Biology Commons^™

Development And Testing Of A Rapid Multiplex Assay For The Identification Of Biological Stains, Kevin M. Legg

Electronic Theses and Dissertations

While DNA profiling makes it possible to individualize biological stains, the identification of the stain itself can present forensic serologists with a significant challenge. Current antibody- and enzyme activity-based assays used by forensic practitioners for biological stain identification yield only presumptive results. Positive results with non-target body fluids or cross-reactivity with non-human sources has also been well documented. Some tests can consume unacceptable quantities of precious evidence while for some body fluids (vaginal fluid and menstrual blood) there are simply no available tests at all.

This research presented here aims to develop and rigorously test a fast, accurate, and sensitive …

Shark Bay Prawn Managed Fishery : Bycatch Action Plan : 2014 – 2019 : Version 1.0, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

Fisheries Management Paper No.266 - Exmouth Gulf Prawn Managed Fishery Bycatch Action Plan 2014-2019. Version 1.0, Department Of Fisheries, Western Australia

Fisheries Management Papers

Bycatch is described as the part of the catch which is returned to the sea (usually referred to as non-retained or discarded) either because it has no commercial value or because legislative requirements preclude it being retained. Thus, this Bycatch Action Plan (BAP) includes unmarketable finfish and invertebrate species, along with endangered, threatened and protected (ETP) species, such as marine mammals, reptiles and some elasmobranchs.

It is Government policy to minimise bycatch in all commercial fisheries. This BAP details a program of actions to address bycatch issues in the Exmouth Gulf Prawn Managed Fishery (EGPMF), in accordance with the EGPMF …

Phylogenetic Analysis Of Algal Symbionts Associated With Four North American Amphibian Egg Masses, Eunsoo Kim, Yuan Lin, Ryan R. Kerney, Lili Blumenberg, Cory Bishop

Biology Faculty Publications

Egg masses of the yellow-spotted salamander Ambystoma maculatum form an association with the green alga “Oophila amblystomatis” (Lambert ex Wille), which, in addition to growing within individual egg capsules, has recently been reported to invade embryonic tissues and cells. The binomial O. amblystomatis refers to the algae that occur in A. maculatum egg capsules, but it is unknown whether this population of symbionts constitutes one or several different algal taxa. Moreover, it is unknown whether egg masses across the geographic range of A. maculatum, or other amphibians, associate with one or multiple algal taxa. To address these …

The Phenology Of Ticks And The Effects Of Long-Term Prescribed Burning On Tick Population Dynamics In Southwestern Georgia And Northwestern Florida, Elizabeth R. Gleim, L. Mike Conner, Roy D. Berghaus, Michael L. Levin, Galina E. Zemtsova, Michael J. Yabsley

Environmental Studies / Environmental Science Faculty Scholarship

Some tick populations have increased dramatically in the past several decades leading to an increase in the incidence and emergence of tick-borne diseases. Management strategies that can effectively reduce tick populations while better understanding regional tick phenology is needed. One promising management strategy is prescribed burning. However, the efficacy of prescribed burning as a mechanism for tick control is unclear because past studies have provided conflicting data, likely due to a failure of some studies to simulate operational management scenarios and/or account for other predictors of tick abundance. Therefore, our study was conducted to increase knowledge of tick population dynamics …

Skin Graft Acceptance Rates In Xenopus Laevis, Madelyn Lee, Scott Espich, Erika Kischuk, Skyler Majors, Kevin Kinney

Annual Student Research Poster Session

No abstract provided.

Measuring Immune Responsiveness In Xenopus Laevis Using Phytohaemagglutanin (Pha), Kevin Kinney, Skyler Majors, Madelyn Lee, Scott Espich, Erika Kischuk

Annual Student Research Poster Session

Phytohaemagglutanin (PHA) is a red kidney bean extract that has been used to stimulate an immunological T cell response in a variety of animals. This procedure has become very popular method to analyze an individual animal’s ability to trigger an immunological response.(Brown 2014) PHA skin testing has been used in a variety of avian, mice, lizard, and amphibian species where it is injected into the muscle, skin, or webbing of an animal and then recording the amount of swelling before and after the injection.(Smits 1999) We are using the amphibian Xenopus laevis to test 1) their immune reaction under normal …

Eight Legged Encounters, Eileen A. Hebets

Eileen Hebets Publications

This program was funded in part by a National Science Foundation grant (DRL–1241482 to EAH). Material was developed in collaboration with Marie- Claire Chelini, Jessie Rose Storz, Cody Storz, and Malcolm Rosenthal. Steven Schwartz, Jason Stafstrom, Kathy French, Priscilla Grew, and Judy Diamond were all extremely helpful in grant writing, facilitating the first live event, and/or discussions. Pawl Tisdale (artist) was phenomenal to work with on all aspects of the project!

