Biology Commons^™

Direct Interaction Of Flix And Flbd Is Required For Their Regulatory Activity In Caulobacter Crescentus, Zhaohui Xu, Rachel J. Dutton, James W. Gober

Biological Sciences Faculty Publications

Background: The temporal and spatial expression of late flagellar genes in Caulobacter crescentus is activated by the transcription factor FlbD and its partner trans-acting factor FliX. The physical interaction of these two proteins represents an alternative mechanism for regulating the activity of sigma(54) transcription factors. This study is to characterize the interaction of the two proteins and the consequences of the interaction on their regulatory activity. Results: FliX and FlbD form stable complexes, which can stand the interference of 2.65 M NaCl. The stability of FliX and FlbD was affected by the co-existence of each other. Five FliX mutants (R71A, …

A General Life History Theory For Effects Of Caloric Restriction On Health Maintenance, Chen Hou, Kendra Bolt, Aviv Bergman

Biological Sciences Faculty Research & Creative Works

Background: Caloric restriction (CR) has been shown to keep organisms in a relatively youthful and healthy state compared to ad libitum fed counterparts, as well as to extend the lifespan of a diverse set of organisms. Several attempts have been made to understand the underlying mechanisms from the viewpoint of energy tradeoffs in organisms' life histories. However, most models are based on assumptions which are difficult to justify, or are endowed with free-adjusting parameters whose biological relevancy is unclear.

Results: In this paper, we derive a general quantitative, predictive model based on physiological data for endotherms. We test the hypothesis …

Functional Divergence Of Glycoprotein Hormone Receptors, Mihael Freamat, Stacia A. Sower

New Hampshire Agricultural Experiment Station Publications

Two lamprey glycroprotein hormone receptors (lGpH-R I and II) highly similar with gnathostome GpH-Rs were cloned from sea lamprey testes and thyroid, respectively. Vertebrate glycoprotein protein receptors have a large extracellular domain (ED) containing a leu rich domain (LRD) linked to a rhodopsin-like transmembrane domain (TMD) through a highly divergent linker region (signal specificity domain, SSD or 'hinge' region) and a third major segment, the intracellular domain. To determine the potential roles of the different domains in the activation of the receptor following ligand-receptor binding, functional assays were performed on lGpH-R I/rat luteinizing hormone (LH)-R domain swapped chimeric receptors. These …

Geologic Composition Influences Distribution Of Microbiotic Crusts In The Mojave And Colorado Deserts At The Regional Scale, Rebecca E. Drenovsky, Nicole Pietrasiak, Jeffrey R. Johansen

Biology

Abiotic and biotic factors influencing distribution of microbiotic crusts within hot deserts, such as the Mojave and Colorado Deserts, are poorly known. Our objective was to examine microbiotic crust distribution with reference to soil and parent material characteristics as well as plant functional groups in wilderness areas of Joshua Tree National Park (JTNP). A total of 75 sites were visually assessed for crust abundance and plant community composition; soil physical and chemical factors also were measured. Microbiotic crusts of JTNP, in particular lichen and moss crusts, were not as well-developed or as widely distributed as in other arid regions of …

The Cell Biology Of Multi-Nucleated Giant Cell Formation, Johnathan L. Bartee

Theses

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Generation Of Transgenic Medicago Sativa Overexpressing "Osmotin-Chitinase" Gene Chimera, Jahnavi Reddy Kancharla

Masters Theses & Specialist Projects

Medicago is widely used as a forage crop. It is often susceptible to various pathogenic infections and exhibits low growth in drought and extreme climatic conditions. In the current study, a strategy was developed for over-expressing an “Osmotin-Chitinase” gene chimera in transgenic Medicago that could potentially confer resistance to different biotic and abiotic stresses. Seed germination of several cultivars of Medicago (M. sativa ssp. sativa, M. sativa ssp. falcata, M. sativa ssp. caerulea, M. truncatula, and M. Rugosa) was tested to determine the cultivars with good germination rates. Among these, M. sativa ssp. sativa showed an …

