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Articles 151 - 180 of 1064
Full-Text Articles in Biology
Truncation Of The Mrp20 Protein Reveals New Ribosome‐Assembly Subcomplex In Mitochondria, Jasvinder Kaur, Rosemary A. Stuart
Truncation Of The Mrp20 Protein Reveals New Ribosome‐Assembly Subcomplex In Mitochondria, Jasvinder Kaur, Rosemary A. Stuart
Biological Sciences Faculty Research and Publications
Mitochondrial ribosomal protein 20 (Mrp20) is a component of the yeast mitochondrial large (54S) ribosomal subunit and is homologous to the bacterial L23 protein, located at the ribosomal tunnel exit site. The carboxy‐terminal mitochondrial‐specific domain of Mrp20 was found to have a crucial role in the assembly of the ribosomes. A new, membrane‐bound, ribosomal‐assembly subcomplex composed of known tunnel‐exit‐site proteins, an uncharacterized ribosomal protein, MrpL25, and the mitochondrial peroxiredoxin (Prx), Prx1, accumulates in an mrp20ΔC yeast mutant. Finally, data supporting the idea that the inner mitochondrial membrane acts as a platform for the ribosome assembly process are discussed.
Mucosal Immunization With A Staphylococcus Aureus Isda-Cholera Toxin A2/B Chimera Induces Antigen-Specific Th2-Type Responses In Mice, Britni M. Arlian, Juliette Tinker
Mucosal Immunization With A Staphylococcus Aureus Isda-Cholera Toxin A2/B Chimera Induces Antigen-Specific Th2-Type Responses In Mice, Britni M. Arlian, Juliette Tinker
Biology Faculty Publications and Presentations
Staphylococcus aureus is a leading cause of opportunistic infection worldwide and a significant public health threat. The iron-regulated surface determinant A (IsdA) adhesin is essential for S. aureus colonization on human nasal epithelial cells and plays an important role in iron acquisition and resistance to human skin defenses. Here we investigated the murine immune response to intranasal administration of a cholera toxin (CT) A2/B chimera containing IsdA. Plasmids were constructed to express the IsdA-CTA2/B chimera and control proteins in E. coli. Proper construction of the chimera was verified by SDS-PAGE, western blot, GM1 ELISA, and …
Use Of Optimal Control Models To Predict Treatment Time For Managing Tick-Borne Disease, Holly D. Gaff, Elsa Schaefer, Suzanne Lenhart
Use Of Optimal Control Models To Predict Treatment Time For Managing Tick-Borne Disease, Holly D. Gaff, Elsa Schaefer, Suzanne Lenhart
Biological Sciences Faculty Publications
Tick-borne diseases have been on the rise recently, and correspondingly, there is an increased interest in implementing control measures to decrease the risk. Optimal control provides an ideal tool to identify the best method for reducing risk while accounting for the associated costs. Using a previously published model, a variety of frameworks are assessed to identify the key factors influencing mitigation strategies. The level and duration of tick-reducing efforts are key metrics for understanding the successful reduction in tick-borne disease incidence. The results show that the punctuated nature of the tick's life history plays a critical role in reducing risk …
Biotic Resistance Via Granivory: Establishment By Invasive, Naturalized, And Native Asters Reflects Generalist Preference, Dean E. Pearson, Ragan M. Callaway, John L. Maron
Biotic Resistance Via Granivory: Establishment By Invasive, Naturalized, And Native Asters Reflects Generalist Preference, Dean E. Pearson, Ragan M. Callaway, John L. Maron
Biological Sciences Faculty Publications
Escape from specialist natural enemies is frequently invoked to explain exotic plant invasions, but little attention has been paid to how generalist consumers in the recipient range may influence invasion. We examined how seed preferences of the widespread generalist granivore Peromyscus maniculatus related to recruitment of the strongly invasive exotic Centaurea stoebe and several weakly invasive exotics and natives by conducting laboratory feeding trials and seed addition experiments in the field. Laboratory feeding trials showed that P. maniculatus avoided consuming seeds of C. stoebe relative to the 12 other species tested, even when seeds of alternative species were 53–94% smaller …
Auditory Selectivity For Acoustic Features That Confer Species Recognition In The Túngara Frog, Lisa A. Mangiamele, Sabrina S. Burmeister
Auditory Selectivity For Acoustic Features That Confer Species Recognition In The Túngara Frog, Lisa A. Mangiamele, Sabrina S. Burmeister
Biological Sciences: Faculty Publications
