaling theory posits that the concentration at which either compound is emitted should have implications for the response of the receiver, varying with factors such as sex and reproductive experience. Here, the objectives were to: (1) investigate the effect of concentration on receiver chemosensory behavior in an effort to identify detection thresholds and concentrations of maximum response for reproductively experienced or inexperienced male and …

Effects Of Sleep Fragmentation On The Immune System Of Zebra Finches Using Cytokine Gene Expression, Laken N. Cooper

Masters Theses & Specialist Projects

Sleep loss is known to trigger an inflammatory response and increase serum corticosterone in both human and murine models. However, very little evidence is available on the potential effects of sleep loss in avian models. This study aims to construct a profile using cytokine gene expression data to determine how birds respond to sleep loss in a controlled environment. I investigated changes in pro-inflammatory (IL-1β and IL-6) and anti-inflammatory (IL-10) cytokine gene expression in the periphery (fat, liver, spleen, and heart) and brain (hypothalamus, hippocampus, and apical hyperpallium) in zebra finches exposed to a novel sleep fragmentation method. Serum corticosterone, …

Impacts Of Habitat Fragmentation On The Cranial Morphology Of A Threatened Desert Fish (Cyprinodon Pecosensis), Michael Chaise Gilbert

Masters Theses & Specialist Projects

Drastic alterations to the North American Southwest’s hydrology have highly influenced resident fish communities. In New Mexico and Texas, the Pecos River has been severely altered as a result of water manipulation, isolating backwaters and various habitats that were once connected to the main river. Cyprinodon pecosensis (Pecos pupfish) has been highly impacted due to the effects of anthropogenic water manipulation, as well as species introductions. Cyprinodon pecosensis populations have become isolated and scattered, residing in sinkholes, remnant lakes, and static backwaters, thus creating numerous micropopulations. The purpose of this study was to assess the morphological variation in cranial features …

Should Scientists Be Required To Use A Model-Based Solution To Adjust For Possible Distance-Based Detectability Bias?, Richard L. Hutto

Biological Sciences Faculty Publications

The most popular method used to gain an understanding of population trends or of differences in bird abundance among land condition categories is to use information derived from point counts. Unfortunately, various factors can affect one’s ability to detect birds, and those factors need to be controlled or accounted for so that any difference in one’s index among time periods or locations is an accurate reflection of differences in bird abundance and not differences in detectability. Avian ecologists could use appropriately sized fixed-area surveys to minimize the chance that they might be deceived by distance-based detectability bias, but the current …

Small Packages, Big Returns: Uncovering The Venom Diversity Of Small Inverebrate Conoidean Snails, J. Gorson, M. Holford

Publications and Research

Venomous organisms used in research were historically chosen based on size and availability. This opportunity-driven strategy created a species bias in which snakes, scorpions, and spiders became the primary subjects of venom research. Increasing technological advancements have enabled interdisciplinary studies using genomics, transcriptomics, and proteomics to expand venom investigation to animals that produce small amounts of venom or lack traditional venom producing organs. One group of non-traditional venomous organisms that have benefitted from the rise of -omic technologies is the Conoideans. The Conoidean superfamily of venomous marine snails includes, the Terebridae, Turridae (s.l), and Conidae. Conoidea venom is used for …

Gray Bat Migration In Missouri, Cheyenne Leigh Gerdes

Graduate Theses/Dissertations

Migration is an important and understudied aspect of the life histories of many species, particularly bats. Migration impacts conservation efforts, including efforts to manage the impacts of wildlife disease. The federally endangered gray bat (Myotis grisescens) is a migratory species with documented infections by Pseudogymnoascus destructans, the fungus that causes White-nose Syndrome (WNS). To better understand migration as it might relate to WNS, I quantified the timing and location of gray bat movements in Missouri using acoustic detectors and bat banding. I recorded calls at 4 maternity sites from January to May 2015, and used the R package PVAClone to …

