Biology Commons^™

The Role Of Sirtuin Inhibitors On The Proteomic Responses Of The Mussels Mytilus Galloprovincialis And Mytilus Trossulus To Menadione Induced Oxidative Stress, Hayley C. Chilton

Master's Theses

Global climate change imposes physiological constraints on marine ecosystems that can alter the distribution of intertidal organisms. In one such instance, the native cold-adapted mussel Mytilus trossulus is being replaced along its southern range by the invasive warm-adapted Mytilus galloprovincialis. These blue mussels occur throughout rocky intertidal zones where they are subjected to greatly varying environmental conditions known to induce oxidative stress. We hypothesize that while under acute stress, related Mytilus congeners undergo a shift in redox potential from NADH-fueled respiratory pathways to pathways producing NADPH as a way to decrease the production of reactive oxygen species (ROS) and …

Modeling The Transmission Dynamics Of Typhoid In Malaria Endemic Settings, Steady Mushayabasa, Claver P. Bhunu, Ngoni A. Mhlanga

Applications and Applied Mathematics: An International Journal (AAM)

Typhoid and malaria co-infection is a major public health problem in many developing countries. In this paper, a deterministic model for malaria and typhoid co-infection is proposed and analyzed. It has been established that the model exhibits a backward bifurcation phenomenon. Overall, the study reveals that a typhoid outbreak in malaria endemic settings may lead to higher cumulative cases of dually-infected individuals displaying clinical symptoms of both infections than singly-infected individuals displaying clinical symptoms of either malaria or typhoid.

Effect Of Toxic Metal On Root And Shoot Biomass Of A Plant A Mathematical Model, O. P. Misra, Preety Kalra

Applications and Applied Mathematics: An International Journal (AAM)

In this paper, a mathematical model is proposed to study the impact of toxic metals on plant growth dynamics due to transfer of the toxic metal in plant tissues. In the model, it is assumed that the plant uptakes the metal from the soil through the roots and then it is transfered in the plant tissues and cells by transport mechanisms. It is observed experimently that when toxic (heavy) metals combines with the nutrient they form a complex compound due to which nutrient loses its inherent properties and the natural charaterstics of the nutrient are damaged. It is noticed that …

The Neotropical Genus Austrolebias: An Emerging Model Of Annual Killifishes, Nibia Berois, María J. Arezo, Rafael O. De Sá

Biology Faculty Publications

Annual fishes are found in both Africa and South America occupying ephemeral ponds that dried seasonally. Neotropical annual fishes are members of the family Rivulidae that consist of both annual and non-annual fishes. Annual species are characterized by a prolonged embryonic development and a relatively short adult life.

Males and females show striking sexual dimorphisms, complex courtship, and mating behaviors. The prolonged embryonic stage has several traits including embryos that are resistant to desiccation and undergo up to three reversible developmental arrests until hatching. These unique developmental adaptations are closely related to the annual fish life cycle and are the …

Probability Of Regenerating A Normal Limb After Bite Injury In The Mexican Axolotl (Ambystoma Mexicanum), Sierra Thompson, Laura Muzinic, Christopher Muzinic, Matthew L. Niemiller, S. Randal Voss

Biology Faculty Publications

Multiple factors are thought to cause limb abnormalities in amphibian populations by altering processes of limb development and regeneration. We examined adult and juvenile axolotls (Ambystoma mexicanum) in the Ambystoma Genetic Stock Center (AGSC) for limb and digit abnormalities to investigate the probability of normal regeneration after bite injury. We observed that 80% of larval salamanders show evidence of bite injury at the time of transition from group housing to solitary housing. Among 717 adult axolotls that were surveyed, which included solitary-housed males and group-housed females, approximately half presented abnormalities, including examples of extra or missing digits and …

