Biology Commons^™

Diagnosis And Prevention Of Metabolic Diseases In Drosophila Melanogaster, Claire Marie Coogan

Collection of Engaged Learning

No abstract provided.

The Advertisement Calls And Distribution Of Two Sympatric Species Of Chiasmocleis (Méhely 1904) (Anura, Microhylidae, Gastrophryninae) From The Atlantic Forest, Mauricio C. Florani, Caio Vinicus De Mira Mendes, Iuri Ribeiro Dias, Danilo Silva Ruas, João Fillipe Riva Tonini, Rafael O. De Sá

Biology Faculty Publications

The advertisement calls of Chiasmocleis cordeiroi and C. crucis are described for populations from the municipalities of Igrapiúna and Camacan, respectively, state of Bahia, Brazil. Both calls consist of multipulsed notes produced in series. Differences between the two calls are: dominant frequency, higher in C. cordeiroi (range 4500–4898 Hz; C. crucis range 4069–4435 Hz); note rate, higher in C. cordeiroi (range 6.20–7.46 s/note; C. crucis range 5.17–5.59 s/note); pulse rate, higher in C. cordeiroi (151.82–194.83 s/note; C. crucis range 125.30– 142.12 s/note); and the structure of the modulation patterns of the notes. Moreover, the advertisement calls of C. crucis and …

The Advertisement Calls And Distribution Of Two Sympatric Species Of Chiasmocleis (Méhely 1904) (Anura, Microhylidae, Gastrophryninae) From The Atlantic Forest, Maruicio C. Forlani, Caio Vinicius De Mira Mendes, Iuri Ribeiro Dias, Danilo Silva Ruas, João Filipe Riva Tonini, Rafael O. De Sá

Biology Faculty Publications

The advertisement calls of Chiasmocleis cordeiroi and C. crucis are described for populations from the municipalities of Igrapiúna and Camacan, respectively, state of Bahia, Brazil. Both calls consist of multipulsed notes produced in series. Differences between the two calls are: dominant frequency, higher in C. cordeiroi (range 4500-4898 Hz; C. crucis range 4069-4435 Hz); note rate, higher in C. cordeiroi (range 6.20--7.46 s/note; C. crucis range 5.17-5.59 s/note); pulse rate, higher in C. cordeiroi (151.82-194.83 s/note; C. crucis range 125.30- 142.12 s/note); and the structure of the modulation patterns of the notes. Moreover, the advertisement calls of C. crucis and …

Improved Tolerance To Salt And Water Stress In Drosophila Melanogaster Cells Conferred By Late Embryogenesis Abundant Protein., Matthew Marunde, Dilini Samarajeewa, John Anderson, Shumin Li, Steven Hand, Michael Menze

Faculty and Staff Scholarship

Mechanisms that govern anhydrobiosis involve the accumulation of highly hydrophilic macromolecules, such as late embryogenesis abundant (LEA) proteins. Group 1 LEA proteins comprised of 181 (AfLEA1.1) and 197 (AfLEA1.3) amino acids were cloned from embryos of Artemia franciscana and expressed in Drosophila melanogaster cells (Kc167). Confocal microscopy revealed a construct composed of green fluorescence protein (GFP) and AfLEA1.3 accumulates in the mitochondria (AfLEA1.3-GFP), while AfLEA1.1-GFP was found in the cytoplasm. In the presence of mixed substrates, oxygen consumption was statistically identical for permeabilized Kc167 control and Kc167-AfLEA1.3 cells. Acute titrations of permeabilized cells with NaCl up to 500 mM led …

Volume 05, Ian Karamarkovich, Jessica Cox, Kyle Fowlkes, Allison Pawlowski, Kaitlin Major, Carrie Dunham, Kelsey Scheitlin, Kathryn Grayson, Ashley Johnson, Jennifer Nehrt, Kelsey Stolzenbach, Kristin Mcquarrie, Sara Nelson, Melisa Michelle, Jessica Sudlow, Perry Bason, Danielle Dmuchawski, Mariah Asbell, Matthew Sakach, Timothy Smith Jr., Annaliese Troxell, T. Dane Summerell, Sarah Ganrude, Malina Rutherford, Hannah Hopper, John Berry Jr., James Early, Colleen Festa, Chelsea D. Taylor, Michelle Maddox, Kaitlyn Smith, Sarah Schu, Cabell Edmunds, Katherine Grayson, Kayla Tornai