In anurans, recognition of species-specific acoustic signals is essential to finding a mate. In many species, behavioral tests have elucidated which acoustic features contribute to species recognition, but the mechanisms by which the brain encodes these species-specific signal components are less well understood. The túngara frog produces a 'whine' mating call that is characterized by a descending frequency sweep. However, much of the signal is unnecessary for recognition, as recognition behavior can be triggered by a descending two-tone step that mimics the frequency change in a portion of the whine. To identify the brain regions that contribute to species recognition …
Activation Of Jnk Signaling Mediates Amyloid-Ss- Dependent Cell Death, Meghana Tare, Rohan Modi, Jaison Nainaparampil, Oorvashi Roy Puli, Shimpi Bedi, Pedro Fernandez-Funez, Madhuri Kango-Singh, Amit Singh
Activation Of Jnk Signaling Mediates Amyloid-Ss- Dependent Cell Death, Meghana Tare, Rohan Modi, Jaison Nainaparampil, Oorvashi Roy Puli, Shimpi Bedi, Pedro Fernandez-Funez, Madhuri Kango-Singh, Amit Singh
Biology Faculty Publications
Background: Alzheimer's disease (AD) is an age related progressive neurodegenerative disorder. One of the reasons for Alzheimer's neuropathology is the generation of large aggregates of Aß42 that are toxic in nature and induce oxidative stress, aberrant signaling and many other cellular alterations that trigger neuronal cell death. However, the exact mechanisms leading to cell death are not clearly understood.
Methodology/Principal Findings: We employed a Drosophila eye model of AD to study how Aß42 causes cell death. Misexpression of higher levels of Aß42 in the differentiating photoreceptors of fly retina rapidly induced aberrant cellular phenotypes and cell death. We found that …
Single Molecule Analysis Of The Arabidopsis Fra1 Kinesin Shows That It Is A Functional Motor Protein With Unusually High Processivity, Chuanmei Zhu, Ram Dixit
Single Molecule Analysis Of The Arabidopsis Fra1 Kinesin Shows That It Is A Functional Motor Protein With Unusually High Processivity, Chuanmei Zhu, Ram Dixit
Biology Faculty Research
The Arabidopsis FRA1 kinesin contributes to the organization of cellulose microfibrils through an unknown mechanism. The cortical localization of this kinesin during interphase raises the possibility that it transports cell wall-related cargoes along cortical microtubules that either directly or indirectly influence cellulose microfibril patterning. To determine whether FRA1 is an authentic motor protein, we combined bulk biochemical assays and single molecule fluorescence imaging to analyze the motor properties of recombinant, GFP-tagged FRA1 containing the motor and coiled-coil domains (designated as FRA1(707)–GFP). We found that FRA1(707)–GFP binds to microtubules in an ATP-dependent manner and that its ATPase activity is dramatically stimulated …
Influence Of Earli1‐Like Genes On Flowering Time And Lignin Synthesis Of Arabidopsis Thaliana, Y. Shi, X. Zhang, Z.-Y. Xu, C. Zhang, Michael Schläppi, Z.-Q. Xu
Influence Of Earli1‐Like Genes On Flowering Time And Lignin Synthesis Of Arabidopsis Thaliana, Y. Shi, X. Zhang, Z.-Y. Xu, C. Zhang, Michael Schläppi, Z.-Q. Xu
Biological Sciences Faculty Research and Publications
EARLI1 encodes a 14.7 kDa protein in the cell wall, is a member of the PRP (proline‐rich protein) family and has multiple functions, including resistance to low temperature and fungal infection. RNA gel blot analyses in the present work indicated that expression of EARLI1‐like genes, EARLI1, At4G12470 and At4G12490, was down‐regulated in Col‐FRI‐Sf2 RNAi plants derived from transformation with Agrobacteriumstrain ABI, which contains a construct encoding a double‐strand RNA targeting 8CM of EARLI1. Phenotype analyses revealed that Col‐FRI‐Sf2 RNAi plants of EARLI1 flowered earlier than Col‐FRI‐Sf2 wild‐type plants. The average …
Analysis Of Migration Models Of Biogeography-Based Optimization Using Markov Theory, Haiping Ma, Daniel J. Simon
Analysis Of Migration Models Of Biogeography-Based Optimization Using Markov Theory, Haiping Ma, Daniel J. Simon
Electrical and Computer Engineering Faculty Publications
Biogeography-based optimization (BBO) is a new evolutionary algorithm inspired by biogeography, which involves the study of the migration of biological species between habitats. Previous work has shown that various migration models of BBO result in significant changes in performance. Sinusoidal migration models have been shown to provide the best performance so far. Motivated by biogeography theory and previous results, in this paper a generalized sinusoidal migration model curve is proposed. A previously derived BBO Markov model is used to analyze the effect of migration models on optimization performance, and new theoretical results which are confirmed with simulation results are obtained. …