TABLE OF CONTENTS

CLASSIFICATION & TAXONOMY STATIONS
I. WHAT IS AN ARTHROPOD? page 4 a. The goal of this station is to introduce the audience to some basic information …

Hydrolyzed Tuna Meat By-Product Supplement For Juvenile Red Sea Bream, Pagrus Major, And Its Effect On Growth, Enzyme Activity, Plasma Parameters, And Apparent Nutrient Digestibility, Janice A. Ragaza, Roger Edward P. Mamauag, Shunsuke Koshio, Manabu Ishikawa, Saichiro Yokoyama

Biology Faculty Publications

A growth experiment was conducted on juvenile red sea bream, Pagrus major to investigate the effect of the inclusion in fish diets, of tuna meat by-product hydrolysate which was processed through enzymatic hydrolysis using a commercially available enzyme, derived from Bacillus subtilis. Six experimental diets were formulated in the experiment. Three diets contained 50, 150 and 250 g/kg of TPM-H (tuna meat by-product hydrolysate), and two diets with the unprocessed TPM (tuna meat by-product) at an inclusion level of 50 and 250 g/kg. A control diet was formulated without any addition of the test ingredients. Treatment diets were fed ad …

Hormone Whodunit: Clues For Solving The Case Of Intratumor Androgen Production., Karen E Knudsen

Department of Cancer Biology Faculty Papers

One of the key mechanisms by which prostate cancer cells evade hormone therapy is through intratumor testosterone production. New evidence points toward androstenedione as a potential precursor of intratumor androgen production and furthers nomination of AKR1C3 as a therapeutic target in advanced disease. Clin Cancer Res; 20(21); 5343-5. ©2014 AACR.

Development And Evaluation Of A Model For Secondary Evolution Educators’ Professional Development Needs, William L. Romine, Ellen Barnett, Patricia J. Friedrichsen, Aaron J. Sickel

Biological Sciences Faculty Publications

Background

Professional development (PD) efforts have improved acceptance and pedagogical practice related to the theory of evolution in high school biology teachers. However, these teachers express need for more PD related to evolution. It therefore becomes necessary to understand teachers’ PD needs prior to structuring PD efforts.

Methods

We formulated and validated a model to explain secondary teachers’ PD needs using data from a survey of 276 secondary biology teachers who reported teaching evolution.

Results

In addition to reliable subscales, we found that obstacles to teaching evolution, school and community support for evolution instruction, confidence in evolution instruction, and prior …

Genetic Dominance & Cellular Processes, Robert D. Seager

Faculty Work

In learning genetics, many students misunderstand and misinterpret what “dominance” means. Understanding is easier if students realize that dominance is not a mechanism, but rather a consequence of underlying cellular processes. For example, metabolic pathways are often little affected by changes in enzyme concentration. This means that enzyme-producing alleles usually show complete dominance. For genes producing nonenzymatic proteins such as collagen or hemoglobin, the amount of product matters, and dominance relationships are more complicated. Furthermore, with hemoglobin, dominance can change depending on what aspect of the phenotype is being studied and on the environmental conditions. X-linked genes are a special …

The Dilemma Of Foraging Herbivores: Dealing With Food And Fear, Clare Mcarthur, Peter B. Banks, Rudy Boonstra, Jennifer Sorensen Forbey

Biology Faculty Publications and Presentations

For foraging herbivores, both food quality and predation risk vary across the landscape. Animals should avoid low-quality food patches in favour of high-quality ones, and seek safe patches while avoiding risky ones. Herbivores often face the foraging dilemma, however, of choosing between high-quality food in risky places or low-quality food in safe places. Here, we explore how and why the interaction between food quality and predation risk affects foraging decisions of mammalian herbivores, focusing on browsers confronting plant toxins in a landscape of fear. We draw together themes of plant–herbivore and predator–prey interactions, and the roles of animal ecophysiology, behaviour …