Multitrophic Diversity Effects Of Network Degradation, Elizabeth Nichols, C. A. Peres, J. E. Hawes, S. Naeem

Biology Faculty Works

Predicting the functional consequences of biodiversity loss in realistic, multitrophic communities remains a challenge. No existing biodiversity–ecosystem function study to date has simultaneously incorporated information on species traits, network topology, and extinction across multiple trophic levels, while all three factors are independently understood as critical drivers of post-extinction network structure and function. We fill this gap by comparing the functional consequences of simulated species loss both within (monotrophic) and across (bitrophic) trophic levels, in an ecological interaction network estimated from spatially explicit field data on tropical fecal detritus producer and consumers (mammals and dung beetles). We simulated trait-ordered beetle and …

Cloning, Characteristics, And Functional Analysis Of Rabbit Nadph Oxidase 5, Feng Chen, Caiyong Yin, Christiana Dimitropoulou, David J.R. Fulton

Bioelectrics Publications

Background: Nox5 was the last member of the Nox enzyme family to be identified. Functionally distinct from the other Nox isoforms, our understanding of its physiological significance has been hampered by the absence of Nox5 in mouse and rat genomes. Nox5 is present in the genomes of other species such as the rabbit that have broad utility as models of cardiovascular disease. However, the mRNA sequence, characteristics, and functional analysis of rabbit Nox5 has not been fully defined and were the goals of the current study.

Methods: Rabbit Nox5 was amplified from rabbit tissue, cloned, and sequenced. COS-7 cells were …

Understanding Tradeoffs Between Food And Predation Risks In A Specialist Mammalian Herbivore, Jamie L. Utz, Lisa A. Shipley, Janet L. Rachlow, Tamara Johnstone-Yellin, Meghan Camp, Jennifer Sorenson Forbey

Biology Faculty Publications and Presentations

Understanding habitat use by animals requires understanding the simultaneous tradeoffs between food and predation risk within a landscape. Quantifying the synergy between patches that provide quality food and those that are safe from predators at a scale relevant to a foraging animal could better reveal the parameters that influence habitat selection. To understand more thoroughly how animals select habitat components, we investigated tradeoffs between diet quality and predation risk in a species endemic to sagebrush Artemisia spp. communities in North America, the pygmy rabbitBrachylagus idahoensis. This species is a rare example of a specialist herbivore that relies almost entirely …

Determination Of Evolutionary History Of Big Bluestem Populations Through Chloroplast Dna Analysis, Tej Man Tamang

Master's Theses or Doctor of Nursing Practice

Andropogon gerardii Vitman (big bluestem) is one of the most dominant and widely distributed grasses of the North American prairie. It is widely used in restoration projects for the recovery of grassland ecosystems. A. gerardii demonstrates genetic and adaptive variation among populations across the prairie. With the objective to understand the evolutionary relationship between the A. gerardii populations, two noncoding chloroplast DNA (cpDNA) spacers (rpl32-trnL(UAG) and trnQ(UUG)-rps16) were studied. Similarly, genetic differentiation among the populations was also calculated based on the spacers. The trnQ(UUG)-rps16 spacer had more polymorphic sites than the rpl32-trnL(UAG) spacer. A phylogenetic tree based on combined cpDNA …

Radial Glia Inhibit Peripheral Glial Infiltration Into The Spinal Cord At Motor Exit Point Transition Zones, Cody J. Smith, Kimberly Johnson, Taylor G. Welsh, Michael J.F. Barresi, Sarah Kucenas

Biological Sciences: Faculty Publications

In the mature vertebrate nervous system, central and peripheral nervous system (CNS and PNS, respectively) GLIA myelinate distinct motor axon domains at the motor exit point transition zone (MEP TZ). How these cells preferentially associate with and myelinate discrete, non-overlapping CNS versus PNS axonal segments, is unknown. Using in vivo imaging and genetic cell ablation in zebrafish, we demonstrate that radial glia restrict migration of PNS glia into the spinal cord during development. Prior to development of radial glial endfeet, peripheral cells freely migrate back and forth across the MEP TZ. However, upon maturation, peripherally located cells never enter the …

