Biology Commons^™

Molecular Characterization Of Diverse Wheat Germplasm For Puroindolineproteins And Their Antimicrobial Activity, Vishal Chugh, Kirandeep Kaur, Dharmendra Singh, Vinod Kumar, Harinderjit Kaur, Harcharan Singh Dhaliwal

Turkish Journal of Biology

Thirty different wheat genotypes, including landraces, cultivars, and related wild species, were analyzed for puroindoline genes and proteins. Full-length Pina and Pinb genes were amplified using gene-specific markers where 13 genotypes amplified both genes, while 17 genotypes had either one or none of the puroindoline genes. None of the puroindoline genes were detected in any of the Triticum durum cultivars. Genotypes with both puroindoline genes had a soft grain texture, while other genotypes had hard grains. Related nonprogenitor species with A, C, M, U, and S genomes also showed the presence of either one or both the puroindoline genes, indicating …

Speeding Up Ecological And Evolutionary Computations In R; Essentials Of High Performance Computing For Biologists, Marco D. Visser, Sean M. Mcmahon, Cory Merow, Philip M. Dixon, Sydne Record, Eelke Jongejans

Biology Faculty Research and Scholarship

Computation has become a critical component of research in biology. A risk has emerged that computational and programming challenges may limit research scope, depth, and quality. We review various solutions to common computational efficiency problems in ecological and evolutionary research. Our review pulls together material that is currently scattered across many sources and emphasizes those techniques that are especially effective for typical ecological and environmental problems. We demonstrate how straightforward it can be to write efficient code and implement techniques such as profiling or parallel computing. We supply a newly developed R package (aprof) that helps to identify computational bottlenecks …

2015 Annual Report Department Of Biological Sciences, Ronald L. Frank, Chen Hou, Yue-Wern Huang, Adam R. Martin, Melanie R. Mormile, Dev Niyogi, Julie A. Semon, Katie S. Shannon, Matthew S. Thimgan, David J. Westenberg, Terry Wilson

Biological Sciences Faculty Research & Creative Works

No abstract provided.

Warm Microhabitats Drive Both Increased Respiration And Growth Rates Of Intertidal Consumers, Luke P. Miller, Bengt J. Allen, Felicia A. King, Daisy R. Chilin, Vanessa M. Reynoso, Mark W. Denny

Faculty Publications, Biological Sciences

Rocky intertidal organisms are often exposed to broadly fluctuating temperatures as the tides rise and fall. Many mobile consumers living on the shore are immobile during low tide, and can be exposed to high temperatures on calm, warm days. Rising body temperatures can raise metabolic rates, induce stress responses, and potentially affect growth and survival, but the effects may differ among species with different microhabitat preferences. We measured aerial and aquatic respiration rates of 4 species of Lottia limpets from central California, and estimated critical thermal maxima. In a variety of microhabitats in the field, we tracked body temperatures and …

Ua94/6/15 Student / Alumni Personal Papers Wku Dorris Hutchinson, Wku Archives

WKU Archives Collection Inventories

Correspondence and publications created by and about the Dorris Hutchison during her time at Sloan-Kettering Institute.

The Coastal Monitor: Vol. 1, No. 1, John Tanacredi Ph.D.

The Coastal Monitor

The Center for Environmental Research and Coastal Oceans Monitoring (CERCOM) is a scientific coastal research center and field station dedicated to exploring our global coastal environments and near-shore oceans. CERCOM is the field station support facility for all sciences at Molloy College and services the degree programs of Biology, Chemistry, and Environmental Studies, with special attention to a B.S. degree in Earth and Environmental Studies. Located at the West Sayville Boat Basin on the Great South Bay, CERCOM is a 2,500 sq. ft. field station estuarine/ marine science laboratory where environmental monitoring and analysis is conducted 365 days a year.

Biology 101 General Biology I Online Fall 2015, Leeanne Byers

Biology Courses

No abstract provided.