Incite: The Journal of Undergraduate Scholarship

Introduction from Dean Dr. Charles Ross

The Tallis House as an Extension of Emily Tallis in McEwan's Atonement by Ian Karamarkovich

Graphic Design by Jessica Cox

Graphic Design by Kyle Fowlkes

Graphic Design by Allison Pawlowski

Incorporating Original Research in The Classroom: A Case Study Analyzing the Influence of the Chesapeake Bay on Local Temperatures by Kaitlin Major, Carrie Dunham and Dr. Kelsey Scheitlin

Graphic Design by Kathryn Grayson

Graphic Design by Ashley Johnson

Facing the Music: Environmental Impact Assessment of Building A Concert Hall on North Campus by Jennifer Nehrt, Kelsey Stolzenbach And Dr. Kelsey Scheitlin

Art by Kristin …

Analyzing The Population Structure Of Captive Marmosets Using Alu Retrotransposons, Megan Ranck

Honors Capstones

No abstract provided.

The Vocal Mechanism Of Two Songbirds, The Bengalese Finch (Lonchura Striata) And The Northern Cardinal (Cardinalis Cardinalis): 3d Modeling Of Complex Skeleto-Muscular Systems Based On Computer Visualization And Animation Of X-Ray Ct Data, Caroline Blevins

Honors Capstones

No abstract provided.

The Effect Of Salinity On Cftr Activity In The Intestine Of Fundulus Grandis By A Cgmp-Dependent Pathway, Brandyn Chinn

Honors Capstones

No abstract provided.

Localizations Of 11Β-Hydroxysteroid Dehydrogenase Type 2 And Mineralocorticoid Receptors In The Rat Hypothalamus, Remi Wilson

Honors Capstones

No abstract provided.

Abundance As A Conservation Value, Kent H. Redford, Joel Berger, Steve Zack

Biological Sciences Faculty Publications

No abstract provided.

Diet Of Juvenile Alabama Shad (Alosa Alabamae) In Two Northern Gulf Of Mexico Drainages, Paul F. Mickle, Jacob F. Schaefer, Donald A. Yee, Susan B. Adams

Faculty Publications

Understanding food-web ecology is valuable to conservation by linking interactions of multiple species together and illustrating the functionality of trophic exchange. Alosa alabamae (Alabama Shad), an anadromous species, reproduces in northern Gulf of Mexico drainages from February through May, and for this study, the Pascagoula and Apalachicola rivers were chosen to sample juvenile Alabama Shad. The age-0 fish mature within these rivers and have the potential to impact the food web of the systems in which maturation occurs. The focus was to determine if diet changes as Alabama Shad mature, and to identify diet differences between drainages. Diets of Alabama …

Evidence For The Requirement Of 14-3-3eta (Ywhah) In Meiotic Spindle Assembly During Mouse Oocyte Maturation, Santanu De, Douglas Kline

Biology Faculty Articles

Background

The 14-3-3 (YWHA) proteins are central mediators in various cellular signaling pathways regulating development and growth, including cell cycle regulation. We previously reported that all seven mammalian 14-3-3 isoforms are expressed in mouse oocytes and eggs and that, 14-3-3η (YWHAH) accumulates and co-localizes in the region of meiotic spindle in mouse eggs matured in vivo. Therefore, we investigated the role of 14-3-3η in spindle formation during mouse oocyte maturation.

Results

Examination of oocytes matured in vitro demonstrated that 14-3-3η accumulates in both meiosis I and II spindles. To explore if 14-3-3η interacts directly with α-tubulin in meiotic spindles, …

Internet Reviews: Ben (Biosciednet) Portal, John Creech

Library Scholarship

Review of the University of Michigan's BioSciEdNet Portal for use by undergraduates, graduate students, faculty instructors, and researchers.

Insights Into Archaeal Evolution And Symbiosis From The Genomes Of A Nanoarchaeon And Its Inferred Crenarchaeal Host From Obsidian Pool, Yellowstone National Park, Mircea Podar, Kira S. Makarova, David E. Graham, Yuri L. Wolf, Eugene V. Koonin, Anna-Louise Reysenbach

Biology Faculty Publications and Presentations

Background: A single cultured marine organism, Nanoarchaeum equitans, represents the Nanoarchaeota branch of symbiotic Archaea, with a highly reduced genome and unusual features such as multiple split genes.