Estimating Bacterial Diversity In Scirtothrips Dorsalis (Thysanoptera: Thripidae) Via Next Generation Sequencing, Aaron M. Dickey, Andrew J. Trease, Antonella Jara-Cavieres, Vivek Kumar, Matthew K. Christenson, Lakshmi-Prasad Potluri, J. Kent Morgan, Robert G. Shatters Jr., Cindy L. Mckenzie, Paul H. Davis, Lance S. Osborne

Biology Faculty Publications

The last 2 decades have produced a better understanding of insect-microbial associations and yielded some important opportunities for insect control. However, most of our knowledge comes from model systems. Thrips (Thysanoptera: Thripidae) have been understudied despite their global importance as invasive species, plant pests and disease vectors. Using a culture and primer independent next-generation sequencing and metagenomics pipeline, we surveyed the bacteria of the globally important pest, Scirtothrips dorsalis Hood. The most abundant bacterial phyla identified were Actinobacteria and Proteobacteria and the most abundant genera were Propionibacterium, Stenotrophomonas, and Pseudomonas. A total of 189 genera of bacteria were identified. The …

Factors Associated With Flammulated Owl And Northern Saw-Whet Owl Occupancy In Southern Idaho, Micah N. Scholer, Matthias Leu, James R. Belthoff

Biology Faculty Publications and Presentations

Spatially explicit models depicting species occupancy offer a useful conservation tool for land managers. Using occurrence data collected in 2009 and 2010 from the Boise National Forest, Idaho, we developed distribution models for Flammulated Owls (Psiloscops flammeolus) and Northern Saw-whet Owls (Aegolius acadicus) to explore associations between habitat factors and owl occupancy. We then spatially applied these models in a Geographic Information System. We considered land cover and topographic variables at three spatial scales: 0.4-km, 1-km, or 3-km-radius plots centered on point-count locations (n  =  150) with resolution of land covers at 30 m. Flammulated …

Venom Yield, Regeneration, And Composition In The Centipede Scolopendra Polymorpha, Allen Michael Cooper

Loma Linda University Electronic Theses, Dissertations & Projects

In this dissertation, I investigated yield, regeneration, and composition of centipede venom. In the first of three empirical studies, I investigated how size influenced venom volume yield and protein concentration in Scolopendra polymorpha and S. subspinipes. I also examined additional potential influences on yield in S. polymorpha, including relative forcipule size, relative mass, geographic origin, sex, time in captivity, and milking history. Volume yield was positively linearly related to body length in both species; however, body length and protein concentration were uncorrelated. In S. polymorpha, yield was most influenced by body length, but was also positively associated …

Diet Of A Cryptic But Widespread Invader, The Oriental Weatherfish (Misgurnus Anguillicaudatus) In Idaho, Usa, Alexander N. Urquhart, Peter Koetsier

Biology Faculty Publications and Presentations

The oriental weatherfish (Misgurnus anguillicaudatus) is invasive to 13 U.S. states and at least 9 other countries. Although this cryptic fish species is widespread, very little is known regarding its ecology. We used baited minnow traps to collect 237 individuals from water bodies connected to the Boise River, Idaho. To determine the diet of the fish within this invasive population, we dissected and examined stomach contents of the sampled fish. Most of the stomachs (158 of 237) were empty, and 42 contained only the trap bait. However, 37 contained natural food items. Gravimetric analysis, frequency of occurrence, and …

Association Between Symptomatic Vulvovaginal Candidiasis And Hiv Rna Levels In Plasma And Genital Secretions Among Women On Haart, Teke Apalata, William H. Carr, Benjamin Longo-Mbenza, Willem A. Sturm, P. Moodley

Publications and Research

Background. Genital tract (GT) inflammation plays a major role in HIV transmission. We aimed to determine the association between symptomatic vulvovaginal candidiasis (VVC) and HIV RNA levels in plasma and GTs of HIV-infected women on highly active antiretroviral therapy (HAART).