Biology 107 Introduction To Evolution Online Fall 2015, Bryan Krall

Biology Courses

No abstract provided.

Biology 106-051w Heredity And Society Online Fall 2015, Rosetta Dalton

Biology Courses

No abstract provided.

Biology 101-002 General Biology Fall 2015, Bryan Krall

Biology Courses

No abstract provided.

Biology 186-051w Heredity And Society Labonline, Rosetta Dalton

Biology Courses

No abstract provided.

Effects Of Urbanization On The Occurrence Of Batrachochytrium Dendrobatidis: Do Urban Environments Provide Refuge From The Amphibian Chytrid Fungus?, Daniel Saenz, Taylor L. Hall, Matthew Kwiatkowski

Faculty Publications

Batrachochytrium dendrobatidis (Bd) is a widespread pathogenic fungus that is known to cause the disease, chytridiomycosis, which can be lethal to many amphibians. We compared occurrence rates on spring peepers (Pseudacris crucifer) in urban and forested breeding sites in eastern Texas, USA. All study sites were at approximately the same latitude and altitude, and samples were collected at the same time of year to isolate differences in Bd infection rates between habitat types. We found significant differences (p<0.001) in the occurrence of Bd between habitats; with dramatically lower rates of occurrence at urban sites (19.5 %), compared to forested sites (62.9 …

Morphologic And Taxonomic Analysis Of The Weedy And Cultivated Amaranthus Hybridus Species Complex, Dinesh Adhikary, Donald B. Pratt

Faculty Publications

The hybridus species complex of the genus Amaranthus is a group of weedy and cultivated plants from the New World that are considered difficult to identify. Classification schemes have varied between a single species approach, Amaranthus hybridus s.l., and a five species approach that recognizes the widespread weedy A. hybridus s.s., the South American endemic A. quitensis, and the three cultivated taxa (A. hypochondriacus, A. cruentus, and A. caudatus) as distinct species. The goals of this study were to analyze patterns of floral variation within the species complex and to determine distinguishing morphological features of …

Fox Enrichment At Willow Park Zoo, Madeleine Petersen

Biology Posters

No abstract provided.

Four Single-Base Mismatches Within The 3'-Terminal Stem-Loop Are Critical For Replication Of The Genomic Rna Of Japanese Encephalitis Virus, Jordan Frank, Sang-Im Yun, Byung-Hak Song, Young-Min Lee

Biology Posters

No abstract provided.

Artemisia Tridentata Mesocosm: Annual Water Usage And Water Balance, Leticia L. Hoffmann, Michael C. Amacher

Biology Posters

No abstract provided.

Attractiveness Of Solitary Bee Nesting Cues To A Cleptoparasite, Samuel Malan, Theresa Pitts-Singer

Biology Posters

No abstract provided.

Diagnostic Doses And Times For Phlobotomus Papatasi And Lutzomyia Longipalpis Sandflies Using The Cdc Bottle Bioassay To Assess Insecticide Resistance, Joseph A. Creswell

Biology Posters

No abstract provided.

Working With Recreational Therapy, Emily Edwards

Biology Posters

No abstract provided.

Does Upper Extremity Training Influence Body Composition After Spinal Cord Injury?, Justin A. Fisher, Meredith A. Mcnelis, Ashraf S. Gorgey, David S. Dolbow, Lance L. Goetz

Biology Publications

Spinal cord injury (SCI) leads to serious body composition adaptations characterized by increasing whole body fat mass and decreased soft tissue lean mass (LM). These adaptations in body composition may lead to several cardio-metabolic disorders that reduce the quality of life, increase patients’ and caregivers’ burden and eventually leads to mortality. Exercise, an appropriate dietary regimen, and an active lifestyle may alleviate several of the negative effects on body composition after a SCI. Today however, there is no established consensus on the recommended dose, frequency or type of exercise to ameliorate several of the body composition sequelae after an acute …

Evolutionary History Influences The Salinity Preference Of Bacterial Taxa In Wetland Soils, Ember Morrissey, Rima B. Franklin