Osr1 Is Required For Podocyte Development Downstream Of Wt1a, Ritu Tomar, Sudha P. Mudumana, Narendra Pathak, Neil A. Hukriede, Iain A. Drummond

Neuroscience: Faculty Publications

Odd-skipped related 1 (Osr1) encodes a zinc finger transcription factor required for kidney development. Osr1 deficiency in mice results in metanephric kidney agenesis, whereas knockdown or mutation studies in zebrafish revealed that pronephric nephrons require osr1 for proximal tubule and podocyte development. osr1-deficient pronephric podocyte progenitors express the Wilms' tumor suppressor wt1a but do not undergo glomerular morphogenesis or express the foot process junctional markers nephrin and podocin. The function of osr1 in podocyte differentiation remains unclear, however. Here, we found by double fluorescence in situ hybridization that podocyte progenitors coexpress osr1 and wt1a. Knockdown of wt1a disrupted podocyte differentiation …

Effect Of Grain, Region, And Human Influence On Higher Taxonomic Surrogacy, Frances Owen

Master's Theses or Doctor of Nursing Practice

Surrogacy is a common tool within conservation and can be useful when scientists lack detailed knowledge of a system. Higher taxonomic surrogacy is appealing because it can save time and money. However, this technique might vary in effectiveness depending on the taxonomic level, spatial grain, region, and impact by humans. In this thesis I addressed some of the common concerns with higher taxonomic surrogacy using Breeding Bird Atlas data from six states (Colorado, Florida, Michigan, New York, Pennsylvania, and Washington). I compared the coefficients (slopes) of my models rather than the R2 values relied on by other higher taxonomic surrogacy …

Age, Growth, And Simulation Modeling To Characterize Fish Populations At Two Reservoirs In South-Central Kansas, Brian Serpan

Master's Theses or Doctor of Nursing Practice

Several fish populations in Kansas are heavily exploited. To obtain insight into the response of fish populations to management actions, fisheries biologists must obtain as much information as possible with limited resources. To address these challenges, biologists often use age and growth information to understand the age structure of the populations, estimate recruitment and mortality, and gain insight into environmental and genetic factors influencing growth. In addition, age and growth data are used to generate yield-per-recruit models, which allow biologists to extrapolate population trends and make broad predictions about population responses to different management actions. Cheney and El Dorado reservoirs …

Intercellular Cooperation And Competition In Brain Cancers: Lessons From Drosophila And Human Studies, Indrayani Waghmare, Austin Roebke, Mutsuko Minata, Madhuri Kango-Singh, Ichiro Nakano

Biology Faculty Publications

Glioblastoma (GBM) is a primary brain cancer with an extremely poor prognosis. GBM tumors contain heterogeneous cellular components, including a small subpopulation of tumor cells termed glioma stem cells (GSCs). GSCs are characterized as chemotherapy- and radiotherapy-resistant cells with prominent tumorigenic ability. Studies in Drosophila cancer models demonstrated that interclonal cooperation and signaling from apoptotic clones provokes aggressive growth of neighboring tumorigenic clones, via compensatory proliferation or apoptosis induced proliferation. Mechanistically, these aggressive tumors depend on activation of Jun-N-terminal kinase (upstream of c-JUN), and Drosophila Wnt (Wg) in the apoptotic clones. Consistent with these nonmammalian studies, data from several mammalian …

Publication Trends In Model Organism Research, Michael Dietrich, Rachel Ankeny, Patrick Chen

Dartmouth Scholarship

In 1990, the National Institutes of Health (NIH) gave some organisms special status as designated model organisms. This article documents publication trends for these NIH-designated model organisms over the past 40 years. We find that being designated a model organism by the NIH does not guarantee an increasing publication trend. An analysis of model and nonmodel organisms included in GENETICS since 1960 does reveal a sharp decline in the number of publications using nonmodel organisms yet no decline in the overall species diversity. We suggest that organisms with successful publication records tend to share critical characteristics, such as being well …

Lianas In Gaps Reduce Carbon Accumulation In A Tropical Forest, Stefan A. Schnitzer, Geertje M. F. Van Der Heijden, Joseph Mascaro, Walter P. Carson

