Biology Commons^™

Full Issue: Volume 10, Number 1

The Science Journal of the Lander College of Arts and Sciences

No abstract provided.

Jet Lag And The Biological Clock, Shayna Melool

The Science Journal of the Lander College of Arts and Sciences

Jet lag is a resulting disorder of flight travel across several time zones. Circadian rhythms, the approximately 24 hour system that our bodies follow, become distorted following such a trip, as the body’s internal biological clock has not yet caught up to the current local time zone. Time cues and other external factors are necessary to adjust the clocks and reverse the negative effects of jet lag.

A Revision Of Megalocraerus Lewis, 1902 (Coleoptera, Histeridae: Exosternini), Michael S. Caterino, Alexey K. Tishechkin

Publications

The formely monotypic Neotropical genus Megalocraerus Lewis is revised to include five species, known from southeastern Brazil to Costa Rica: M. rubricatus Lewis, M. mandibularis sp. n., M. chico sp. n., M. madrededios sp. n., and M. tiputini sp. n. We describe the species, map their distributions, and provide a key for their identification. Their subcylindrical body form and emarginate mesosternum have previously hindered placement to tribe, although their curent assignment to Exosternini now appears well supported by morphological evidence. Nothing is known of the natural history of the species.

The Effects Of Wound Healing On Innate Immune Function In Grass Lizards (Takydromus Viridipunctatus), Julianne Wood, Alison Webb, Lorin A. Neuman-Lee, Susannah S. French

Biology Posters

To better understand how an animal’s physiological regulation of the immune system can shift in response to a physical stressor, we investigated changes in immune function and circulating plasma testosterone in response to a cutaneous wound in male grass lizards (Takydromus viridipunctatus).

The Effects Of Cold And Freezing Temperatures On The Blood Brain Barrier And Aquaporin 1, 4, And 9 Expression In Cope's Gray Treefrog (Hyla Chrysoscelis), Dalal Nouruldeen Felemban

Browse all Theses and Dissertations

In sub-freezing temperatures, cerebrospinal fluid (CSF) and blood plasma within the brain of freeze-tolerant gray treefrogs, Hyla chrysoscelis, are likely to freeze. We hypothesized that this would challenge blood-brain barrier (BBB) integrity and volume regulation for cells in the brain. Our first hypothesis, tested as cerebral Evans blue permeability, was not supported; BBB integrity appeared uncompromised by cold. Our second hypothesis, tested as changing expression of aquaporin (AQP) proteins, was partially supported. Whole-brain expression (Western blot) of AQP1 and AQP4 were unchanged by cold conditions, but AQP9 expression increased in thawed animals. AQP1 was found (immunohistochemistry) in ependymal cells, endothelial …

Spatial Distribution Of Earthworms In An East Texas Forest Ecosystem, Melissa A. Bozarth, Kenneth W. Farrish, George A. Damoff, James Van Kley, J. Leon Young

Faculty Publications

Earthworms were collected and identified in different ecological habitats of the Stephen F. Austin Experimental Forest (SFAEF) in the Piney Woods Ecoregion (PWE) of Texas. Earthworm spatial distribution data were collected over four distinct ecological habitats with a range of soil conditions and vegetative cover. A total of 128 sampling plots were surveyed in two different, broadly defined locations (mesic slope = 68 plots, dry-mesic upland = 60 plots). Using multivariate classification/ordination (TWINSPAN) and detrended correspondence analysis (DCA) of overstory vegetation data, these two locations were further divided into four distinct habitats: dry-mesic mixed upland, transitional zone, mesic slope and …

Dentine Oxygn Isotopes (Δ18o) As A Proxy For Odontocete Distributions And Movements., Cory J.D. Matthews, Fred J. Longstaffe, Steven H. Fergispm

Earth Sciences Publications

Spatial variation in marine oxygen isotope ratios ( δ¹⁸O) resulting from differential evaporation rates and precipitation inputs is potentially useful for characterizing marine mammal distributions and tracking movements across δ¹⁸O gradients. Dentine hydroxyapatite contains carbonate and phosphate that precipitate in oxygen isotopic equilibrium with body water, which in odontocetes closely tracks the isotopic composition of ambient water. To test whether dentine oxygen isotope composition reliably records that of ambient water and can therefore serve as a proxy for odontocete distribution and movement patterns, we measured δ¹⁸O values of dentine structural carbonate (δ^{18 …}