Method. Women with VVC on HAART were recruited from a primary healthcare clinic in KwaZulu-Natal Province, South Africa, between June 2011 and December 2011. VVC was diagnosed clinically, supported by Gram staining and culture of genital secretions. HIV RNA load was determined by reverse transcription polymerase chain reaction. CD4+ counts were obtained from patients’ medical records.

Results. Plasma HIV RNA …

Relative Roles Of Host Exposure And Parasite Establishment In Producing Patterns Of Infection Using Eptesicus Fuscus (Chiroptera: Vespertilionidae) And Its Helminths As A Model System, Elizabeth Warburton

Dissertations

Parasite abundance and community structure could vary depending on conditions that are both extrinsic and intrinsic to the host. Variation in parasite burden, resulting from heterogeneous exposure to parasites or heterogeneous establishment of parasites in the host, often drives transmission dynamics. Changes in parasite community structure influence parasite species diversity and thus, diversity of infection within a single host or entire host population. I sought to quantify relative roles of exposure and establishment in producing patterns of infection using bats, Eptesicus fuscus, and their helminths. I utilized subsets of data from bats captured in 16 colonies from three states …

Dynamics Of Phytoplankton, Zooplankton And Fishery Resource Model, B. Dubey, Atasi Patra, R. K. Upadhyay

Applications and Applied Mathematics: An International Journal (AAM)

In this paper, a new mathematical model has been proposed and analyzed to study the interaction of phytoplankton- zooplankton-fish population in an aquatic environment with Holloing’s types II, III and IV functional responses. It is assumed that the growth rate of phytoplankton depends upon the constant level of nutrient and the fish population is harvested according to CPUE (catch per unit effort) hypothesis. Biological and bionomical equilibrium of the system has been investigated. Using Pontryagin’s Maximum Principal, the optimal harvesting policy is discussed. Chaotic nature and bifurcation analysis of the model system for a control parameter have been observed through …

Optimization Of Growth Parameters For Algal Regrowth Potential Experiments, Chadwick D. Boggess

Master's Theses

Water cost is one of the key deterrents in making algal biofuels a feasible alternative to traditional petroleum fuels. Research into recycling of algal media was conducted in a laboratory setting at the California Polytechnic State University in San Luis Obispo. A growth assay was created to allow for algal cultures, specifically Ward’s Chlorella sp., to proliferate in sealed culture vessels. Bold’s Basal Medium (BBM) was selected as the media due to its extensive use with freshwater algal strains. However, this medium can limit algal growth through nutrient limitation and it became necessary to augment the original recipe. 50mM …

Privatization And Property In Biology, Joan E. Strassmann, David C. Queller

Biology Faculty Research

Organisms evolve to control, preserve, protect and invest in their own bodies. When they do likewise with external resources they privatize those resources and convert them into their own property. Property is a neglected topic in biology, although examples include territories, domiciles and nest structures, food caching, mate guarding, and the resources and partners in mutualisms. Property is important because it represents a solution to the tragedy of the commons; to the extent that an individual exerts long-term control of its property, it can use it prudently, and even invest in it. Resources most worth privatizing are often high in …

Genetic Explanations: Sense And Nonsense, Garland E. Allen

Biology Faculty Research

Book review of Sheldon Krimsky; Jeremy Gruber (Editors). Genetic Explanations: Sense and Nonsense. xi + 368 pp., index. Cambridge, Mass.: Harvard University Press, 2013. $45 (cloth).

Growth Patterns Of Ethnic Groups In Bexar County With Dynamic Leslie Models, Judith Arriaza, Zhanbo Yang, Flor De María García-Wukovits

Applications and Applied Mathematics: An International Journal (AAM)

The purpose of this study is to modify the Leslie model with a dynamic matrix for better population projections in Bexar County, where UIW is located and the authors reside. A dynamic matrix was used to improve the static Leslie model used in the previous study since human population growth is dynamic and complex. The matrix was constructed with functions that modeled the birth rates and survival rates. This allowed the rates to change from year to year. The population projections using the dynamic matrix were compared to the real population data and the static matrix. The researcher concluded that …

Investigation Of Chromosome Size Effect On The Rate Of Crossovers In The Meiotic Yeast Saccharomyces Cerevisiae, Lanie Maria Galland

Master's Theses

Meiosis is a specialized type of cell division characterized by a single round of DNA replication and two rounds of chromosome segregation, ultimately resulting in four haploid cells. During meiosis I, chromosomes align and reciprocal recombination results in the formation of a crossover, creating the tension required to properly segregate homologs during the first round of meiosis.