Self-Assembly Of Escherichia Coli Mutl And Its Complexes With Dna, Anita Niedziela-Majka, Nasib K. Maluf, Edwin Antony, Timothy M. Lohman
Self-Assembly Of Escherichia Coli Mutl And Its Complexes With Dna, Anita Niedziela-Majka, Nasib K. Maluf, Edwin Antony, Timothy M. Lohman
Biological Sciences Faculty Research and Publications
The Escherichia coli MutL protein regulates the activity of several enzymes, including MutS, MutH, and UvrD, during methyl-directed mismatch repair of DNA. We have investigated the self-association properties of MutL and its binding to DNA using analytical sedimentation velocity and equilibrium. Self-association of MutL is quite sensitive to solution conditions. At 25 °C in Tris at pH 8.3, MutL assembles into a heterogeneous mixture of large multimers. In the presence of potassium phosphate at pH 7.4, MutL forms primarily stable dimers, with the higher-order assembly states suppressed. The weight-average sedimentation coefficient of the MutL dimer in this buffer (s̅ …
Limits To Sexual Reproduction In Geothermal Bryophytes, Sarah M. Eppley, Todd N. Rosenstiel, Camille Brianne Graves, Estefanía Llaneza García
Limits To Sexual Reproduction In Geothermal Bryophytes, Sarah M. Eppley, Todd N. Rosenstiel, Camille Brianne Graves, Estefanía Llaneza García
Biology Faculty Publications and Presentations
Previous research suggests that while sexual reproduction generally increases with environmental stress it may decrease with extreme stress, at the edge of eukaryotic life. In this study, we explored the limits to sexual reproduction in an extremophile, bryophyte system to ultimately understand the processes that limit sexual reproduction. We used field data from geothermal sites at Lassen Volcanic National Park, California, to demonstrate that sexual reproduction, as measured by the number of sporophytes per shoot, decreases with increasing environmental stress. We found that the number of sporophytes per shoot is positively correlated with distance from geothermal features. When Pohlia nutans …
The Deg/Enac Protein Mec-10 Regulates The Transduction Channel Complex In Caenorhabditis Elegans Touch Receptor Neurons, Jóhanna Árnadóttir, Robert O'Hagan, Yushu Chen, Miriam B. Goodman, Martin Chalfie
The Deg/Enac Protein Mec-10 Regulates The Transduction Channel Complex In Caenorhabditis Elegans Touch Receptor Neurons, Jóhanna Árnadóttir, Robert O'Hagan, Yushu Chen, Miriam B. Goodman, Martin Chalfie
Department of Biology Faculty Scholarship and Creative Works
Gentle touch sensation in Caenorhabditis elegans is mediated by the MEC-4/MEC-10 channel complex, which is expressed exclusively in six touch receptor neurons (TRNs). The complex contains two pore-forming subunits, MEC-4 and MEC-10, as well as the accessory subunits MEC-2, MEC-6, and UNC-24. MEC-4 is essential for channel function, but beyond its role as a pore-forming subunit, the functional contribution of MEC-10 to the channel complex and to touch sensation is unclear.Weaddressed this question using behavioral assays, in vivo electrophysiological recordings from TRNs, and heterologous expression of mutant MEC-10 isoforms. Animals with a deletion in mec-10 showed only a partial loss …
A Moderate Elevation Of Circulating Levels Of Igf-I Does Not Alter Erbb2 Induced Mammary Tumorigenesis, Robert K. Dearth, Isere Kuiatse, Yu-Fen Wang, Lan Liao, Susan G. Hilsenbeck, Powel H. Brown, Jianming Xu, Adrian V. Lee
A Moderate Elevation Of Circulating Levels Of Igf-I Does Not Alter Erbb2 Induced Mammary Tumorigenesis, Robert K. Dearth, Isere Kuiatse, Yu-Fen Wang, Lan Liao, Susan G. Hilsenbeck, Powel H. Brown, Jianming Xu, Adrian V. Lee
School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)
Background
Epidemiological evidence suggests that moderately elevated levels of circulating insulin-like growth factor-I (IGF-I) are associated with increased risk of breast cancer in women. How circulating IGF-I may promote breast cancer incidence is unknown, however, increased IGF-I signaling is linked to trastuzumab resistance in ErbB2 positive breast cancer. Few models have directly examined the effect of moderately high levels of circulating IGF-I on breast cancer initiation and progression. The purpose of this study was to assess the ability of circulating IGF-I to independently initiate mammary tumorigenesis and/or accelerate the progression of ErbB2 mediated mammary tumor growth.