Biological Sciences Faculty Research and Publications

Treefall gaps are the “engines of regeneration” in tropical forests and are loci of high tree recruitment, growth, and carbon accumulation. Gaps, however, are also sites of intense competition between lianas and trees, whereby lianas can dramatically reduce tree carbon uptake and accumulation. Because lianas have relatively low biomass, they may displace far more biomass than they contribute, a hypothesis that has never been tested with the appropriate experiments. We tested this hypothesis with an 8‐yr liana removal experiment in central Panama. After 8 years, mean tree biomass accumulation was 180% greater in liana‐free treefall gaps compared to control gaps. …

Study The Quality Of Groundwater Of Al-Zoroup Area In Mahdah State, The Sultanate Of Oman, Fahad Khalifa Rashid Al-Shidi

Theses

The groundwater is the most important source of water in the Sultanate of Oman. Accordingly, the Oman Government has paid great attention commensurate with the importance of water resource in terms of their sources, quality, and ways to rationalize consumption to remain under the term of sustainability and validity of present and future generations. This study was conducted in Al Buraymi at Mahdah State in Al-Zoroub area targete a groundwater quality for 20 wells in private farms. The water samples were taken from these wells and subjected to analysis for microbial and geochemical aspects. For this analysis, the assorted devices …

Resaca Ecosystem Development: Colonization And Succession Of The Macroinvertebrate Community, Leah M. Mcintosh

Theses and Dissertations - UTB/UTPA

Freshwater wetlands in the Lower Rio Grande Valley of Texas are locally known as resacas. Resacas are remnants of the Rio Grande River channel that were cut off by sedimentation and erosion of river banks. Many are maintained as permanent wetlands through intermittent water pumping from the river; and provide valuable habitat for fish, invertebrates, migratory birds and a diverse floral community in the semi-arid environment of South Texas. Three resacas in different stages of ecosystem development were studied, including one from day zero after re-flooding. The objectives were to document the colonization process of the re-flooded resaca and the …

A Comparison Of Fish Communities Over Different Reef Configurations In The Northwestern Gulf Of Mexico, Catheline Y. M. Froehlich

Theses and Dissertations - UTB/UTPA

High fishing pressure and limited natural habitat characterize the otherwise barren northwestern Gulf of Mexico. South Texas lacks extensive research of local natural and artificial reefs, and few studies report fish community and sportfish analysis of different reef densities. To alleviate this lack of data, fish abundances were monitored at different reef configurations in the PS-1047 Reef, 13 km off Port Mansfield, Texas, where 4000 concrete culverts were placed in 2011. Four culvert categories (CC1: 1-30 culverts, CC2: 31-70 culverts, CC3: 71-120 culverts, and CC4: 121-190 culverts in a 30-m radius), natural reefs and bare areas were sampled. Species abundances …

Metformin And Erlotinib Synergize To Inhibit Basal Breast Cancer, Ying-Ka Ingar Lau, Xing Du, Vinayak Rayannavar, Benjamin Hopkins, Jacquelyn Shaw, Eliana Bessler, Tiffany Thomas, Maira M. Pires, Megan Keniry

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Basal-like breast cancers (BBCs) are enriched for increased EGFR expression and decreased expression of PTEN. We found that treatment with metformin and erlotinib synergistically induced apoptosis in a subset of BBC cell lines. The drug combination led to enhanced reduction of EGFR, AKT, S6 and 4EBP1 phosphorylation, as well as prevented colony formation and inhibited mammosphere outgrowth. Our data with other compounds suggested that biguanides combined with EGFR inhibitors have the potential to outperform other targeted drug combinations and could be employed in other breast cancer subtypes, as well as other tumor types, with activated EGFR and PI3K signaling. Analysis …

Palo Alto Battlefield National Historical Park Breeding Bird Monitoring Data Fy 2014, Kenneth D. Pruitt

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Data are part of the GULN Inventory and Monitoring Program Land bird monitoring project for PAAL. Data were collected by Kenneth Pruit through a cooperative agreement with GULN and UT Brownsville in 2014. A separate reference is available for the Field Sheets that accompanies this data set.

https://irma.nps.gov/DataStore/Reference/Profile/2218507

Cross-Disciplinary Sciences At Gettysburg College: Second Annual Poster Presentation, X-Sig

Student Publications

This booklet includes Biology student presentations by: Taylor Bury, Abigail Dworkin-Brodsky, Mary Pearce, Jasper Leavitt, Morgan Panzer, Ellen Petley, Kalli Qutub, Taylor Randell, Samantha Eck, Lana McDowell, Jenn Soroka, Celina Harris, Natalie Tanke, Alexandra Turano, and Caroline Garliss.