Two mechanisms involved in regulating the occurrence of crossing over are assurance and interference. Crossover assurance describes the phenomenon that at least one crossover will form between each pair of homologous chromosomes during prophase I. Crossover interference, on the other hand, describes the …

Identification Of Novel Small Rnas And Characterization Of The 6s Rna Of Coxiella Burnetii, Indu Warrier, Linda D. Hicks, James M. Battisti, Rahul Raghavan, Michael F. Minnick

Biology Faculty Publications and Presentations

Coxiella burnetii, an obligate intracellular bacterial pathogen that causes Q fever, undergoes a biphasic developmental cycle that alternates between a metabolically-active large cell variant (LCV) and a dormant small cell variant (SCV). As such, the bacterium undoubtedly employs complex modes of regulating its lifecycle, metabolism and pathogenesis. Small RNAs (sRNAs) have been shown to play important regulatory roles in controlling metabolism and virulence in several pathogenic bacteria. We hypothesize that sRNAs are involved in regulating growth and development of C. burnetii and its infection of host cells. To address the hypothesis and identify potential sRNAs, we subjected total RNA isolated …

Photosynthetic Thermal Tolerance And Recovery To Short Duration Temperature Stress In Desert And Montane Plants: A Comparative Study, David William Gallagher

Master's Theses

• Climate change models predict an increase in frequency and amplitude of extreme weather events, including heat waves. To better predict how the composition and distribution of plant assemblages might respond to these changes in temperature, it is important to understand how species currently respond to these extremes. Photosynthetic thermal tolerance (T₂₅)and photosynthetic recovery (RT₂₅) were quantified in 27 species. We also studied the relationships between T₂₅, RT₂₅ and leaf mass per area (LMA). Leaf temperature was also monitored in the field.
• Leaves used in this study were collected from two distinct …

Insect Visitation Of Peduncular And Petiolar Extrafloral Nectar Glands On Castor Bean (Ricinus Communis L.) Plants In Southern California, Victor D. Carmona-Galindo, Taylor Waters, David Chirikian

Biology Faculty Works

Castor bean (Ricinus communis L.) is a myrmecophytic plant species with specialized extrafloral nectar (EFN) glands that serve to attract predatory insects, which in return defend plant-tissues against herbivores. The EFN glands on castor bean plants are located along the leaf petioles as well as on the peduncles of its imperfect (unisexual) flowers. This field-project evaluates the richness, diversity, and species assemblage of insects visiting EFN glands located on (female and male) flower peduncles and leaf petioles on castor bean plants growing in a Southern California coastal landscape. We detected that EFN glands on female-flower peduncles were visited by …

Biological Surveys Of Selected Lower Grand River Streams: Ionia, Kent, Muskegon, And Ottawa Counties, Michigan, August-September 2014, Michigan Department Of Environmental Quality Water Resources Division

Faculty and Professional Research

The biologic integrity and physical habitat conditions of the lower Grand River (Hydrologic Unit Code (HUC) 04050006) and selected tributaries were surveyed during August and September 2014 by staff of the Surface Water Assessment Section (SWAS), Water Resources Division (WRD). The objectives of this study were to: 1. Evaluate the attainment status of the other indigenous aquatic life and wildlife (OIALW) designated use. 2. Identify and investigate effects of nonpoint sources (NPS) of pollution. 3. Satisfy monitoring requests submitted by internal and external customers.