Testosterone, Migration Distance, And Migratory Timing In Song Sparrows Melospiza Melodia, Alannah H. Lymburner, Tosha R. Kelly, Keith A. Hobson, Elizabeth A. Macdougall-Shackleton, Scott A. Macdougall-Shackleton

Biology Publications

In seasonally migratory animals, migration distance often varies substantially within populations such that individuals breeding at the same site may overwinter different distances from the breeding grounds. Shorter migration may allow earlier return to the breeding grounds, which may be particularly advantageous to males competing to acquire a breeding territory. However, little is known about potential mechanisms that may mediate migration distance. We investigated naturally-occurring variation in androgen levels at the time of arrival to the breeding site and its relationship to overwintering latitude in male and female song sparrows (Melospiza melodia). We used stable isotope analysis of hydrogen …

Purification Of Recombinant Spider Silk Protein From Escherichia Coli., Randolph V. Lewis, Justin Jones, Todd Brown

Biology Posters

Spider silk has many applications including human health (sutures, vaccine encapsulations, i.e.) and military usage (underwater Velcro-type fasteners). In order to test these applications, we need large quantities of spider silk protein to use in our experiments. One way to make spider silk is by using Escherichia coli (E. Coli) to produce the protein. E. Coli has many advantages: it can be produced in larger amounts, it is inexpensive to grow, and it can be easily transported. We usually start with a culture mass weighing 4 kg but we are scaling up to produce even greater amounts of product. The …

Geographic Patterns And Possibility Of Predation, Jennica Blasi

Biology Posters

A poster documenting if lizard and feral cats inhabit the same areas in the St. George, UT region.

Stimulation With A 130-Mt Magnetic Field Improves Growth And Biochemical Parameters In Lupin (Lupinus Angustifolius L.), Magdalena Mroczek Zdyrska, Krzysztof Kornarzynski, Stanislaw Pietruszewski, Mariusz Gagos

Turkish Journal of Biology

The influence of magnetic field stimulation (MFS) on plants is a subject of intense research. The influence of MFS on plants varies depending on its intensity, time of exposure, and form of application. Weak MFS has beneficial effects on physiological and biochemical processes in plant tissues. Lupins (Lupinus spp.) are economically and agriculturally important plants used mainly in livestock feeding or in human consumption. The effects of a stationary magnetic field (130 mT) on the mitotic activity and selected biochemical parameters of lupin (Lupinus angustifolius L.) were evaluated. Nonexposed plants were used as the control. It was noted that the …

Calorie Restriction Effect On Circadian Clock Gene Expression, Sonal Arvind Patel

ETD Archive

Calorie Restriction (CR) is a powerful paradigm known to delay aging and thus increase longevity in several organisms, from yeast to non-human primates. Many molecular pathways have been proposed to mediate the beneficial effects of CR, however, the mechanism is still unknown. Circadian clock which is an internal time keeping system is regulated by feeding. Thus our aim was to study the effect of CR on the circadian clock. Here we show that CR significantly affects the expression of circadian clock genes in mice at the mRNA and protein levels, suggesting that CR reprograms the clocks at the transcriptional and …

Suppression Of Pulmonary Innate Immunity By Pneumoviruses, Jayeeta Dhar

ETD Archive

Pneumonia Virus of Mice (PVM) and Respiratory Syncytial Virus (RSV) are negative sense, single-stranded, enveloped RNA viruses from Pneumovirus genus, Paramyxoviridae family. RSV is the leading cause of respiratory diseases in infants. PVM causes similar respiratory illness in mice. PVM is used as an animal model to study RSV pathogenesis because of its similarity with RSV infection. Viral infection induces type I interferon (IFN) response as an antiviral strategy. PVM and RSV both have two non-structural (NS) proteins that are known to be IFN antagonists. While RSV can target different signaling components of IFN pathway, the mechanism of IFN suppression …

Effects Of Hypoxic Conditions On Skeletal Myoblasts, Shuai Zhao

ETD Archive

Hypoxic injury in skeletal muscle occurs in response to musculoskeletal traumas, diseases and following reconstructive and transplantation surgeries. However, the molecular mechanisms responsible for hypoxic injury in skeletal myoblasts have yet to be fully investigated. Understanding of these molecular mechanisms would identify potential therapeutic targets. Herein, we have determined that treatment with cobalt chloride (CoCl2, a hypoxia mimicking agent) first leads to an inhibition of proliferation followed by a decrease in the number of viable myoblasts over time. FACS analysis revealed a marked increase in G2/M arrest after 24 hours of treatment. We next assessed PARP cleavage, a well-known hallmark …