Methods
We crossed heterozygous …
Estimating The Timing Of Early Eukaryotic Diversification With Multigene Molecular Clocks, Laura Wegener Parfrey, Daniel J.G. Lahr, Andrew H. Knoll, Laura A. Katz
Estimating The Timing Of Early Eukaryotic Diversification With Multigene Molecular Clocks, Laura Wegener Parfrey, Daniel J.G. Lahr, Andrew H. Knoll, Laura A. Katz
Biological Sciences: Faculty Publications
Although macroscopic plants, animals, and fungi are the most familiar eukaryotes, the bulk of eukaryotic diversity is microbial. Elucidating the timing of diversification among the more than 70 lineages is key to understanding the evolution of eukaryotes. Here, we use taxon-rich multigene data combined with diverse fossils and a relaxed molecular clock framework to estimate the timing of the last common ancestor of extant eukaryotes and the divergence of major clades. Overall, these analyses suggest that the last common ancestor lived between 1866 and 1679 Ma, consistent with the earliest microfossils interpreted with confidence as eukaryotic. During this interval, the …
Structure-Activity Relationships For The Interactions Of 2'- And 3'-(O)-(N-Methyl)Anthraniloyl-Substituted Purine And Pyrimidine Nucleotides With Mammalian Adenylyl Cyclases, Cibele Pinto, Gerald H. Lushington, Mark Richter, Andreas Gille, Jens Geduhn, Burkhard König, Tung-Chung Mou, Stephen R. Sprang, Roland Seifert
Structure-Activity Relationships For The Interactions Of 2'- And 3'-(O)-(N-Methyl)Anthraniloyl-Substituted Purine And Pyrimidine Nucleotides With Mammalian Adenylyl Cyclases, Cibele Pinto, Gerald H. Lushington, Mark Richter, Andreas Gille, Jens Geduhn, Burkhard König, Tung-Chung Mou, Stephen R. Sprang, Roland Seifert
Biological Sciences Faculty Publications
Membranous adenylyl cyclases (ACs) play a key role in signal transduction and are promising drug targets. In previous studies we showed that 2',3'-(O)-(N-methylanthraniloyl) (MANT)-substituted nucleotides are potent AC inhibitors. The aim of this study was to provide systematic structure-activity relationships for 21 (M)ANT-substituted nucleotides at the purified catalytic AC subunit heterodimer VC1:IIC2, the VC1:VC1 homodimer and recombinant ACs 1, 2 and 5. (M)ANT-nucleotides inhibited fully activated VC1:IIC2 in the order of affinity for bases hypoxanthine>uracil>cytosine>adenine∼guanine≫xanthine. Omission of a hydroxyl group at the 2' or 3'-position reduced inhibitor potency as did introduction of a γ-thiophosphate group or omission …
Physiological Trade-Offs In Self-Maintenance: Plumage Molt And Stress Physiology In Birds, Jamie M. Cornelius, Nicole Perfito, Richard Zann, Creagh W. Breuner, Thomas P. Hahn
Physiological Trade-Offs In Self-Maintenance: Plumage Molt And Stress Physiology In Birds, Jamie M. Cornelius, Nicole Perfito, Richard Zann, Creagh W. Breuner, Thomas P. Hahn
Biological Sciences Faculty Publications
Trade-offs between self-maintenance processes can affect life-history evolution. Integument replacement and the stress response both promote self-maintenance and affect survival in vertebrates. Relationships between the two processes have been studied most extensively in birds, where hormonal stress suppression is down regulated during molt in seasonal species, suggesting a resource-based trade-off between the two processes. The only species found to differ are the rock dove and Eurasian tree sparrow, at least one of which performs a very slow molt that may reduce resource demands during feather growth, permitting investment in the stress response. To test for the presence of a molt–stress …
Dynamic Characterization Of The Ikk:Κbα:Nfκb Negative Feedback Loop Using Real-Time Bioluminescence Imaging, Britney Moss
Dynamic Characterization Of The Ikk:Κbα:Nfκb Negative Feedback Loop Using Real-Time Bioluminescence Imaging, Britney Moss
All Theses and Dissertations (ETDs)