Biology Publications

Salinity is a major driver of bacterial community composition across the globe. Despite growing recognition that different bacterial species are present or active at different salinities, the mechanisms by which salinity structures community composition remain unclear. We tested the hypothesis that these patterns reflect ecological coherence in the salinity preferences of phylogenetic groups using a reciprocal transplant experiment of fresh- and saltwater wetland soils. The salinity of both the origin and host environments affected community composition (16S rRNA gene sequences) and activity (CO2 and CH4 production, and extracellular enzyme activity). These changes in community composition and activity rates were …

Consequences Of Life History Switch Point Plasticity For Juvenile Morphology And Locomotion In The Túngara Frog, Julie Charbonnier, James R. Vonesh

Biology Publications

Many animals with complex life cycles can cope with environmental uncertainty by altering the timing of life history switch points through plasticity. Pond hydroperiod has important consequences for the fitness of aquatic organisms and many taxa alter the timing of life history switch points in response to habitat desiccation. For example, larval amphibians can metamorphose early to escape drying ponds. Such plasticity may induce variation in size and morphology of juveniles which can result in carry-over effects on jumping performance. To investigate the carry-over effects of metamorphic plasticity to pond drying, we studied the Túngara frog,Physalaemus pustulosus, a …

Immobilization And Phytotoxicity Reduction Of Heavy Metals In Serpentine Soil Using Biochar, I. Herath, P. Kumarathilaka, A. Navarantne, N. Rajakaruna, M. Vithanage

Biological Sciences

Purpose

Serpentine soils derived from ultramafic rocks release elevated concentrations of toxic heavy metals into the environment. Hence, crop plants cultivated in or adjacent to serpentine soil may experience reduced growth due to phytotoxicity as well as accumulate toxic heavy metals in edible tissues. We investigated the potential of biochar (BC), a waste byproduct of bioenergy industry in Sri Lanka, as a soil amendment to immobilize Ni, Cr, and Mn in serpentine soil and minimize their phytotoxicity.

Materials and methods

The BC used in this study was a waste byproduct obtained from a Dendro bioenergy industry in Sri Lanka. This …

Exploring The Association Between Morgellons Disease And Lyme Disease: Identification Of Borrelia Burgdorferi In Morgellons Disease Patients, Marianne J. Middelveen, Cheryl Bandoski, Jennie Burke, Eva Sapi, Katherine Filush, Yean Wang, Agustin Franco, Peter J. Mayne, Raphael B. Stricker

Biology and Environmental Science Faculty Publications

Morgellons disease (MD) is a complex skin disorder characterized by ulcerating lesions that have protruding or embedded filaments. Many clinicians refer to this condition as delusional parasitosis or delusional infestation and consider the filaments to be introduced textile fibers. In contrast, recent studies indicate that MD is a true somatic illness associated with tickborne infection, that the filaments are keratin and collagen in composition and that they result from proliferation and activation of keratinocytes and fibroblasts in the skin. Previously, spirochetes have been detected in the dermatological specimens from four MD patients, thus providing evidence of an infectious process. Methods …

Histone Deacetylase Inhibitory Activity Of Hydroxycapsaicin, A Synthetic Derivative Of Capsaicin, And Its Cytotoxic Effects Against Human Colon Cancer Cell Lines, Thanaset Senawong, Paweena Wongphakham, Thussanee Saiwichai, Chanokbhorn Phaosiri, Pakit Kumboonma

Turkish Journal of Biology

Capsaicin possesses cytotoxic/anticancer activity and shares some common structural features, including a benzene ring and a long hydrophobic carbon tail, with the histone deacetylase (HDAC) inhibitors trichostatin A and suberoylanilide hydroxamic acid. The aims of this study were to investigate HDAC inhibitory and cytotoxic activities of a synthetic derivative of capsaicin, hydroxycapsaicin (6-hydroxy-N-(4-hydroxy-3-methoxybenzyl)-8-methylnonenamide), in colon cancer cell lines. Hydroxycapsaicin inhibited HDAC activity in vitro (IC50 = 72 µM) much more effectively than the prototype capsaicin (IC50 > 13.1 mM) and also exhibited HDAC inhibitory activity in human cells (HeLa cells). MTT assay demonstrated that hydroxycapsaicin was less toxic than capsaicin against …