Drosophila Model For Fetal Alcohol Syndrome Disorders: Role For The Insulin Pathway, Rachael L. French, K D. Mcclure, U Heberlein

Faculty Publications, Biological Sciences

Prenatal exposure to ethanol in humans results in a wide range of developmental abnormalities, including growth deficiency, developmental delay, reduced brain size, permanent neurobehavioral abnormalities and fetal death. Here we describe the use of Drosophila melanogaster as a model for exploring the effects of ethanol exposure on development and behavior. We show that developmental ethanol exposure causes reduced viability, developmental delay and reduced adult body size. We find that flies reared on ethanol-containing food have smaller brains and imaginal discs, which is due to reduced cell division rather than increased apoptosis. Additionally, we show that, as in mammals, flies reared …

Using Portfolio Theory To Assess Tradeoffs Between Return From Natural Capital And Social Equity Across Space, Benjamin S. Halpern, Crow White, Sarah E. Lester, Christopher Costello, Steven D. Gaines

Biological Sciences

Spatial variance in returns from natural resources, driven by resource dynamics and regulations, can have strong consequences for equitable delivery of value to individuals and communities. Yet resource management models implicitly weight returns equally across space, even when space is explicitly included in model dynamics and policy. Here we translate financial portfolio theory from the temporal to spatial realm and use it to quantify the inherent tradeoff between resource returns and social equity, defined as a more uniform distribution of resource value across space. We illustrate this approach with a marine case study of the Channel Islands, California, USA. Depending …

Distinct Microbiome In Pouchitis Compared To Healthy Pouches In Ulcerative Colitis And Familial Adenomatous Polyposis, Garrett C. Zella, Elizabeth J. Hait, Tiffany Glavan, Dirk Gevers, Doyle V. Ward, Christopher L. Kitts, Joshua R. Korzenik

Biological Sciences

Background: Pouchitis occurs in up to 50% of patients with ulcerative colitis (UC) undergoing ileal pouch anal anastomosis (IPAA). Pouchitis rarely occurs in patients with familial adenomatous polyposis (FAP) who undergo IPAA. Our aim was to compare mucosal and luminal flora in patients with UC-associated pouchitis (UCP), healthy UC pouches (HUC), and healthy FAP pouches (FAP).

Methods: Nineteen patients were enrolled in thi s cross-sectional study (nine UCP, tl1ree HUC, seven FAP). Patie nts with active pouchitis were identified using the Pouchitis Disease Activity Index (PDAI). Ileal pouch mucosal biopsies and fecal samples were analyzed with a 16S rDNA-based terminal …

Neuronostatin Acts In Brain To Biphasically Increase Mean Arterial Pressure Through Sympatho-Activation Followed By Vasopressin Secretion: The Role Of Melanocortin Receptors, Gina L.C. Yosten, Alicia T. Pate, Willis K. Samson

Biological Sciences Faculty Research & Creative Works

Neuronostatin is a recently described neuropeptide that is derived from the somatostatin preprohormone. We have shown previously that neuronostatin led to a biphasic, dose-related increase in mean arterial pressure when injected into the lateral cerebroventricle of adult, male rats. Because neuronostatin depolarized both magnocellular and parvocellular, paraventricular nucleus neurons in hypothalamic slice preparations, we hypothesized that neuronostatin elevated mean arterial pressure first by stimulating sympathetic nervous system activity followed by the release of a pressor hormone, specifically vasopressin. We found that the first phase of neuronostatin-induced increase in mean arterial pressure was reversed by pretreatment with phentolamine, indicating that phase …

Role Of The Mar-Sox-Rob Regulon In Regulating Outer Membrane Porin Expression, Lon Chubiz, Christopher Rao