Structural Characterization Of Tick Cement Cones Collected From In Vivo And Artifical Membrane Blood-Fed Lone Star Ticks (Ambylomma Americanum), Rebekah Bullard, Paige Allen, Chien-Chung Chao, Jessica Douglas, Pradipta K. Das, Sarah E. Morgan, Wei-Mei Ching, Shahid Karim

Faculty Publications

The Lone Star tick, Amblyomma americanum, is endemic to the southeastern United States and capable of transmitting pathogenic diseases and causing non-pathogenic conditions. To remain firmly attached to the host, the tick secretes a proteinaceous matrix termed the cement cone which hardens around the tick’s mouthparts to assist in the attachment of the tick as well as to protect the mouthparts from the host immune system. Cement cones collected from ticks on a host are commonly contaminated with host skin and hair making analysis of the cone difficult. To reduce the contamination found in the cement cone, we have adapted …

Heterochrony Of Cranial Bones In Amniota And The Phylogenetic Placement Of Testudines, Kathleen Sagarin

Masters Theses

The study of developmental systems may help to resolve the disagreement between morphological data and molecular data when it comes to the placement of Testudines among Amniota. Among other unique morphological adaptations, turtles possess an anapsid (unfenestrated) condition of the temporal region of the skull. If turtles are descended from diapsids, as molecular data suggests, this implies a rapid transformation of the temporal region from the diapsid condition to the anapsid condition. This study specifically addressed temporal bone heterochony among amniotes using the methods of Continuous Analysis (Germain and Laurin 2009) and Parsimov-based Genetic Inference (Harrison and Larsson 2008) to …

Plant Growth Promotion By Bradyrhizobium Japonicum Under Heavy Metal Stress, M. Seneviratne, S. Gunaratne, T. Bandara, L. Weerasundara, Nishanta Rajakaruna, G. Seneviratne, M. Vithanage

Biological Sciences

The increase in usage of heavy metals in different industrial activities causes their existence in effluents. Excessive concentrations of these heavy metals pollute soil and water. Heavy metals cause toxicities and other harmful effects not only in humans and animals but also in plants and soil microorganisms. Heavy metals disrupt many biochemical and physiological activities in bacteria, including growth, development, enzyme and hormone production. Indole acetic acid (IAA) is one of the most important hormones in plants, which is secreted by both bacteria and plants. The present study assessed the effects of Ni, Pb and Cu on the growth of …

Regional Extinction Risk And Conservation Priorities For Persian Gulf Marine Bony Fishes, Jack Ryan Buchanan

Biological Sciences Theses & Dissertations

Around the world, protected areas are the primary conservation measure used to combat biodiversity loss; however, these are often established without comprehensive species-specific information, leading to placement in areas that often do not address the processes that threaten biodiversity. To address this, International Union for Conservation of Nature Red List assessments are being utilized to determine species-specific threats and population status at the global and sub-global levels. This study examines the regional extinction risk for all known marine bony fishes of the Persian Gulf. About 8.3% of the 471 marine bony fishes assessed are at elevated risk of regional extinction. …

Gfap-Positive Radial Glial Cells Are An Essential Progenitor Population For Later-Born Neurons And Glia In The Zebrafish Spinal Cord, Kimberly Johnson, Jessica Barragan, Sarah Bashiruddin, Cody J. Smith, Chelsea Tyrrell, Michael J. Parsons, Rosemarie Doris, Sarah Kucenas, Gerald B. Downes, Carla M. Velez, Caitlin Schneider, Catalina Sakai, Narendra Pathak, Katrina Anderson, Rachael Stein, Stephen H. Devoto, Jeff S. Mumm, Michael J.F. Barresi

