Biology Commons^™

Occurrence, Survival, And Persistence Of The Fecal Indicator Bacterium, Enterococcus Mundtii, In Soils Of A Contaminated Watershed, Marc Carpenter

Masters Theses, 2010-2019

The Clean Water Act of 1972 raised awareness of the extent of the pollution in U.S. waters and the need for monitoring and identifying sources of contamination. Surface water quality is routinely evaluated using fecal indicators, such as Enterococcus spp. Recent studies in a south Texas watershed showed that fecal bacteria were being transported to water via agricultural land runoff following rainfall, suggesting that soil may be a source of these bacteria. In this study, soils from fields under different crop covers were sampled to determine seasonal levels of enterococci and species of enterococci were identified using the BIOLOG™ Microbial …

Probiotic Bioaugmentation Of An Anti-Bd Bacteria, Janthinobacterium Lividum, On The Amphibian, Notophthalmus Viridescens: Transmission Efficacy And Persistence Of The Probiotic On The Host And Non-Target Effects Of Probiotic Addition On Ecosystem Components, Molly Bletz

Masters Theses, 2010-2019

Amphibians worldwide are threatened by the fungal disease chytridiomycosis, caused by the skin pathogen Batrachochytrium dendrobatidis. Mutualistic skin bacteria are a critical element in amphibians’ defenses against chytridiomycosis. Probiotic bioaugmentation of beneficial, anti-Bd bacteria on amphibians is a potential conservation strategies. Outdoor experimental ponds were used to investigate transmission efficacy and persistence of the anti-Bd bacteria, Janthinobacterium lividum, on the amphibian, Notophthalmus viridescens. More specifically, this research investigated whether a short-term individual bath, environmental bioaugmentation, or both are necessary to afford transmission and persistence of J. lividum on N. viridescens. Additionally, this research investigated the effectiveness of these different probiotic …

The Identity Of Rana Margaritifera Laurenti, 1768 (Anura, Bufonidae), Esteban O. Lavilla, Ulisses Caramaschi, José A. Langone, José P. Pombal Jr., Rafael O. De Sá

Biology Faculty Publications

Rana margaritifera was described by Laurenti in 1768 and currently is associated to the genus Rhinella, under the combination Rhinella margaritifera. Currently, the R. margaritifera species group consists of 16 recognized species. Further-more, many additional species have been suggested to exist in this group which highlights the ambiguity surrounding the identity of Rhinella margaritifera and impend further description of the species in this group. After an exhaustive bibliographic review, we concluded that the recent designation of a lectotype for R. margaritifera is invalid according with Art. 73, ICZN, 1999. Herein, we designate and provide the description of a …

Amphibian Biodiversity Survey - Wetland Area Southwest Of Montana Tech, Trace Forkan, Siobhan Wock, Cody Doyle, Joyce Wilhelm

TECHxpo

The primary goal of this project was to launch a pilot population study in the spring-fed wetland area southwest of Montana Tech to establish baseline data on density, distribution, abundance, and diversity of amphibians in the area. The current confirmed species at the select site is the Columbia spotted frog (Rana luteiventris). Based on preliminary habitat assessment and existing literature, other species possibilities included the long-toed salamander (Ambrystoma macrodactylum) boreal chorus frog (Pseudacris maculata), the Rocky Mountain tailed frog (Ascaphus montanus), and the leopard frog (Rana pipiens), (Werner et al. 2004) …

Metronidazole Effects On Hindgut Microflora Residing Within The Subterranean Termite Reticulitermes Flavipes, Alexandra Gjevre

Morehead State Theses and Dissertations

A thesis presented to the faculty of the College of Science and Technology at Morehead State University in partial fulfillment of the requirements for the Degree of Master of Science by Alexandra Gjevre on May 1, 2013.