This booklet includes Biochemistry & Molecular Biology student presentations by: Matthew Dunworth, Andrew Sydenstricker, Brianne Tomko, Albert Vill, Warren Campbell, David Van Doren, Kevin Mrugalski, Stacey Heaver, Alecia Achimovich, and Katherine Boas.

This booklet includes Chemistry student presentations by: Kristen Baker, Laura Lee, Kathryn Fodale, Daniel Ruff, Michael Counihan, Ida DiMucci, Joshua Sgroi, Celina Harris, and Natalie Tanke.

This booklet include Health …

The Relative Importance Of Number, Duration, And Intensity Of Cold Stress Events In Determining Survival And Energetics Of An Overwintering Insect, Katie E. Marshall, Brent J Sinclair

Biology Publications

1. The relationship between abiotic stress and fitness in an individual is usually described by the intensity and duration of stress. Yet in natural systems, variability in abiotic stress is common. Since individuals have physiological and fitness responses to single bouts of stress, frequency of stress may also determine the lifetime success of an organism. However, the majority of laboratory studies have focused only on the effects of single stress events.
2. We investigated the relative importance of stress parameters including duration, intensity and number of cold events on the short-term physiology and long-term fitness in the freeze-avoiding eastern spruce budworm Choristoneura …

Ontogenetic Trait Variation Influences Tree Community Assembly Across Environmental Gradients, Marko J. Spasojevic, Elizabeth A. Yablon, Brad Oberle, Jonathan A. Myers

Biology Faculty Research

Intraspecific trait variation is hypothesized to influence the relative importance of community assembly mechanisms. However, few studies have explicitly considered how intraspecific trait variation among ontogenetic stages influences community assembly across environmental gradients. Because the relative importance of abiotic and biotic assembly mechanisms can differ among ontogenetic stages within and across environments, ontogenetic trait variation may have an important influence on patterns of functional diversity and inferred assembly mechanisms. We tested the hypothesis that variation in functional diversity across a topo-edaphic gradient differs among ontogenetic stages and that these patterns reflect a shift in the relative importance of different assembly …

Minimal Effects Of An Invasive Flowering Shrub On The Pollinator Community Of Native Forbs, Y Anny Chung, Laura A. Burkle, Tiffany M. Knight

Biology Faculty Research

Biological invasions can strongly influence species interactions such as pollination. Most of the documented effects of exotic plant species on plant-pollinator interactions have been observational studies using single pairs of native and exotic plants, and have focused on dominant exotic plant species. We know little about how exotic plants alter interactions in entire communities of plants and pollinators, especially at low to medium invader densities. In this study, we began to address these gaps by experimentally removing the flowers of a showy invasive shrub, Rosa multiflora, and evaluating its effects on the frequency, richness, and composition of bee visitors to …

Landscape Genetics Of The Endangered California Tiger Salamander (Ambystoma Californiense) In The Los Vaqueros Watershed, Ryan Neal Vincent

Mahurin Honors College Capstone Experience/Thesis Projects

Genetic diversity is essential for maintaining healthy biological systems, and dispersal-mediated gene flow increases genetic diversity by introducing new alleles to a gene pool. Populations that frequently experience gene flow will show characteristic similarities in allele frequencies. Measuring genetic diversity among many populations across a landscape has proven to be a powerful approach for assessing the ways that habitat discontinuities may affect patterns of gene flow, and in turn, influence allele frequencies and population dynamics. This study examines the landscape-level population genetic structure of the California tiger salamander, Ambystoma californiense, within the Los Vaqueros Watershed of Contra Costa County, …

Functional And Expression Analysis Of A Novel Basement Membrane Degrader In Drosophila Melanogaster, Christopher J. Fields

Mahurin Honors College Capstone Experience/Thesis Projects

SNUTS is a protein coding gene present in Drosophila melanogaster whose product contains conserved domains that are present in a range of eukaryotic organisms. The SNUTS protein is made up of four domains, two Sterile Alpha Motif (SAM) domain, and two Plant Homeodomains (PHD). The biological function of SNUTS or the various domains is largely unknown. One study demonstrated that SNUTS was important for proper development of the stem cell niche. In the present study data from both overexpression and downregulation of Snuts and the resulting phenotypes are presented. Data supporting potential mechanisms resulting in the phenotype are also presented. …