Biological Sciences: Faculty Publications

Radial glial cells are presumptive neural stem cells (NSCs) in the developing nervous system. The direct requirement of radial glia for the generation of a diverse array of neuronal and glial subtypes, however, has not been tested. We employed two novel transgenic zebrafish lines and endogenous markers of NSCs and radial glia to show for the first time that radial glia are essential for neurogenesis during development. By using the gfap promoter to drive expression of nuclear localized mCherry we discerned two distinct radial glial-derived cell types: a major nestin+/Sox2+ subtype with strong gfap promoter activity and a minor Sox2+ …

The Maintenance Of Phenotypic Divergence Through Sexual Selection: An Experimental Study In Barn Swallows Hirundo Rustica, Rebecca Safran, Yoni Vortman, Brittany R. Jenkins, Joanna K. Hubbard, Matt Wilkins, Rachel J. Bradley, Arnon Lotem

School of Biological Sciences: Faculty Publications

Previous studies have shown that sexual signals can rapidly diverge among closely related species. However, we lack experimental studies to demonstrate that differences in trait-associated reproductive performance maintain sexual trait differences between closely related populations, in support for a role of sexual selection in speciation. Populations of Northern Hemisphere distributed barn swallows Hirundo rustica are closely related, yet differ in two plumage-based traits: ventral color and length of the outermost tail feathers (streamers). Here we provide experimental evidence that manipulations of these traits result in different reproductive consequences in two subspecies of barn swallow: (H. r. erythrogaster in North …

Arsenite Resistance Of Euglena Mutabilis, Nicole Loumarinett Rosendo Mercado, Doug G. Cole (Mentor)

Idaho Conference on Undergraduate Research

Euglena are photosynthetic unicellular protozoa. Commonly found in rivers, lakes and ponds, some Euglena are found in toxic environments, like areas of acid mine drainage where they can grow at low pH and in the presence of heavy metals and metalloids such as arsenite (e.g. Euglena mutabilis). The goal of this research is to determine if an Idaho Euglena isolate (SG6) belongs to the E. mutabilis species and to compare it’s level of arsenite resistance with other E. mutabilis strains. As part of the methodology, we have developed microtiter plate assays in which the cells are …

Sequencing And Comparative Analysis Of De Novo Genome Assemblies Of Streptomyces Aureofaciens Atcc 10762, Julien S. Gradnigo

School of Biological Sciences: Dissertations, Theses, and Student Research

Streptomyces aureofaciens is a Gram-positive Actinomycete used for commercial antibiotic production. Although it has been the subject of many biochemical studies, no public genome resource was available prior to this project. To address this need, the genome of S. aureofaciens ATCC 10762 was sequenced using a combination of sequencing platforms (Illumina and 454-shotgun). Multiple de novo assembly methods (SGA, IDBA, Trinity, SOAPdenovo2, MIRA, Velvet and SPAdes) as well as combinations of these methods were assessed to determine which provided the most robust assembly. Combination strategies led to a consistent overestimation of the total genome size. Empirical data from targeted …

Recumbence Behavior In Zoo Elephants: Determination Of Patterns And Frequency Of Recumbent Rest And Associated Environmental And Social Factors, Matthew Robert Holdgate, Cheryl L. Meehan, Jennifer N. Hogan, Lance J. Miller, Jeff Rushen, Anne-Marie De Passillé, Josesph Soltis, Jeff Andrews, David J. Shepherdson

Biology Faculty Publications and Presentations

Resting behaviors are an essential component of animal welfare but have received little attention in zoological research. African savanna elephant (Loxodonta africana) and Asian elephant (Elephas maximus) rest includes recumbent postures, but no large-scale investigation of African and Asian zoo elephant recumbence has been previously conducted. We used anklets equipped with accelerometers to measure recumbence in 72 adult female African (n = 44) and Asian (n = 28)elephants housed in 40 North American zoos. We collected 344 days of data and determined associations between recumbence and social, housing, management, and demographic factors. African elephants were recumbent less (2.1 hours/day, S.D. …