The transcription factor NF-κB is a pivotal regulator of mammalian cell function, modulating genes implicated in cellular stress responses, proliferation, differentiation, cell survival and apoptosis, as well as immune and inflammatory responses. Improper regulation of NF-κB signaling has been implicated in a myriad of human pathological disorders, including cardiovascular and neurodegenerative diseases, chronic inflammation, and various cancers. A key regulatory node within canonical NF-κB signaling is the IKK:NF-κB: IκBα negative feedback loop that plays a major role in regulating the strength and duration of NF-κB transcriptional activity. We have developed and characterized an unique bioluminescent reporter (κB5àIκBα-FLuc) …
Legacy Sediments In Streams - Effects On Nutrient Partitioning During Simulated Re-Suspension Events., Molly Sobotka
Legacy Sediments In Streams - Effects On Nutrient Partitioning During Simulated Re-Suspension Events., Molly Sobotka
Theses and Dissertations
Anthropogenic inputs of nutrients and sediment are a widespread problem in U.S. streams causing localized impairment and contributing to eutrophication of coastal habitats. Sediments and dissolved nutrients interact through diverse processes including ion exchange, sorption and biotic assimilation by particle-bound bacteria. This study examined the effects of sediment re-suspension on nutrient partitioning in lab microcosms using fine benthic matter collected from two Virginia Coastal Plain streams. Kimages Creek was recently restored following dam removal and was characterized by large deposits of legacy sediments. Courthouse Creek was characterized by sandy substrates typical of Coastal Plain streams. Sediment characteristics differed between the …
The Abundance And Infection Status Of Anopheles Spp. Mosquitoes At Three Sites In Loudoun County, Northern Virginia, Priya Krishnan
The Abundance And Infection Status Of Anopheles Spp. Mosquitoes At Three Sites In Loudoun County, Northern Virginia, Priya Krishnan
Theses and Dissertations
Malaria is a re-emerging infectious disease with approximately half of the world's population at risk. In the US, since the 1950’s the Center for Disease Control (CDC) has been reporting between 1,000 and 1,500 cases of malaria every year. A majority of these cases were among US travellers and were attributed to Plasmodium falciparum. In August 2002, two cases of human malaria due to Plasmodium vivax were reported in Loudoun County, Northern Virginia. The Center for Disease Control and Prevention concluded that these cases were acquired locally. This was because of an absence of other risk factors such as international …
Down-Regulation Of Krüppel-Like Factor-4 (Klf4) By Microrna-143/145 Is Critical For Modulation Of Vascular Smooth Muscle Cell Phenotype By Transforming Growth Factor-Β And Bone Morphogenetic Protein 4, Brandi N. Davis-Dusenbery, Mun Chun Chan, Kelsey E. Reno, Alexandra S. Weisman, Matthew D. Layne, Giorgio Lagna, Akiko Hata
Down-Regulation Of Krüppel-Like Factor-4 (Klf4) By Microrna-143/145 Is Critical For Modulation Of Vascular Smooth Muscle Cell Phenotype By Transforming Growth Factor-Β And Bone Morphogenetic Protein 4, Brandi N. Davis-Dusenbery, Mun Chun Chan, Kelsey E. Reno, Alexandra S. Weisman, Matthew D. Layne, Giorgio Lagna, Akiko Hata
Biology
In the postnatal vasculature, fully differentiated and quiescent vascular smooth muscle cells (VSMCs) in a “contractile” phenotype are required for the normal regulation of vascular tone. The transforming growth factor-β (TGF-β) superfamily of growth factors (TGF-βs and bone morphogenetic proteins (BMPs)) are potent inducers of contractile phenotype and mediate (i) induction of contractile genes, and (ii) inhibition of VSMC growth and migration. Transcription of contractile genes is positively regulated by a regulatory DNA element called a CArG box. The CArG box is activated by the binding of serum response factor and its coactivators, myocardin (Myocd) or Myocd-related transcription factors (MRTFs). …
No Evidence Of Association Between Hiv-1 And Malaria In Populations With Low Hiv-1 Prevalence, Diego F. Cuadros, Adam J. Branscum, Gisela García-Ramos