Certain Adenylated Non-Coding Rnas, Including 5′ Leader Sequences Of Primary Microrna Transcripts, Accumulate In Mouse Cells Following Depletion Of The Rna Helicase Mtr4, Jane E. Dorweiler, Ting Ni, Jun Zhu, Stephen Munroe, James T. Anderson

Biological Sciences Faculty Research and Publications

RNA surveillance plays an important role in posttranscriptional regulation. Seminal work in this field has largely focused on yeast as a model system, whereas exploration of RNA surveillance in mammals is only recently begun. The increased transcriptional complexity of mammalian systems provides a wider array of targets for RNA surveillance, and, while many questions remain unanswered, emerging data suggest the nuclear RNA surveillance machinery exhibits increased complexity as well. We have used a small interfering RNA in mouse N2A cells to target the homolog of a yeast protein that functions in RNA surveillance (Mtr4p). We used high-throughput sequencing of polyadenylated …

Characterization Of Winter Microbial Communities In The Purple Pitcher Plant (Sarracenia Purpurea), Reid Jeffrey Tornquist

Master's Theses and Doctoral Dissertations

Carnivorous pitcher plants trap insects in cone-shaped leaves and digest them to gain vital nutrients. For digestion to occur, plants in the genus Sarracenia require mutualistic microorganisms living in their leaves. Few studies have examined how these communities change over time. This study specifically examines the bacterial composition in the most widely distributed species, Sarracenia purpurea, in the winter. The leaves of this plant species live for several years, and it is unknown whether microbes overwinter in pitcher fluid or if community structure must be reestablished each spring. This study aims to characterize the winter microbiome in two population …

Range Extension Of The Macroalgae Anadyomene Stellata (Wulf. In Jacquin) C. Agardh And Re-Appearance Of Caulerpa Sertularioides (S. G. Gmel.) M. Howe In The Lower Laguna Madre, Texas, Hudson R. Deyoe, Joseph L. Kowalski

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

We report one new species of macroalgae, Anadyomene stellata, for the Lower Laguna Madre of Texas, and range extensions that have occurred in the past 16 years for this and four other green algae. Anadyomene stellata occurs only as an epiphyte on the red macroalgae, Digenia simplex. Caulerpa sertularioides has not been seen in the Lower Laguna Madre since 1962. It has either been present in cryptic habitats for 50 years near the Lower Laguna Madre or has recently expanded its range again into the Lower Laguna Madre. Ecological consideration of the presence of these species is discussed.

New Frontiers For The Nfil3 Bzip Transcription Factor In Cancer, Metabolism And Beyond, Megan Keniry, Robert K. Dearth, Michael W. Persans, Ramon Parsons

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

The bZIP transcription factor NFIL3 (Nuclear factor Interleukin 3 regulated, also known as E4 binding protein 4, E4BP4) regulates diverse biological processes from circadian rhythm to cellular viability. Recently, a host of novel roles have been identified for NFIL3 in immunological signal transduction, cancer, aging and metabolism. Elucidating the signaling pathways that are impacted by NFIL3 and the regulatory mechanisms that it targets, inhibits or activates will be critical for developing a clearer picture of its physiological roles in disease and normal processes. This review will discuss the recent advances and emerging issues regarding NFIL3-mediated transcriptional regulation of CEBPb and …

Roles Of Seed Dispersal And Environmental Filters In Establishment Of The Dominant Shrubs: Morella Cerifera And M. Pensylvanica, On An Atlantic Barrier Island, Benjamin Dows

Theses and Dissertations

Patterns of the expansion of woody cover into grasslands on barrier islands of the Virginia coast were investigated. Seed dispersal of the dominant shrub Morella spp., was sampled deploying seed traps (n = 82) throughout a landscape under shrub encroachment pressure on Hog Island, VA. Traps were placed underneath: fruiting Morella, non-fruiting Morella, co-occurring species (Iva frutescens and Baccharis halimifolia) and in grass land, (no shrub cover). Environmental filters that act upon dispersed seeds and subsequently determine establishment patterns were also investigated. Dispersal distribution throughout the encroachment zone was leptokurtic and dispersal among cover types suggest co-occurring shrub species facilitate …