Bayesian Methods For Comparing Species Physiological And Ecological Response Curves, Michael B. Ashcroft, Angélica Casanova-Katny, Kerrie Mengersen, Todd N. Rosenstiel, Johanna D. Turnbull, Jane Wasley, Melinda J. Waterman, Gustavo E. Zúñiga, Sharon A. Robinson

Biology Faculty Publications and Presentations

Many ecological questions require information on species' optimal conditions or critical limits along environmental gradients. These attributes can be compared to answer questions on niche partitioning, species coexistence and niche conservatism. However, these comparisons are unconvincing when existing methods do not quantify the uncertainty in the attributes or rely on assumptions about the shape of species' responses to the environmental gradient. The aim of this study was to develop a model to quantify the uncertainty in the attributes of species response curves and allow them to be tested for substantive differences without making assumptions about the shape of the responses. …

Lof1 And Interacting Transcription Factors In Plant Development And Crop Yield, Zoe Yeoh, Elizabeth Luscher, Patricia Springer

Student Publications

Transcription factors (TFs) help ensure proper gene expression in developing tissues, and thus play a role in plant development and plant architecture. LATERAL ORGAN FUSION1, or LOF1, is a TF expressed in the organ boundaries of Arabidopsis thaliana. lof1 mutants have fused axillary branches and cauline leaves, which indicates importance in boundary development. Because transcription factors are known to act in complexes, we wanted to discover what other proteins interact with LOF1. We executed a yeast-2-hybrid (Y2H) screen that identified several TFs as potential interactors: WHIRLY 3 (WHY3), MYB DOMAIN PROTEIN32 (MYB32), HOMEOBOX-LEUCINE ZIPPER PROTEIN4 (HB4), and LIGHT RESPONSE BTB2 …

Anal Fin Pigmentation In Brachyrhaphis Fishes Is Not Used For Sexual Mimicry, Kandace Mary Hugentobler

Theses and Dissertations

Pigmentation patterns can be used as a communication signal in a variety of taxa, and can convey information relative to sexual selection, dominance, and species identification. Pigmentation is also sometimes used in mimicry to deceive the signal receiver into thinking the signaler is something other than itself. Mimicry can occur in several contexts, including sexual interactions, where one sex mimics another. There are relatively few examples of species with females that mimic males. Proposed hypotheses to explain female mimicry of males are that mimicry is used to reduce male harassment or that mimicry is used to display dominance over other …

Walking Behavior Of Zoo Elephants: Associations Between Gps-Measured Daily Walking Distances And Environmental Factors, Social Factors, And Welfare Indicators, Matthew Robert Holdgate, Cheryl L. Meehan, Jennifer N. Hogan, Lance J. Miller, Josesph Soltis, Jeff Andrews, David J. Shepherdson

Biology Faculty Publications and Presentations

Research with humans and other animals suggests that walking benefits physical health. Perhaps because these links have been demonstrated in other species, it has been suggested that walking is important to elephant welfare, and that zoo elephant exhibits should be designed to allow for more walking. Our study is the first to address this suggestion empirically by measuring the mean daily walking distance of elephants in North American zoos, determining the factors that are associated with variations in walking distance, and testing for associations between walking and welfare indicators. We used anklets equipped with GPS data loggers to measure outdoor …

Hotspots, Extinction Risk And Conservation Priorities Of Greater Caribbean And Gulf Of Mexico Marine Bony Shorefishes, Christi Linardich

Biological Sciences Theses & Dissertations

Understanding the status of species is important for allocation of resources to redress biodiversity loss. Regional organizations tasked with managing threats to the 1,360 marine bony shorefishes of the Caribbean and Gulf of Mexico would benefit from a delineation of conservation priorities. However, prior to this study, conservation status was known for only one quarter of these shorefishes. Extinction risk assessment under IUCN Red List Criteria is a widely-used, objective method to communicate species-specific conservation needs. Data were collated on each species’ distribution, population, habitats and threats and experts at three Red List workshops assigned a global level extinction risk …