Biology Department Faculty Works

Multiple factors control the expression of the outer membrane porins OmpF and OmpC in Escherichia coli. In this work, we investigated the role of the mar-sox-rob regulon in regulating outer membrane porin expression in response to salicylate. We provide both genetic and physiological evidence that MarA and Rob can independently activate micF transcription in response to salicylate, leading to reduced OmpF expression. MarA was also found to repress OmpF expression through a MicF-independent pathway. In the case of OmpC, we found that its transcription was moderately increased in response to salicylate. However, this increase was independent of MarA and Rob. …

Cuttlefish Learning Efficiency In A Food Retrieval Task, Jasmine Schonwald

Biology Theses

Class Cephalopoda is thought to contain the most intelligent invertebrates thus far discovered. It has been found that cuttlefish have the capacity for learning (Boal et al. 2000, Darmillaq et al. 2003, Darmillaq et al 2006, Graindorge et al., 2006; Karson, Boal and Hanlon, 2003). It has also been shown that cuttlefish can navigate in sophisticated ways, such as within a maze (Graindorge, et al., 2006; Karson, Boal and Hanlon, 2003). The goal of this experiment is to determine the correlation between learning and navigation in cuttlefish. Cuttlefish were placed in an oval tank divided into …

Developing Mechanisms For The Transfer And/Or Adjustment Of Rock Lobster Shares Between Sectors In Western Australia And South Australia, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

The Assembly Of Ecological Communities Inferred From Taxonomic And Functional Composition, Eric R. Sokol, E. F. Benfield, Lisa K. Belden, H. Maurice Valett

Biological Sciences Faculty Publications

Among-site variation in metacommunities (beta diversity) is typically correlated with the distance separating the sites (spatial lag). This distance decay in similarity pattern has been linked to both niche-based and dispersal-based community assembly hypotheses. Here we show that beta diversity patterns in community composition, when supplemented with functional-trait information, can be used to diagnose assembly processes. First, using simulated data, we show how the relationship between distance decay patterns in taxonomic and functional measures of community composition can be used to predict the influence of a given trait on community assembly. We then use the patterns generated by the simulation …

Thinking Outside The Channel: Modeling Nitrogen Cycling In Networked River Ecosystems, Ashley M. Helton, Geoffrey C. Poole, Judy L. Meyer, Wilfred M. Wollheim, Bruce J. Peterson, Patrick J. Mulholland, Emily S. Bernhardt, Jack Arthur Stanford, Clay Arango, Linda R. Ashkenas, Lee W. Cooper, Walter K. Dodds, Stanley V. Gregory, Robert O. Hall Jr., Stephen K. Hamilton, Sherri L. Johnson, William H. Mcdowell, Jody D. Potter, Jennifer L. Tank, Suzanne M. Thomas, H. Maurice Valett, Jackson R. Webster, Lydia Zeglin

Biological Sciences Faculty Publications

Agricultural and urban development alters nitrogen and other biogeochemical cycles in rivers worldwide. Because such biogeochemical processes cannot be measured empirically across whole river networks, simulation models are critical tools for understanding river-network biogeochemistry. However, limitations inherent in current models restrict our ability to simulate biogeochemical dynamics among diverse river networks. We illustrate these limitations using a river-network model to scale up in situ measures of nitrogen cycling in eight catchments spanning various geophysical and land-use conditions. Our model results provide evidence that catchment characteristics typically excluded from models may control river-network biogeochemistry. Based on our findings, we identify important …

Effects Of Soil Biota From Different Ranges On Robinia Invasion: Acquiring Mutualists And Escaping Pathogens, Ragan M. Callaway, Eulogio J. Bedmar, Kurt O. Reinhart, Cinta Gómez Silvan, John Klironomos

Biological Sciences Faculty Publications

The net effects of soil biota on exotic invaders can be variable, in part, because net effects are produced by many interacting mutualists and antagonists. Here we compared mutualistic and antagonistic biota in soils collected in the native, expanded, and invasive range of the black locust tree, Robinia pseudoacacia. Robinia formed nodules in all soils with a broad phylogenetic range of N-fixing bacteria, and leaf N did not differ among the different sources of soil. This suggests that the global expansion of Robinia was not limited by the lack of appropriate mutualistic N-fixers. Arbuscular mycorrhizal fungi (AMF) from the …