No Evidence Of Association Between Hiv-1 And Malaria In Populations With Low Hiv-1 Prevalence, Diego F. Cuadros, Adam J. Branscum, Gisela García-Ramos
Biology Faculty Publications
BACKGROUND: The geographic overlap between HIV-1 and malaria has generated much interest in their potential interactions. A variety of studies have evidenced a complex HIV-malaria interaction within individuals and populations that may have dramatic effects, but the causes and implications of this co-infection at the population level are still unclear. In a previous publication, we showed that the prevalence of malaria caused by the parasite Plasmodium falciparum is associated with HIV infection in eastern sub-Saharan Africa. To complement our knowledge of the HIV-malaria co-infection, the objective of this work was to assess the relationship between malaria and HIV prevalence in …
Effect Of Variable Transmission Rate On The Dynamics Of Hiv In Sub-Saharan Africa, Diego F. Cuadros, Phillip H. Crowley, Ben Augustine, Sarah L. Stewart, Gisela García-Ramos
Effect Of Variable Transmission Rate On The Dynamics Of Hiv In Sub-Saharan Africa, Diego F. Cuadros, Phillip H. Crowley, Ben Augustine, Sarah L. Stewart, Gisela García-Ramos
Biology Faculty Publications
BACKGROUND: The cause of the high HIV prevalence in sub-Saharan Africa is incompletely understood, with heterosexual penile-vaginal transmission proposed as the main mechanism. Heterosexual HIV transmission has been estimated to have a very low probability; but effects of cofactors that vary in space and time may substantially alter this pattern.
METHODS: To test the effect of individual variation in the HIV infectiousness generated by co-infection, we developed and analyzed a mathematical sexual network model that simulates the behavioral components of a population from Malawi, as well as the dynamics of HIV and the co-infection effect caused by other infectious diseases, …
Comparative Genomics Of The Pathogenic Ciliate Ichthyophthirius Multifiliis, Its Free-Living Relatives And A Host Species Provide Insights Into Adoption Of A Parasitic Lifestyle And Prospects For Disease Control, Robert S. Coyne, Linda Hannick, Dhanasekaran Shanmugam, Jessica B. Hostetler, Daniel Brami, Vinita S. Joardar, Justin Johnson, Diana Radune, Irtisha Singh, Jonathan H. Badger, Ujjwal Kumar, Milton Saier, Yufeng Wang, Hong Cai, Jianying Gu, Michael W. Mather, Akhil B. Vaidya, David E. Wilkes, Vidyalakshmi Rajagopalan, David J. Asai, Chad G. Pearson, Robert C. Findly, Harry W. Dickerson, Martin Wu, Cindy Martens, Yves Van De Peer, David S. Roos, Donna M. Cassidy-Hanley, Theodore G. Clark
Comparative Genomics Of The Pathogenic Ciliate Ichthyophthirius Multifiliis, Its Free-Living Relatives And A Host Species Provide Insights Into Adoption Of A Parasitic Lifestyle And Prospects For Disease Control, Robert S. Coyne, Linda Hannick, Dhanasekaran Shanmugam, Jessica B. Hostetler, Daniel Brami, Vinita S. Joardar, Justin Johnson, Diana Radune, Irtisha Singh, Jonathan H. Badger, Ujjwal Kumar, Milton Saier, Yufeng Wang, Hong Cai, Jianying Gu, Michael W. Mather, Akhil B. Vaidya, David E. Wilkes, Vidyalakshmi Rajagopalan, David J. Asai, Chad G. Pearson, Robert C. Findly, Harry W. Dickerson, Martin Wu, Cindy Martens, Yves Van De Peer, David S. Roos, Donna M. Cassidy-Hanley, Theodore G. Clark
Publications and Research
Background
Ichthyophthirius multifiliis, commonly known as Ich, is a highly pathogenic ciliate responsible for 'white spot', a disease causing significant economic losses to the global aquaculture industry. Options for disease control are extremely limited, and Ich's obligate parasitic lifestyle makes experimental studies challenging. Unlike most well-studied protozoan parasites, Ich belongs to a phylum composed primarily of free-living members. Indeed, it is closely related to the model organism Tetrahymena thermophila. Genomic studies represent a promising strategy to reduce the impact of this disease and to understand the evolutionary transition to parasitism.