A Heterogenous Thermal Environment Enables Remarkable Behavioral Thermoregulation In Uta Stansburiana, Maria Goller, Franz Goller, Susannah S. French

Biology Faculty Publications

Ectotherms can attain preferred body temperatures by selecting specific temperature microhabitats within a varied thermal environment. The side-blotched lizard, Uta stansburiana may employ microhabitat selection to thermoregulate behaviorally. It is unknown to what degree habitat structural complexity provides thermal microhabitats for thermoregulation. Thermal microhabitat structure, lizard temperature, and substrate preference were simultaneously evaluated using thermal imaging. A broad range of microhabitat temperatures was available (mean range of 11°C within 1–2 m2) while mean lizard temperature was between 36°C and 38°C. Lizards selected sites that differed significantly from the mean environmental temperature, indicating behavioral thermoregulation, and maintained a temperature significantly above …

Identification Of Potential Fish Hosts From Wild Populations Of State-Threatened East Texas Freshwater Mussels Using A Molecular Identification Dataset, Nathaniel T. Marshall

Biology Theses

Six species of freshwater mussel are of conservation concern throughout their range in East Texas, (Texas pigtoe (Fusconaia askewi), triangle pigtoe (Fusconaia lananensis), southern hickorynut (Obovaria jacksoniana), sandbank pocketbook (Lampsilis satura), Louisiana pigtoe (Pleurobema riddellii), and Texas heelsplitter (Potamilus amphichaenus)). These species warranted listing in Texas due, in part, to their restricted distributions and low abundances. These mussels, like most unionids, exhibit an unusual life cycle, unique to Unionidae, in which their larvae, called glochidia, are obligate ectoparasites on fish. Knowledge of host fish species is severally lacking for many mussels, as many hosts are unknown or have not been …

Temporal Variations In The Abundance And Composition Of Biofilm Communities Colonizing Drinking Water Distribution Pipes, John J. Kelly, Nicole Minalt, Alessandro Culotti, Marsha Pryor, Aaron Packman

Biology: Faculty Publications and Other Works

Pipes that transport drinking water through municipal drinking water distribution systems (DWDS) are challenging habitats for microorganisms. Distribution networks are dark, oligotrophic and contain disinfectants; yet microbes frequently form biofilms attached to interior surfaces of DWDS pipes. Relatively little is known about the species composition and ecology of these biofilms due to challenges associated with sample acquisition from actual DWDS. We report the analysis of biofilms from five pipe samples collected from the same region of a DWDS in Florida, USA, over an 18 month period between February 2011 and August 2012. The bacterial abundance and composition of biofilm communities …

Octopamine Neuromodulation Regulates Gr32a-Linked Aggression And Courtship Pathways In Drosophila Males, Jonathan C. Andrews, Maria Paz Fernàndez, Qin Yu, Gregory Patrick Leary, Adelaine K. W. Leung, Michael P. Kavanaugh, Edward A. Kravitz, Sarah J. Certel

Biological Sciences Faculty Publications

Chemosensory pheromonal information regulates aggression and reproduction in many species, but how pheromonal signals are transduced to reliably produce behavior is not well understood. Here we demonstrate that the pheromonal signals detected by Gr32a-expressing chemosensory neurons to enhance male aggression are filtered through octopamine (OA, invertebrate equivalent of norepinephrine) neurons. Using behavioral assays, we find males lacking both octopamine and Gr32a gustatory receptors exhibit parallel delays in the onset of aggression and reductions in aggression. Physiological and anatomical experiments identify Gr32a to octopamine neuron synaptic and functional connections in the suboesophageal ganglion. Refining the Gr32a-expressing population indicates that mouth Gr32a …