Multicellular Phenotypic Studies Of Single Gene Variants In Myxococcus Xanthus, Jinyuan Yan

Biology - Dissertations

There are several systematic methods designed to link genes to cellular processes. These methods are derived from different hypotheses and are largely complementary to each other. This dissertation presents a systematic study of functional genetics and related phenotypes using quantitative methods. The first part of this dissertation will report the successful identification and characterization of 28 genes in the multicellular bacterium Myxococcus xanthus using three different methods: sequence homology, transcription activation and protemoics. The results from this research extended the list of M. xanthus genes involved in multicellularity, and expanded our knowledge regarding the possible molecular pathways underlying physiological and …

Thermodynamic And Structural Characterization Of The Interaction Between Wd40 Repeat Containing Protein 5 (Wdr5) And Human Set1 Family Methyltransferases, Venkat Dharmarajan

Biology - Dissertations

Translocations and amplifications of the mixed lineage leukemia-1 (MLL1) gene are associated with aggressive myeloid and lymphocytic leukemias in humans. MLL1 is a member of the SET1 family of histone H3 lysine 4 (H3K4) methyltransferases, which are required for transcription of genes involved in hematopoiesis and development. MLL1 associates with a sub-complex containing WDR5, RbBP5, Ash2L, and DPY-30 (WRAD), which together form the MLL1 core complex that is required for sequential mono- and dimethylation of H3K4. We previously demonstrated that WDR5 binds the conserved WDR5 interaction (Win) motif of MLL1 in vitro, an interaction that is required for the H3K4 …

Community Metrics And Trophic Dynamics In Tidal Creeks In An Anthropogenically Fragmented, Coastal Landscape, Michael Robert Lowe

Dissertations

Salt marsh landscapes are among the most anthropogenically altered ecosystems in the world. Urbanization (i.e., accumulation of impervious cover and man made structrues) of the coastal landscape can disrupt the delivery of numerous ecosystem services. Among the many services provided by salt marsh habitats, they serves as the primary habitats for distinct macroinfauna (i.e., benthic and epibenthic macrofauna) and nekton (i.e., fish and decapod crustaceans) assemblages. In this dissertation, I used a number of metrics to test the overarching hypothesis that coastal urbanization has negative consequences for salt marsh faunal assemblages. Chapter I uses a landscape ecology approach to show …

Intracellular Delivery Of Nanoparticles And Dnas By Ir9 Cell-Penetrating Peptides, Betty Revon Liu, Ji-Sing Liou, Yue-Wern Huang, Robert Aronstam, Han-Jung Lee

Biological Sciences Faculty Research & Creative Works

Cell-penetrating peptides (CPPs) comprised of basic amino residues are able to cross cytoplasmic membranes and are able to deliver biologically active molecules inside cells. However, CPP/cargo entrapment in endosome limits biomedical utility as cargoes are destroyed in the acidic environment. In this study, we demonstrate protein transduction of a novel CPP comprised of an INF7 fusion peptide and nona-arginine (designated IR9). IR9 noncovalently interacts with quantum dots (QDs) and DNAs to form stable IR9/QD and IR9/DNA complexes which are capable of entering human A549 cells. Zeta-potentials were a better predictor of transduction efficiency than gel shift analysis, emphasizing the importance …

Factors Influencing Nest Site Selection By Wood Turtles (Glyptemys Insculpta) In An Altered Forest Landscape, Ellery Ruther

Theses & Honors Papers

There have been many studies concerning wood turtle (Glyptemys insculpta) nest site selection, including studies that evaluate nest site conditions when stream sand banks are not available. However, because of the unique landscape at our study site (high gradient, first order streams) and rapidly diminishing wood turtle populations in Virginia, I am evaluating wood turtle nest site selection. Nine physiographic and vegetative characteristics from nest, positive, negative-one and negative-two control locations were evaluated using binomial generalized linear models and then best fit models were chosen using Akaike's Information Criterion (AIC). It was found that in lieu of typical stream …

Effect Of Coconut Oil On Ulcerative Colitis In The Mouse Model, Pranav Chandra Alok

Masters Theses & Specialist Projects

Ulcerative colitis (UC) is a chronic disease of the colon or large intestine that causes inflammation and ulceration of the inner lining of the colon and rectum. In patients with ulcerative colitis, the body’s immune system overreacts and the body mistakes food, bacteria or other internal materials in the colon for an invading substance. The immune system attacks the material, thus irritating the colon. Limited knowledge of inflammatory conditions coupled with a narrow range of therapeutic options necessitates investigating the role of natural products. This study describes the effect of natural coconut oil on chemically-induced acute and chronic disease in …

A Hands-On Activity To Introduce The Effects Of Transmission By An Invasive Species, Barbara May

Biology Faculty Publications

This activity engages students to better understand the impact of transmission by invasive species. Using dice, poker chips, and paper plates, an entire class mimics the spread of an invasive species within a geographic region. The activity can be modified and conducted at the K-16 levels.