Results: The first terrestrial hyperthermophilic member of the Nanoarchaeota was collected from Obsidian Pool, a thermal feature in Yellowstone National Park, separated by single cell isolation, and sequenced together with its putative host, a Sulfolobales archaeon. Both the new Nanoarchaeota (Nst1) and N. equitans lack most biosynthetic capabilities, and phylogenetic analysis of ribosomal RNA and protein sequences indicates that the two form a deepbranching archaeal lineage. However, the Nst1 …

Functional Annotation And Comparative Analysis Of A Zygopteran Transcriptome, Alexander G. Shanku, Mark A. Mcpeek, Andrew D. Kern

Dartmouth Scholarship

In this paper we present a de novo assembly of the transcriptome of the damselfly (Enallagma hageni) through the use of 454 pyrosequencing. E. hageni is a member of the suborder Zygoptera, in the order Odonata, and Odonata organisms form the basal lineage of the winged insects (Pterygota). To date, sequence data used in phylogenetic analysis of Enallagma species have been derived from either mitochondrial DNA or ribosomal nuclear DNA. This Enallagma transcriptome contained 31,661 contigs that were assembled and translated into 14,813 individual open reading frames. Using these data, we constructed an extensive dataset of 634 orthologous nuclear protein-encoding …

Human Common Fragile Sites, Identification, And Analysis Of Breaks Using Saccharomyces Cerevisiae, William Joseph Fitzsimmons

Master's Theses and Doctoral Dissertations

Common fragile sites, which are areas of the genome prone to breaks under replication stress, are frequently altered in tumor cells. Two hypotheses have been proposed to explain why common fragile sites break: (1)AT-rich segments with high flexibility in the fragile site fold into secondary structures, leading to replication fork stalling and chromosomal breakage, and (2) Fragile site regions lack sufficient origins of replication, which paired with replication stress results in failure to complete replication before mitosis and eventual breakage of unreplicated DNA. To test these hypotheses, we mapped 30 break locations in each of two yeast artificial chromosomes (YACs) …

Patterns Of Gene Expression From Human Costal Cartilage In Relation To The Chest Wall Deformity Pectus Carinatum, Janna E. Grubbs

Biological Sciences Theses & Dissertations

Cartilage deformities within the human chest wall, specifically pectus excavatum (PE) and pectus carinatum (PC) are common (1/400-1/1000) and yet, despite their clinical significance, are some of the least studied disorders pertaining to cartilage [1]. The costal cartilage connecting "false ribs" 8-10 to the sternum is often abnormally grown and can lead to formation of a severely sunken "funnel" chest (PE) or push outwards to form a "pigeon" chest (PC). Both conditions can have impact on the diaphragm, heart, lungs, and psychological function. An established ratio of PE and PC in males to females is 4:1, indicating a sex-linked male …

Isolation Of A Dosage Dependent Suppressor Using Saccharomyces Cerevisiae As A Model System, Rachel Chimner

Masters Theses

Human pathogenic Yersinia use a type three secretion system to deliver various effector proteins into host cells. Once these effector proteins are within the cell, they elicit a cascade of events that disrupt the normal immune response. One of these effectors, YopT, is known to disrupt actin distribution but it is currently unknown what YopT targets within the host cell. To investigate the cellular targets of the YopT effector, we use a yeast model system and a dosage-dependent suppression screen. The dosage-dependent suppression screen isolated three plasmids able to suppress YopT induced lethality within yeast. One of them, 2T9, was …

Assortative Mating In Ixodes Scapularis (Acari: Ixodidae) Ticks? And Ixodes Scapularis Infest Male Deer More Often Than Female Deer At Savannah River Site, (Aiken, Sc), Jenny Dickson

College of Graduate Studies: Theses & Dissertations

In this study we explored the hypothesis that the mitochondrial genetic diversity observed in Ixodes Scapularis ticks in the Southeastern United States is maintained through assortative mating. The study of 319 couples of ticks collected in copula from deer at the Savannah River Site (Aiken, SC) showed that ticks assigned to mitochondrial (12SrDNA and d-loop genes) phylogenetic monophyletic clades do not chose their mating partner based on genetic similarity or genetic diversity. The genetic composition of couples did not differ significantly from random choice. Our data indicate that if genetic diversity is maintained in this tick population, this cannot be …