Modular Inheritance Of Color Pattern In Lake Malawi Cichlid Fishes, Jennifer Roscoe

Renée Crown University Honors Thesis Projects - All

This study attempts to elucidate the mechanisms that underlie the evolution of pigmentation patterns among Lake Malawi cichlids. For decades researchers have sought to provide a theoretical model of cichlid speciation based on the evolution of male nuptial patterns and female preferences, yet our understanding of how color patterns change is limited. Here, we performed exploratory statistical analyses on an F₂ hybrid population to characterize the inheritance of color traits. Specifically, we sought to uncover patterns of modularity and levels of integration among color traits. Because cichlids are sexually dimorphic we did our analyses on males and females separately. …

The High Cost Of Cheap Coal; Why Can't We Move To Renewable Energy, Cameron Dale Bartlett

Undergraduate Honors Capstone Projects

This article addresses the historic and current use of coal as the main source of electric power throughout the United States. Coal powered power plants remain an important part of the history and industrialization of the United States, even though there are many detrimental health and environmental impacts associated with its use. A slowly growing trend has been emerging with research on and use of renewable energy to replace fossil fuels, such as coal. Greater public awareness and involvement will help drive the slowly emerging use of renewable energy. This article looks at the current barriers that are prohibiting the …

The Role Of Phosphoinositide Signaling In Breast Cancer Metastasis Suppressor 1-Mediated Metastasis Suppression Of Human Breast Carcinoma Cells, Sitaram Harihar

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Breast cancer is the most common non-skin cancer in women and the second most common cause of cancer-related death in U.S. women. Despite numerous advances in treatment strategies against breast cancer, the presence of undetected distant metastasis of the primary tumor remains the main cause of mortality. Current screening and detection methods such as mammograms are simply not sensitive enough to detect formation of metastasis. Further, currently available therapies against metastatic breast cancer do not provide a complete cure for the disease. Thus, understanding the biology and molecular factors involved in cancer metastasis will help aid in preventing the onset …

Characterization And Application Of Dynamic In Vitro Models Of Human Airway, Hemangkumar J. Patel

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In recent years, respiratory diseases have emerged as a leading cause of mortality across the globe. In the United States alone respiratory diseases are the fourth leading cause of deaths annually. Moreover, with the rapid increase of industrialization and urbanization, the occurrences of respiratory diseases are expected to remain high with strong chances of increasing in the future. To ameliorate the epidemic of respiratory disease, it is first important to understand its underlying mechanisms.

Respiratory research studies in animals have elucidated the chronological order of the pathological events and systemic responses inside the lung, but understanding the response of individual …

St. John’S Wort And Artemisia Extracts Modulate Adipocyte Development And Function, Zhaleh Amini

Honors Capstones

No abstract provided.

The Function And Mechanism Of Rrf-1 In Antiviral Rnai In C. Elegans, Amanda Lynn Callegan

Honors Capstones

No abstract provided.

Effect Of The Trna Gene Tv(Uac)D On The Transcriptional Regulation Of The Neighboring Cis1 Gene In Saccharomyces Cerevisiae, Jessica Rosselot

Honors Capstones

No abstract provided.

P53-Independent Apoptosis And Autophagy As A Result Of Rnai Knockdown Of Nopp140 In Drosophila Melanogaster, Courtney Mumphrey

Honors Capstones

No abstract provided.