Patatin-Related Phospholipase Pplaiiiδ Increases Seed Oil Content With Long-Chain Fatty Acids In Arabidopsis, Maoyin Li, Sung Bahn, Chuchuan Fan, Jia Li, Tien Phan, Michael Ortiz, Mary Roth, Ruth Welti, Jan Jaworski, Xuemin Wang

Biology Department Faculty Works

The release of fatty acids from membrane lipids has been implicated in various metabolic and physiological processes, but in many cases, the enzymes involved and their functions in plants remain unclear. Patatin-related phospholipase As (pPLAs) constitute a major family of acyl-hydrolyzing enzymes in plants. Here, we show that pPLAIIId promotes the production of triacylglycerols with 20- and 22-carbon fatty acids in Arabidopsis (Arabidopsis thaliana). Of the four pPLAIIIs (a, b, g, d), only pPLAIIId gene knockout results in a decrease in seed oil content, and pPLAIIId is most highly expressed in developing embryos. The overexpression of pPLAIIId increases the content …

The Effects Of Fire On The Vernal Herbs Of An Eastern Mesic Forest, David Randolph Kem

Masters Theses & Specialist Projects

The effects of fire on vernal herbs of the mesic forests of eastern North America are poorly understood. I studied the influence of prescribed fire on species richness, abundance of rare and common species, and density of exotics in the vernal herbaceous layer. To determine these effects, three sites in central Kentucky were surveyed prior to and following one of three treatments: spring burn, winter burn, or negative control. I conducted low-intensity spring burns in April 2010 and winter burns in February 2011. I used chi square analyses to test for changes in species richness, abundance of rare species, abundance …

The Early Dissemination Defect Attributed To Disruption Of Decorin-Binding Proteins Is Abolished In Chronic Murine Lyme Borreliosis, Denise M. Imai, D. Scott Samuels, Sunlian Feng, Emir Hodzic, Kim Olsen, Stephen W. Barthold

Biological Sciences Faculty Publications

The laboratory mouse model of Lyme disease has revealed that Borrelia burgdorferi differentially expresses numerous outer surface proteins that influence different stages of infection (tick-borne transmission, tissue colonization, dissemination, persistence, and tick acquisition). Deletion of two such outer surface proteins, decorin-binding proteins A and B (DbpA/B), has been documented to decrease infectivity, impede early dissemination, and, possibly, prevent persistence. In this study, DbpA/B-deficient spirochetes were confirmed to exhibit an early dissemination defect in immunocompetent, but not immunodeficient, mice, and the defect was found to resolve with chronicity. Development of disease (arthritis and carditis) was attenuated only in the early stage …

Regulation Of Succinate-Fuelled Mitochondrial Respiration In Liver And Skeletal Muscle Of Hibernating Thirteen-Lined Ground Squirrels., Jason C L Brown, Dillon J Chung, Alex N Cooper, James F Staples

Biology Publications

Hibernating ground squirrels (Ictidomys tridecemlineatus) alternate between two distinct metabolic states throughout winter: torpor, during which metabolic rate (MR) and body temperature (Tb) are considerably suppressed, and interbout euthermia (IBE), during which MR and Tb briefly return to euthermic levels. Previous studies showed suppression of succinate-fuelled respiration during torpor in liver and skeletal muscle mitochondria; however, these studies used only a single, saturating succinate concentration. Therefore, they could not address whether mitochondrial metabolic suppression occurs under physiological substrate concentrations or whether differences in the kinetics of mitochondrial responses to changing substrate concentration might also contribute to mitochondrial metabolic regulation during …

The Effects Of Intestinal Microbial Community Structure On Disease Manifestation In Il-10-/- Mice Infected With Helicobacter Hepaticus, Courtney Robinson

Department of Biology Faculty Publications

BackgroundThe aberrant inflammation that is the hallmark of the inflammatory bowel diseases (IBD) is associated with several factors, including changes in the intestinal microbiota. Here, we confirmed that an intestinal microbiota is needed for development of typhlocolitis in Helicobacter hepaticus infected IL-10-/- C57BL/6 mice, and investigated the role of the microbiota in modulating disease.ResultsWe altered the murine microbiota by treatment with the antibiotics vancomycin or cefoperazone prior to H. hepaticus infection. Through surveys of the 16S rRNA encoding-gene, analyses of histology and changes in expression of host mediators, we correlated alterations in the microbiota with host responses. We found that …

The Effects Of Aging And Injury On The Murine Ependymal Barrier And Subventricular Zone, John Jeffrey Peters