Effect Of The Il-1 Receptor Antagonist Kineret® On Disease Phenotype In Mdx Mice., Margaret E. Benny Klimek, Arpana Sali, Sree Rayavarapu, Jack Van Der Meulen, Kanneboyina Nagaraju

Genomics and Precision Medicine Faculty Publications

Duchenne muscular dystrophy (DMD) is an X-linked muscle disease caused by mutations in the dystrophin gene. The pathology of DMD manifests in patients with progressive muscle weakness, loss of ambulation and ultimately death. One of the characteristics of DMD is muscle inflammation, and dystrophin-deficient skeletal muscles produce higher levels of the pro-inflammatory cytokine interleukin 1β (IL-1β) in response to toll like receptor (TLR) stimulation compared to controls; therefore, blocking the IL-1β pathway could improve the disease phenotype in mdx mice, a mouse model of DMD. Kineret® or IL-1Ra is a recombinant IL-1 receptor antagonist approved by the FDA for treating …

Glucocorticoid Receptor (Nr3c1) Variants Associate With The Muscle Strength And Size Response To Resistance Training., Garrett I Ash, Matthew A Kostek, Harold Lee, Theodore J Angelopoulos, Priscilla M Clarkson, Paul M Gordon, Niall M Moyna, Paul S Visich, Robert F Zoeller, Thomas B Price, Joseph M. Devaney, Heather Gordish-Dressman, Paul D Thompson, Eric P. Hoffman, Linda S Pescatello

Genomics and Precision Medicine Faculty Publications

Glucocorticoid receptor (NR3C1) polymorphisms associate with obesity, muscle strength, and cortisol sensitivity. We examined associations among four NR3C1 polymorphisms and the muscle response to resistance training (RT). European-American adults (n = 602, 23.8±0.4yr) completed a 12 week unilateral arm RT program. Maximum voluntary contraction (MVC) assessed isometric strength (kg) and MRI assessed biceps size (cm2) pre- and post-resistance training. Subjects were genotyped for NR3C1 -2722G>A, -1887G>A, -1017T>C, and +363A>G. Men carrying the -2722G allele gained less relative MVC (17.3±1.2vs33.5±6.1%) (p = 0.010) than AA homozygotes; men with -1887GG gained greater relative MVC than A allele carriers …

Effects On Muscle Tissue Remodeling And Lipid Metabolism In Muscle Tissue From Adult Patients With Polymyositis Or Dermatomyositis Treated With Immunosuppressive Agents., Ingela Loell, Joan Raouf, Yi-Wen Chen, Rongye Shi, Inger Nennesmo, Helene Alexanderson, Maryam Dastmalchi, Kanneboyina Nagaraju, Marina Korotkova, Ingrid E Lundberg

Genomics and Precision Medicine Faculty Publications

BACKGROUND: Polymyositis (PM) and dermatomyositis (DM) are autoimmune muscle diseases, conventionally treated with high doses of glucocorticoids in combination with immunosuppressive drugs. Treatment is often dissatisfying, with persisting muscle impairment. We aimed to investigate molecular mechanisms that might contribute to the persisting muscle impairment despite immunosuppressive treatment in adult patients with PM or DM using gene expression profiling of repeated muscle biopsies.

METHODS: Paired skeletal muscle biopsies from six newly diagnosed adult patients with DM or PM taken before and after conventional immunosuppressive treatment were examined by gene expression microarray analysis. Selected genes that displayed changes in expression were analyzed …

Survival Of Walleye Eggs In Upper Red Lake And The Tamarac River, Phillip Oswald

Journal of Earth and Life Science

Walleyes experience spawning runs each spring in the Tamarac River, a tributary of the Red Lakes. However, data about walleye egg survival in the lake and river is lacking. Mesh cages were placed in both the Tamarac River and Upper Red Lake to compare survival rates. A total of twenty cages were set, ten in the river and ten in the lake. Each cage contained one hundred fertilized eggs which were checked every third day to measure survival. Temperature (°C), dissolved oxygen (mg/L), and pH were measured at each cage location. The river had an average survival rate of 22% …

Alterations In Plasma Protein C Activity Levels Following Apheresis Platelet Donation And Whole Blood Donation, Frances Duggan, Kathleen O'Sullivan, Joan P. Power, Michael Healy, William G. Murphy