Influence Of Agricultural Stream Habitat Alterations On Mosquitoes And Amphibians: Patterns, Processes, And Predictions, Julia Sonn

Biology Theses

Changes to stream structure, riparian habitat, and water quality can alter ecosystem dynamics, resulting in an increase in mosquitoes, while weakening populations of amphibians. Therefore, it is necessary to understand how these components are affected by agricultural practices so that mosquito populations can be controlled and aquatic organisms can be protected. In this study, I examined changes in stream structure by measuring geomorphology at three riparian habitats that were anthropogenically impacted to varying degrees. I also compared water quality between the habitats. Mosquitoes and amphibians were surveyed at each riparian habitat, identified to species, and abundances were compared. Stream structure …

Sponges Of The Caribbean: Linking Sponge Morphology And Associated Bacterial Communities, Ericka Ann Poppell

Master's Theses

The ecological and evolutionary relationship between sponges and their symbiotic microflora remains poorly understood, which limits our ability to understand broad scale patterns in benthic-pelagic coupling on coral reefs. Previous research classified sponges into two different categories of sponge microbial associations: High Microbial Abundance (HMA) and Low Microbial Abundance (LMA) sponges. Choanocyte chamber morphology and density was characterized in representatives of HMA and LMA sponges using scanning electron microscopy from freeze-fractured tissue. Denaturing Gradient Gel Elextrophoresis was used to examine taxonomic differences among the bacterial communities present in a variety of tropical sponges. The results supported the hypothesis that choanocyte …

Cloning And Characterization Of The Promoter For The Ovarian-Specific Inhibin Alpha Gene Form Zebrafish (Danio Rerio), Caitlin Marie Ament

Theses, Dissertations and Culminating Projects

Inducible cAMP Early Repressor (ICER) is an important regulator of folliculogenesis as it regulates the nuclear response to gonadotropins in ovarian tissue. Studies in mice demonstrated a 3.0 kb region of the alpha inhibin (INHa) promoter is a site of transcriptional activation in response to follicle-stimulating hormone (FSH). The purpose of this study was to isolate and construct an ICER transgene and characterize the putative 3.0 kb promoter region of the ovarian-specific INHa gene in Danio rerio (zebrafish).

The sequences for ICER and the INHa promoter in zebrafish were identified using BLAST searches with the known sequences from mouse and …

Effect Of Black Tea Extract On Herpes Simplex Virus Type 1 Propagation, Anthony Cantatore

Theses, Dissertations and Culminating Projects

The purpose of this investigation was to determine if flavanol compounds, called theaflavins, found only in black tea and black tea extract (BTE) could inhibit herpes simplex virus type 1 (HSV-1) infection in cultured A549 human epithelial cells. The effect of BTE both on A549 cultured cells and HSV-1 was assessed by using phase contrast and fluorescent microscopy, as well as trypan blue and WST-1 assays and gel electrophoresis; the effect of infectivity was quantified by plaque assays and compared using a spectrophotometer to examine the extracted DNA and PCR products. Results indicated that HSV-1 did not cause cytopathic effects …

Combining Bioinformatics And Chemical Biological Approaches To The Study Of Signaling Pathways In Parasitic Nematodes, William R. De Martini

Theses, Dissertations and Culminating Projects

Lymphatic filariasis (elephantitis) is a disfiguring disease caused by thread-like nematodes. This disease affects the lives of over 120 million people and over one billion people are at risk for infection in endemic regions. Drugs used to treat this disease suffer from toxicity and emerging resistance and new therapies need to be identified. Our laboratory has been studying the filarial parasite, Brugia malayi (B. malayi), one of the causative agents of this disease. The laboratory is focused on the study of critical protein kinase signaling pathways, necessary for parasite protective anti-oxidative responses, as potential therapeutic targets. We have previously determined, …

Modified Green Tea Polyphenol, Egcg-Ester, As A Novel Approach To Inhibit Herpes Simplex Virus Infections, Aline Moraes De Oliveira

Theses, Dissertations and Culminating Projects

HSV-1 DNA with the green fluorescent protein (GFP) introduced into the UL46 gene was used to investigate the effects of green tea polyphenols on the virus. Two different green tea extracts have been isolated and modified, EGCG and EGCG-ester. These extracts with concentration of 12.5, 25, 50, 75 and 100uM were used to determine its effects on cell morphology, cell proliferation and cell viability. The results indicated that the maximum non-toxic concentration is 75uM for both polyphenols. GFP expression, DAPI DNA stain and Lysosome activation stain were also used to observe the morphological, and cellular changes in the infected cells. …