University Scholar Projects

Previous research has shown that numerous age-related changes occur in the subventricular zone (SVZ) and diminish the neurogenic output of the region. Here, various agerelated changes in the structure of the lateral ventricle, the ependymal barrier, and the SVZ were examined. It was found that the walls of the lateral ventricles move together, adhere, and eventually fuse. This results in a degradation of the SVZ. Other changes associated with aging were found, including ependymal cell stretching, heightened, ependymal repair, changes in CSF flow velocity and dynamics, and altered ependymal cell polarity. These changes may be related to the process of …

Engaging Students In A Bioinformatics Activity To Introduce Gene Structure And Function, Barbara J. May

Biology Faculty Publications

Bioinformatics spans many fields of biological research and plays a vital role in mining and analyzing data. Therefore, there is an ever-increasing need for students to understand not only what can be learned from this data, but also how to use basic bioinformatics tools. This activity is designed to provide secondary and undergraduate biology students to a hands-on activity meant to explore and understand gene structure with the use of basic bioinformatic tools. Students are provided an “unknown” sequence from which they are asked to use a free online gene finder program to identify the gene. Students then predict the …

Bromus Tectorum Litter Alters Photosynthetic Characteristics Of Biological Soil Crusts From A Semiarid Shrubland, Marcelo D. Serpe, Eric Roberts, David J. Eldridge, Roger Rosentreter

Biology Faculty Publications and Presentations

Invasion by the exotic annual grass Bromus tectorum has increased the cover and connectivity of fine litter in the sagebrush steppes of western North America. This litter tends to cover biological soil crusts, which could affect their metabolism and growth. To investigate this possible phenomenon, biological soil crusts dominated by either the moss Bryum argenteum or the lichen Diploschistes muscorum were covered with B.tectorum litter (litter treatment) or left uncovered (control treatment) and exposed to natural field conditions. After periods of five and ten months, we removed the litter and compared the photosynthetic performance of biological soil crusts …

Influence Of Genetic Variation On Birth Defects In Caenorhabditis Elegans, Daniel Robert Kepple

Renée Crown University Honors Thesis Projects - All

In my Renee Crown Honors Capstone project, I studied how genetic variation influences birth defects that cause death in C. elegans embryos. I performed high-throughput hatching assay experiments of recombinant inbred advance intercross lines of C. elegans. These lines are genetically distinct from each other. I found significant variation in birth defects causing embryo death in these recombinant inbred advanced intercross lines. My results give evidence that gene interaction may play a significant role in causing birth defects resulting in death. My data also provides a starting point for studies making statistical arguments linking these birth defects to specific …

Development Of A Genetic Marker To Differentiate Between Pulex Irritans And Pulex Simulans, Colby Russell Kearl

Undergraduate Honors Capstone Projects

Pulex irritans and Pulex simulans are zoonotic flea vectors of plague and other infectious diseases. P. irritans have historically been known to use carnivores as a host, while P. simulans primarily parasitizes omnivores. To fully understand arthropod-borne infectious disease transmissibility and potential for geographical spread, it is important to differentiate between these two flea species. Traditional taxonomy uses the flea's male morphological features to distinguish species. There are no observable morphological differences between the female P. irritans and P. simulans. Molecular markers of the internal transcribed spacer regions (ITS) have been successfully used in other insect organisms to differentiate …

Spectrum Noise Exposures - Analysis And Control Implementation, Kyle Lynn Naylor

Undergraduate Honors Capstone Projects

The Dee Glen Smith spectrum at Utah State University has a reputation of having one of the loudest student sections in the nation. For years, students have taken pride in creating a home court advantage by creating an extremely rowdy and loud atmosphere. Many would agree that this is what makes USU basketball so special.

Elevated noise levels, however, have the potential of creating a health hazard to both employees and spectators. Elevated noise levels can cause negative acute effects such as headache, dizziness, nausea, and tinnitus (ringing in the ears). The most likely acute affects that students, employees, and …

Modulation Of Neuronal R-Type Ca2+ Channels (Cav2.3) By G Protein-Coupled Receptors, Lauren S. Page