Department of Biological Sciences Publications

Citrate toxicity from platelet apheresis donation has been extensively reported. Effects include symptomatic adverse reactions, silent prolongation of QTc interval on an electrocardiogram and long-term bone effects. While haemostatic impairment is not of concern in healthy plateletpheresis donors, these donors receive doses of citrate during the procedures that induce significant in vivo anticoagulation. We wished to measure the effects this process has on other markers of haemostatic homeostasis, and, in particular, on protein C activity levels. Protein C binds to its activation complex through divalent cation bridges, and is, therefore, susceptible to inactivation by citrate: an effect on protein C …

Getting The Hologenome Concept Right: An Eco-Evolutionary Framework For Hosts And Their Microbiomes, K. R. Theis, N. M. Dheilly, J. L. Klassen, R. M. Brucker, J. F. Baines, T. C. G. Bosch, J. F. Cryan, Scott F. Gilbert, C. J. Goodnight, E. A. Lloyd, J. Sapp, P. Vandenkoornhuyse, I. Zilber-Rosenberg, E. Rosenberg, S. R. Bordenstein

Biology Faculty Works

Given the complexity of host-microbiota symbioses, scientists and philosophers are asking questions at new biological levels of hierarchical organization—what is a holobiont and hologenome? When should this vocabulary be applied? Are these concepts a null hypothesis for host-microbe systems or limited to a certain spectrum of symbiotic interactions such as host-microbial coevolution? Critical discourse is necessary in this nascent area, but productive discourse requires that skeptics and proponents use the same lexicon. For instance, critiquing the hologenome concept is not synonymous with critiquing coevolution, and arguing that an entity is not a primary unit of selection dismisses the fact that …

Homo Heidelbergensis: The Tool To Our Success, Alexander Burkard

AUCTUS: The Journal of Undergraduate Research and Creative Scholarship

Homo heidelbergensis, a physiological variant of the species Homo sapien, is an extinct species that existed in both Europe and parts of Asia from 700,000 years ago to roughly 300,000 years ago (carbon dating). This “subspecies” of Homo sapiens, as it is formally classified, is a direct ancestor of anatomically modern humans, and is understood to have many of the same physiological characteristics as those of anatomically modern humans while still expressing many of the same physiological attributes of Homo erectus, an earlier human ancestor. Since Homo heidelbergensis represents attributes of both species, it has therefore earned the classification as …

Forensic Signatures For Production Conditions Of Bacillus Thuringiensis (Str. Hd1) Spore Cultures, Dani Jabado, Cristina Stanciu, Christopher Ehrhardt

UROP Posters

Chemical signatures that can indicate growth medium recipes or other key aspects of the production conditions are an important goal for forensic and biodefense agencies. In this study, Fatty Acid Methyl Ester (FAME) profiles were analyzed from Bacillus thuringiensis spores grown five different published medium recipes. B. thuringiensis was chosen due to its biochemical, structural, and genetic similarity to B. anthracis, a Biosafety Level III select agent and the organisms used in the Amerithrax attacks in 2001. The relative abundance of 13 different fatty acid biomarkers, spanning four structure classes, was compared across all spore samples. Differences in the …

Invasive Species In An Urban Flora: History And Current Status In Indianapolis, Indiana, Rebecca W. Dolan

Scholarship and Professional Work - LAS

Invasive plant species are widely appreciated to cause significant ecologic and economic damage in agricultural fields and in natural areas. The presence and impact of invasives in cities is less well documented. This paper characterizes invasive plants in Indianapolis, Indiana. Based on historical records and contemporary accounts, 69 of the 120 species on the official Indiana state list are reported for the city. Most of these plants are native to Asia or Eurasia, with escape from cultivation as the most common mode of introduction. Most have been in the flora of Indianapolis for some time. Eighty percent of Indianapolis’ invasive …

A Century Of Morphological Variation In Cyprinidae Fishes, Stephen J. Jacquemin, Mark Pyron

Biological Sciences Faculty Publications

Background

Aquatic habitats have been altered over the past century due to a variety of anthropogenic influences. Ecomorphology is an area of aquatic ecology that can both directly and indirectly assess the effects of habitat alterations on organisms. However, few studies have explored long term trends in morphological variation. Long term changes in morphology can potentially impact niche and ultimately contribute to organismal success and the ecosystem. Therefore, in this study we assessed long term morphological variation with body size, sex, time, and hydrology using museum collections of five species of Cyprinidae (Minnows) from lentic and lotic systems over the …

Pedagogy For The Pedosphere, Loren B. Byrne, Rachel K. Thiet, V Bala Chaudhary

Arts & Sciences Faculty Publications

No abstract provided.