Results
We report the sequencing, assembly and annotation …
Group 11 Metal Compounds With Tripodal Bis(Imidazole) Thioether Ligands. Applications As Catalysts In The Oxidation Of Alkenes And As Antimicrobial Agents, Fangwei Liu, Reema Anis, Eunmi Hwang, Rafael Ovalle, Armando Varela-Ramírez, Renato J. Aguilera, María Contel
Group 11 Metal Compounds With Tripodal Bis(Imidazole) Thioether Ligands. Applications As Catalysts In The Oxidation Of Alkenes And As Antimicrobial Agents, Fangwei Liu, Reema Anis, Eunmi Hwang, Rafael Ovalle, Armando Varela-Ramírez, Renato J. Aguilera, María Contel
Publications and Research
New group 11 metal complexes have been prepared using the previously described tripodal bis(imidazole) thioether ligand (N-methyl-4,5-diphenyl-2- imidazolyl)2C(OMe)C(CH3)2S(tert-Bu) ({BITOMe,StBu}, 2). The pincer ligand offers a N2S donor atom set that can be used to coordinate the group 11 metals in different oxidation states [AuI , AuIII, AgI , CuI and CuII]. Thus the new compounds [Au{BITOMe,StBu}Cl][AuCl4]2 (3), [Au{BITOMe,StBu}Cl] (4), [Ag{BITOMe,StBu}X] (X = OSO2CF3 - 5, PF6 - 6) and [Cu{BITOMe,StBu}Cl2] (7) have been synthesized from reaction of 2 with the appropriate metal precursors, and characterized in solution. While attempting characterization in the solid state of 3, single crystals of the …
Differential Gene Expression In Male And Female Rainbow Trout Embryos Prior To The Onset Of Gross Morphological Differentiation Of The Gonads, Matthew C. Hale, Peng Xu, Julie Scardina, Paul A. Wheeler, Gary H. Thorgaard, Krista M. Nichols
Differential Gene Expression In Male And Female Rainbow Trout Embryos Prior To The Onset Of Gross Morphological Differentiation Of The Gonads, Matthew C. Hale, Peng Xu, Julie Scardina, Paul A. Wheeler, Gary H. Thorgaard, Krista M. Nichols
Department of Biological Sciences Faculty Publications
Background: There are large differences between the sexes at the genetic level; these differences include heterogametic sex chromosomes and/or differences in expression of genes between the sexes. In rainbow trout (Oncorhynchus mykiss) qRT-PCR studies have found significant differences in expression of several candidate sex determining genes. However, these genes represent a very small fraction of the genome and research in other species suggests there are large portions of the transcriptome that are differentially expressed between the sexes. These differences are especially noticeable once gonad differentiation and maturation has occurred, but less is known at earlier stages of development. Here we …
Characterizing The Distribution Of Planktonic Fecal Bacteria In The James River, Richmond, Virginia, John Furry
Characterizing The Distribution Of Planktonic Fecal Bacteria In The James River, Richmond, Virginia, John Furry
Theses and Dissertations
Surface waters containing fecal bacteria present significant public health risks. Understanding the sources of and factors affecting the distribution of fecal-indicating bacteria is necessary to predict potential illnesses more effectively. This thesis presents two studies on the distribution of fecal bacteria in the James River through Richmond, Virginia. Chapter 1 describes nearly 11 years of water quality, climate, and hydrologic data that occurred with changes in Escherichia coli concentrations, concluding that Richmond contributes significant quantities of fecal bacteria to the James River, and that the distribution of these bacteria varies seasonally. Chapter 2 details the development of Polymerase Chain Reaction …
Rumbling In The Benthos: Acoustic Ecology Of The California Mantis Shrimp Hemisquilla Californiensis, E. Staaterman, C. Clark, A. Gallagher, M. Devries, T. Claverie, S. Patek
Rumbling In The Benthos: Acoustic Ecology Of The California Mantis Shrimp Hemisquilla Californiensis, E. Staaterman, C. Clark, A. Gallagher, M. Devries, T. Claverie, S. Patek
Faculty Publications, Biological Sciences