Eugenol Biologic Activity In Immunosuppressed Rat Females With Candida Albicans Genital Infection: Histocytological Changes, Romeo Teodor Cristina, Diana Obistioiu, Eugenia Dumitrescu, Ileana Nichita, Florin Muselin, Diana Brezovan, Mihai Sorin Cernea

Turkish Journal of Biology

From our prior studies concerning eugenol's biologic activity we observed the very good in vitro antifungal efficiency of this natural compound. Those positive results generated the need to supplement the available information with a comparative in vivo animal model. In this context, our current study was proposed to ascertain and compare the effects of eugenol with nystatin with a placebo control group (saline solution) by evaluating the cytohistological alterations in immunosuppressed Wistar female rats genitally infected with Candida albicans. The observed histological alterations were most apparent in the placebo group. Candidiasis affected the liver, ovaries, kidneys, and spleen of the …

Investigation Of The In Vivo Interaction Between Ss-Lactamase And Its Inhibitor Protein, Ni̇lay Büdeyri̇ Gökgöz, Si̇may Yalaz, Naze Gül Avci, Gi̇zem Buldum, Eli̇f Özkirimli Ölmez, Berna Sariyar Akbulut

Turkish Journal of Biology

The affinity of ß-lactamase inhibitory protein (BLIP) for TEM-1 ß-lactamase has raised hopes in the challenge of protein-based inhibitor discovery for ß-lactamase-mediated antibiotic resistance. Currently, the effect of the formation of the ß-lactamase:BLIP complex in vivo in ß-lactam resistant bacteria is an open question. The scarcity of information to the extent to which BLIP can impair ß-lactamase activity inside cells has urged us to assess the in vivo efficacy of BLIP as a potent ß-lactamase inhibitor. To this end, ß-lactamase and BLIP were coexpressed in Escherichia coli. Simultaneous expression of ß-lactamase and BLIP and the formation of the TEM-1 ß-lactamase:BLIP …

Corbicula Fluminea Food Web Ecology: An Experimental Transplant Approach In A Karst Riverine System, Autumn Smith

Mahurin Honors College Capstone Experience/Thesis Projects

The Asiatic clam Corbicula fluminea is a filter-feeding habitat generalist. Carbon isotopic composition (δ13C) of C. fluminea body tissue was compared between reaches of Kentucky’s upper Green River that differed in Cladophora growth. Corbicula fluminea from an upstream reach with little Cladophora was translocated to a downstream reach with high Cladophora levels. Individuals from both reaches were placed in mussel silos in the same downstream reach in autumn 2012 and again in 2013 for 77 and 119 days, respectively. Flow during 2012 consisted of no high flow events until late autumn. Flow patterns in 2013 were consistently higher and more …

Arabian Peninsula Report, Neil Cumberlidge

Book Sections/Chapters

No abstract provided.

Biological Impact Of Feeding Rats With A Genetically Modified-Based Diet, Hanaa Oraby, Mahrousa Kandil, Nermeen Shaffie, Inas Ghaly

Turkish Journal of Biology

This work was conducted in the context of postmarketing biosafety assessment of genetically modified products. It presents a systematic approach based on a chronic toxicity study on Wistar albino rats, with a range of combined parameters including biochemical, histopathological, and cytogenetic to evaluate the negative impact of a genetically modified (GM) diet on animal health. Histopathological and biochemical analysis procedures were performed in the liver, kidney, and testis. Cytogenetic analysis was evaluated in germ cells and the liver. The results revealed that the laboratory diet used in our investigation was proved experimentally, using the PCR assay, to contain genetically modified …