Migration Timing And Wintering Areas Of Three Species Of Flycatchers (Tyrannus) Breeding In The Great Plains Of North America, Alex E. Jahn, Victor R. Cueto, James W. Fox, Michael S. Husak, Daniel H. Kim, Diane V. Landoll, Jesús Pinto Ledezma, Heather K. Lepage, Douglas J. Levey, Michael T. Murphy, Rosalind B. Renfrew

Biology Faculty Publications and Presentations

Descriptions of intra- and interspecific variation in migratory patterns of closely related species are rare yet valuable because they can help assess how differences in ecology and life-history strategies drive the evolution of migration. We report data on timing and location of migration routes and wintering areas, and on migratory speed and phenology, of Eastern Kingbirds (Tyrannus tyrannus) from Nebraska and Oklahoma and of Western Kingbirds (T. verticalis) and Scissor-tailed Flycatchers (T. forficatus) from Oklahoma. Eastern Kingbirds primarily departed the breeding site in September, migrating to the Amazon Basin (Bolivia and Brazil), >6,400 km …

Opposing Mechanisms Drive Richness Patterns Of Core And Transient Bird Species, Jessica R. Coyle, Allen H. Hurlbert, Ethan P. White

Biology Faculty Publications

Studies of biodiversity typically assume that all species are equivalent. However, some species in a community maintain viable populations in the study area, while others occur only occasionally as transient individuals. Here we show that North American bird communities can reliably be divided into core and transient species groups and that the richness of each group is driven by different processes. The richness of core species is influenced primarily by local environmental conditions, while the richness of transient species is influenced primarily by the heterogeneity of the surrounding landscape. This demonstrates that the well-known effects of the local environment and …

Effects Of Synthetic Histone Deacetylase Inhibitors On 3t3l1 Preadipocyte Adipogenic Differentiation Potential, Vikramjeet Singh

Honors Capstones

No abstract provided.

Potent Mutagens Have Positive And Negative Effects On Viral Fitness Of Reovirus In Vitro, Jennie Altman

Honors Theses

Due to the inherently error-prone nature of RNA replication, mutations to genomes of RNA viruses occur frequently and accumulate. We hypothesized that RNA versions of nucleoside analogues that increase mutation rates in DNA could cause increases in the mutation rate of a model RNA virus, Reovirus, and decrease the fitness of the virus in vitro due to the accumulation of deleterious mutations. After conducting multiple passages of Reovirus in mouse L929 cells in the presence of these potential RNA mutagens in four separate trials, there were not only virus samples with the expected decreased infectivity, but surprisingly, samples with marked …

Selenium Biotransformations In An Engineered Aquatic Ecosystem For Bioremediation Of Agricultural Wastewater Via Brine Shrimp Production, Radomir Schmidt, Prapakorn Tantoyotai, Sirine C. Fakra, Matthew A. Marcus, Soo In Yang, Ingrid J. Pickering, Gary S. BañUelos, Krassimira R. Hristova, John L. Freeman

Biological Sciences Faculty Research and Publications

An engineered aquatic ecosystem was specifically designed to bioremediate selenium (Se), occurring as oxidized inorganic selenate from hypersalinized agricultural drainage water while producing brine shrimp enriched in organic Se and omega-3 and omega-6 fatty acids for use in value added nutraceutical food supplements. Selenate was successfully bioremediated by microalgal metabolism into organic Se (seleno-amino acids) and partially removed via gaseous volatile Se formation. Furthermore, filterfeeding brine shrimp that accumulated this organic Se were removed by net harvest. Thriving in this engineered pond system, brine shrimp (Artemia franciscana Kellogg) and brine fly (Ephydridae sp.) have major ecological relevance as important food …

Variation In Egg Components: A Study Of Maternal Investment And Resource Partitioning In The Nesting Loggerhead Sea Turtle; Estimating Genic Variation And Mapping Genetic Lineage Of A Rare Captive Helodermatid Population: Heloderma Horridum Charlesbogerti, Ketan V. Patel