Although much research has focused on acoustic mapping and exploration of the benthic environment, little is known about the acoustic ecology of benthic organisms, particularly benthic crustaceans. Through the use of a coupled audio–video system, a hydrophone array, and an autonomous recording unit, we tested several hypotheses about the field acoustics of a benthic marine crustacean, Hemisquilla californiensis. Living in muddy burrows in southern California, these large mantis shrimp produce low frequency ‘rumbles’ through muscle vibrations. First, we tested whether acoustic signals are similar in the field and in the laboratory, and discovered that field-produced rumbles are more acoustically and …
Understanding The Origin And Rapid Diversification Of The Genus Anthurium Schott (Araceae), Integrating Molecular Phylogenetics, Morphology And Fossils, Monica Maria Carlsen
Understanding The Origin And Rapid Diversification Of The Genus Anthurium Schott (Araceae), Integrating Molecular Phylogenetics, Morphology And Fossils, Monica Maria Carlsen
Dissertations
Anthurium is a strictly neotropical genus of Araceae ranging from southern Mexico to northern Argentina, including ca. 900 species and displaying an enormous variation in leaf morphology, growth habit, leaf venation pattern and inflorescence and fruit colors. Despite its immense diversity, its ecological importance in Neotropical forests, and a very long history of botanical collection, cultivation, and taxonomical research, Anthurium had been almost neglected in molecular phylogenies. This study combines chloroplast (trnG intron, trnH-psbA and trnC-ycf6 intergenic spacers) and nuclear (CHS first intron) DNA sequence data for 102 Anthurium species and uses maximum parsimony, likelihood and Bayesian phylogenetic analysis to …
Comprehensive Phylogenetic Reconstruction Of Amoebozoa Based On Concatenated Analyses Of Ssu-Rdna And Actin Genes, Daniel J.G. Lahr, Jessica Grant, Truc Nguyen, Jian Hua Lin, Laura A. Katz
Comprehensive Phylogenetic Reconstruction Of Amoebozoa Based On Concatenated Analyses Of Ssu-Rdna And Actin Genes, Daniel J.G. Lahr, Jessica Grant, Truc Nguyen, Jian Hua Lin, Laura A. Katz
Biological Sciences: Faculty Publications
Evolutionary relationships within Amoebozoa have been the subject of controversy for two reasons: 1) paucity of morphological characters in traditional surveys and 2) haphazard taxonomic sampling in modern molecular reconstructions. These along with other factors have prevented the erection of a definitive system that resolves confidently both higher and lower-level relationships. Additionally, the recent recognition that many protosteloid amoebae are in fact scattered throughout the Amoebozoa suggests that phylogenetic reconstructions have been excluding an extensive and integral group of organisms. Here we provide a comprehensive phylogenetic reconstruction based on 139 taxa using molecular information from both SSU-rDNA and actin genes. …
Interspecies Comparison Of Αii-Spectrin Abundance Between Chinook Salmon And Steelhead, Brielle D. Kemis, Ann L. Miracle, Katie A. Wagner, Christa M. Woodley
Interspecies Comparison Of Αii-Spectrin Abundance Between Chinook Salmon And Steelhead, Brielle D. Kemis, Ann L. Miracle, Katie A. Wagner, Christa M. Woodley
STAR Program Research Presentations
Salmonids, such as Chinook salmon (Oncorhynchus tshawytscha) and steelhead (O. mykiss), are a staple economic, recreational, tribal, and environmental resource, yet many populations are unsustainable. This study was part of a broad scale effort to monitor the impact of downstream migration obstacles on juvenile salmonid health and survival, which is an essential step towards increasing Smolt-to-Adult Return ratios (SARs). The objective of this study was to determine if juvenile Chinook salmon and steelhead exhibit differing quantities of alphaII-Spectrin Breakdown Products (SBDPs) over two consecutive spring migration periods, indicative of neurogenesis rate and/or biological response to head …