Marked Variation Between Winter And Spring Gut Microbiota In Freeranging Tibetan Macaques (Macaca Thibetana), Binghua Sun, Xi Wang, Sofi Bernstein, Michael A. Huffman, Dong-Po Xia, Zhiyuan Gu, Rui Chen, Lori K. Sheeran, R. Steven Wagner, Jinhua Li

Anthropology and Museum Studies Faculty Scholarship

Variation in the availability and distribution of food resources is a strong selective pressure on wild primates. We explored variation in Tibetan macaque gut microbiota composition during winter and spring seasons. Our results showed that gut microbial composition and diversity varied by season. In winter, the genus Succinivibrio, which promotes the digestion of cellulose and hemicellulose, was significantly increased. In spring, the abundance of the genus Prevotella, which is associated with digestion of carbohydrates and simple sugars, was significantly increased. PICRUSt analysis revealed that the predicted metagenomes related to the glycan biosynthesis and metabolic pathway was significantly increased in winter …

Molecular Cytogenetic Identification Of A Novel Hexaploid Wheat-Thinopyrum Intermedium Partial Amphiploid With High Protein Content, Mariyana Georgieva, Klaudia Kruppa, Nedyalka Tyankova, Marta Molnar Lang

Turkish Journal of Biology

Genomic in situ hybridization and fluorescence in situ hybridization were used to define the cytogenetic constitution of the intergeneric introgression line 29(1-57) obtained from the wheat × Thinopyrum intermedium (wheatgrass) cross. This line is a high-protein line resistant to leaf rust, yellow rust, and powdery mildew under field conditions and has 42 chromosomes. GISH analysis using a total genomic DNA probe from Thinopyrum intermedium resulted in the identification of 14 chromosomes of wheatgrass origin. The sequential GISH patterns obtained using St-genomic and J-genomic DNA as probes and ABD-genomic DNA from wheat as a blocker led to a better determination of …

The Relative Influences Of Climate And Competition On Tree Growth Along Montane Ecotones In The Rocky Mountains, Paige E. Copenhaver-Parry, Ellie Cannon

Faculty Publications - Department of Biological & Molecular Science

Distribution shifts of tree species are likely to be highly dependent upon population performance at distribution edges. Understanding the drivers of aspects of performance, such as growth, at distribution edges is thus crucial to accurately predicting responses of tree species to climate change. Here, we use a Bayesian model and sensitivity analysis to partition the effects of climate and crowding, as a metric of competition, on radial growth of three dominant conifer species along montane ecotones in the Rocky Mountains. These ecotones represent upper and lower distribution edges of two species, and span the distribution interior of the third species. …

Flight Mechanics And Control Of Escape Manoeuvres In Hummingbirds. Ii. Aerodynamic Force Production, Flight Control And Performance Limitations, Bo Cheng, Bret W. Tobalske, Donald R. Powers, Tyson L. Hedrick, Yi Wang, Susan M. Wethington, George T.C. Chiu, Xinyan Deng

Faculty Publications - Department of Biological & Molecular Science

The superior manoeuvrability of hummingbirds emerges from complex interactions of specialized neural and physiological processes with the unique flight dynamics of flapping wings. Escape manoeuvring is an ecologically relevant, natural behaviour of hummingbirds, from which we can gain understanding into the functional limits of vertebrate locomotor capacity. Here, we extend our kinematic analysis of escape manoeuvres from a companion paper to assess two potential limiting factors of the manoeuvring performance of hummingbirds: (1) muscle mechanical power output and (2) delays in the neural sensing and control system. We focused on the magnificent hummingbird (Eugenes fulgens, 7.8 g) and the black-chinned …

Drift And Activity Responses Of Black Flies (Simulium Vittatum) In The Field: Influences Of Tactile And Injury-Released Stimuli From Simulated Predation, Aaron M. Sullivan, Elyse C. Johnson

Faculty Publications - Department of Biological & Molecular Science

Prey must manage threat from many types of predators; therefore, selection should favor sensory mechanisms that allow the refinement of defensive behavior. To assess responses to tactile and chemical stimuli related to predation, we observed drift and activity of larval black flies ( Simulium vittatum) to simulated predator contact intended to imitate benthic and drift predators as well as a combination of tactile and injury-released stimuli. In the field, larvae responded to tactile stimuli applied to the head with a higher frequency of curling and posterior abdominal segments with a higher frequency of drifting. Additionally, chemical cues from injured conspecifics …