Undergraduate Honors Capstone Projects

Neuronal R-type Ca²⁺ channels (Ca_v2.3) are expressed at high concentrations within the cortex, hippocampus and striatal regions of the brain, where they participate in neuronal excitability and synaptic signaling. This pattern of expression may signify a connection between Ca_v2.3 channel function and neurological disorders such as Parkinson's Disease (PD) and Huntington's Disease (HD). Both of these disorders are caused by inadequate secretion of the neurotransmitter dopamine within the striatum. The first step in characterizing the potential importance of Ca_v2.3 in PD and HD is to examine its modulation by G-protein-coupled dopamine receptors. Specifically, …

Thermal Microhabitat Preference Of The Common Side-Blotched Lizard, Uta Stansburiana, Maria Goller

Undergraduate Honors Capstone Projects

Ectotherms are especially susceptible to changing temperature conditions within their environment. To limit temperature fluctuations they must behaviorally regulate body temperature by moving between microhabitats of different ambient temperatures. By actively selecting specific substrate temperatures within a heterogeneous thermal environment, an individual could attain preferred body temperature and approach internal thermal homeostasis for periods of time. Ambient temperature dependence should thus force an individual to select those microhabitats that present optimal thermal conditions. Because dynamic thermal microhabitat structure is difficult to assess, the extent to which lizards employ behavioral thermoregulation is not well understood. Therefore, there is a need to …

Apoptotic And Epigenetic Induction Of Embryo Failure Following Somatic Cell Nuclear Transfer, Aaron Patrick Davis

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The cloning of domestic species has tremendous potential, as the technology can be used in selective breeding, conservation, and the production of transgenic animals. The technique of cloning involves the transplant of DNA from a cell to a recipient gamete. Following transfer to a surrogate, the cloned embryo may successfully complete development to a live offspring. Despite intensive research, the success rate of cloning remains prohibitively low, and the potential benefits of cloning have not yet been realized. Embryos produced from cloning suffer from high rates of embryo degradation, implantation failure, and abortion. The goal of this dissertation research project …

Winter Ecology Of Waterfowl On The Great Salt Lake, Utah, Josh L. Vest

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

I designed a suite of studies in coordination with Utah Division of Wildlife Resources (UDWR) to evaluate waterfowl use of the GSL in winter and ecological aspects associated with GSL use. These studies provided insight into key information gaps previously identified by UDWR regarding management of GSL resources. Population surveys indicated total duck abundance was low when GSL surface elevations were low and wetland resources diminished because of persistent drought in the system. Also, ducks appear to use hypersaline parts of GSL more when freshwater habitats are limited from either drought or ice conditions. Common goldeneye, northern shoveler, and green-winged …

Fatty Acid Induced Insulin Resistance In The Brain, Hyoung Il Oh

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The prevalence of obesity is rapidly increasing; it is now one of the most serious public health problems worldwide. Obesity is thought to reflect the interaction between genetics and modern life style. In particular, high fat diets (HFD) are considered as a major contributing factor to the development of obesity and type 2 diabetes as well as other metabolic disorders such as cardiovascular disease, Alzheimer’s disease and some types of cancer. Recently, it has been suggested that insulin actions in the brain are important in the regulation of energy homeostasis and peripheral metabolism.

With the support of USTAR (The Utah …

Study Of Genes Relating To Degradation Of Aromatic Compounds And Carbon Metabolism In Mycobacterium Sp. Strain Kms, Chun Zhang

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Polycyclic aromatic hydrocarbons are produced from incomplete combustion of organic materials by human or natural activities. These polycyclic aromatic hydrocarbons are classified as pollutants because of their toxic, mutagenic, and carcinogenic characteristics. Mycobacterium sp. strain KMS, isolated from a contaminated soil, grows on the model polycyclic aromatic hydrocarbon, pyrene, with its degradation to water and carbon dioxide. This study locates genes on the chromosome and plasmids of isolate KMS relating to pyrene degradation, elucidates the influence of other carbon sources available in the habitats of isolate KMS on degradation of pyrene, and deduces possible metabolic pathways used by isolate …

Novel Aminoglycosides: Bioactive Properties And Mechanism Of Action, Sanjib K. Shrestha

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

More than 90% of crop diseases are due to fungal infections, which globally cause enormous economic losses. Fungal infections in humans and animals have also become a serious concern, especially in immunocompromised individuals. However, only a few new fungicides have been introduced since the mid-1980s, and concerns with inconsistent and declining effectiveness due to resistance, environmental impacts, animal and human toxicity, and costs continue to challenge the use of available fungicides. There is a serious and persistent need for new antifungal agents that are more effective, eco-friendly, less toxic, and available at reasonable cost.

This study reveals two novel aminoglycosides, …