College of Graduate Studies: Theses & Dissertations

Loggerhead sea turtles have the highest egg yields of any oviparous non-avian reptiles. Blood urea nitrogen levels increased as the season progressed while total blood albumen and total protein levels decreased. Wet egg mass (H = 1.7719 df = 2 p = 0.0375*) and albumen mass (H = 6.0507 df = 2 p = 0.0485*) significantly decreased across the nesting season however, wet yolk did not. Analysis of dried egg components showed that dry yolk and albumen did not differ across the nesting season. In addition on no seasonal change in dried egg components, hatchling size was conserved across the …

In Vitro Cultivation Of The Microphallid Trematode Gynaecotyla Adunca, Jenna West

College of Graduate Studies: Theses & Dissertations

It is important to study the cultivation of parasites in vitro for many reasons, such as to aid in developing antihelminthic drugs and vaccines, to eliminate the need for vertebrate hosts in parasite culture, and to more easily study the genetics and the biology of parasites. Trematodes have complex life cycles with multiple hosts which makes them difficult to grow in vitro. However, microphallid trematodes are excellent candidates for parasite in vitro cultivation because they are short lived and progenetic. The goal of my study was to optimize in vitro culture conditions for the microphallid trematode, Gynaecotyla adunca. …

Spontaneous Male Death And Monogyny In The Dark Fishing Spider Dolomedes Tenebrosus Hentz, 1843 (Araneae, Pisauridae), Steven K. Schwartz

School of Biological Sciences: Dissertations, Theses, and Student Research

Male animals typically attempt to mate with multiple females in order to increase their reproductive success. In some species, however, males instead invest in fertilizing the eggs of a single female. Monogyny (male monogamy) is found in a diverse assemblage of taxa, and recent theoretical work reveals that a male-biased sex ratio can favor the evolution of this relatively rare mating system. We integrate this theoretical framework with field observations and laboratory experiments involving the sexually size dimorphic fishing spider, Dolomedes tenebrosus. Results from mating trials revealed a novel form of self-sacrifice behavior where males spontaneously die when they …

Novel Architecture Of Costal Cartilage And Implications In Chest Wall Deformities, Anthony J. Asmar

Biological Sciences Theses & Dissertations

Costal cartilage is a type of hyaline cartilage that forms rod-like structures that connect the ribs to the sternum. Deformation of costal cartilage is observed in the chest wall deformities, pectus excavatum and pectus carinatum. Pectus excavatum involves a sternal displacement causing a depression of the chest while pectus carinatum causes a protrusion of the chest. As costal cartilage is not a widely studied tissue, this leaves little knowledge into possible factors involved in the pathogenesis of pectus deformities. Costal cartilage in these deformities has been described as being weakened and may implicate proteoglycans which play an important role in …

Plant-Pollinator Interactions Over 120 Years: Loss Of Species, Co-Occurrence, And Function, Laura A. Burkle, John C. Marlin, Tiffany M. Knight

Biology Faculty Research

Using historic data sets, we quantified the degree to which global change over 120 years disrupted plant-pollinator interactions in a temperate forest understory community in Illinois, USA. We found degradation of interaction network structure and function and extirpation of 50% of bee species. Network changes can be attributed to shifts in forb and bee phenologies resulting in temporal mismatches, nonrandom species extinctions, and loss of spatial co-occurrences between extant species in modified landscapes. Quantity and quality of pollination services have declined through time. The historic network showed flexibility in response to disturbance; however, our data suggest that networks will be …

Evolution Of Sindbis Virus With A Low-Methionine-Resistant Phenotype Is Dependent Both On A Pre-Existing Mutation And On The Methionine Concentration In The Medium, Victor Stollar, Virginia Mensah, Sandra Adams, Mei Ling Li

Department of Biology Faculty Scholarship and Creative Works

SVlm21 is a mutant of Sindbis virus which was isolated by serial passage of virus in mosquito cells maintained in low-methionine medium; it therefore has a low-methionine-resistant (LMR) phenotype. This phenotype requires mutations at nts 319 and 321; these mutations result in Arg to Leu and Ser to Cys changes at positions 87 and 88 respectively in the viral methyl transferase, nsP1. To better understand the genesis of SVlm21, we carried out serial passages of viruses having only one of these amino acid changes, but in mosquito cells maintained in normal methionine-medium. Whether the passage was begun with SV319 or …