Biology Commons^™

Aging In The Mammalian Olfactory System, Stephen Clark

Masters Theses

The purpose of this investigation was to investigate genetic and age~related differences in the mammalian olfactory system. The molecule of interest is apolipoprotein E (apoE), a component oflipoprotein molecules which functions in the transport of cell membrane components (triglycerides, lipids, and cholesterol). Specifically in the nervous system, apoE is synthesized by glial cells that function in recycling dead nervous tissue components for delivery to growing or dividing neurons. ApoE is present in three protein isofon11s: apoE2, which has been associated with type III hyperlipoproteinemia; apoE3, rhe normal human isoforrn; and apoE4, which has been associated with Alzheimer's disease (AD). The …

Interaction Of Apoe With Estrogen In The Olfactory System During Nerve Maintenance And Recovery, Michael M. Tonsor Ii

Masters Theses

Estrogen replacement profoundly aids in nerve regeneration after injury in adult mammalian models. Estrogen replacement also protects against olfactory dysfunction in mammals. The mechanism underly1ng estrogen's neuroprotective effects remains ambiguous. My goal is to investigate and better clarify if apolipoprotein E (apoE ), a lipid transporting protein, is a critical intermediary to estrogen's effects on nerve maintenance and regeneration.

My hypothesis is that apoE is a mediator of estrogen's beneficial effects. This hypothesis is based on the following observations from previous studies. First, olfactory nerve regeneration was delayed in apoE-gene knockout (KO) mice as compared to wild type (WT) mice. …

Fragmentation Effects On Fitness In Five Common Prairie Species, Lydia Miramontes Loyd

Masters Theses

Midwest tallgrass prairies have suffered extensive habitat loss and as a result persist as isolated and highly fragmented remnants. In such small, isolated remnants, genetic drift and inbreeding depression can lead to a loss of genetic variation over time. Reduced genetic variation is often associated with reduced levels of growth, survival, and reproduction as well as increased susceptibility to stress. This study examined fitness traits of five common prairie species to determine whether plants in small fragmented remnants had reduced fitness as compared to those in a larger remnant. Five prairie species were chosen for this study based on their …

Nest Success, Nesting Habitat, & Nestling Feeding Rates Of Red-Headed Woodpeckers In East-Central Illinois, Nathan Cole Hudson

Masters Theses

The Red-headed Woodpecker (Melanerpes erythrocephalus) is a classic oak savanna species that has suffered significant population declines caused, in part, by extensive loss of savanna habitat and agricultural development. Despite consistent data that reveal a dramatic decline throughout much of their range, few studies have examined other possible explanations. In an effort to determine potential causes for their continued decline (as well as add to existing knowledge of nesting biology), we examined nest success and nesting micro-habitat features. We compared micro-habitat variables at: 1) golf and non-golf course sites, 2) successful and failed nest sites, and 3) nest and random …

Bibliography Of The Frogs Of The Leptodactylus Clade – Adenomera, Hydrolaetare, Leptodactylus, Lithodytes (Amphibia, Anura, Leptodactylidae) Volume 2. Indices, Miriam H. Heyer, W. Ronald Heyer, Rafael O. De Sá

Biology Faculty Publications

The bibliography (Volume 1) is organized alphabetically by last name of the first author. The Species Index, Keyword Index, and Geographic Index are organized by the unique number that EndNote® assigns to each record. To find a reference from the three indices, one must utilize the References by EndNote® Number, listed in numerical order. There is sufficient information associated with the EndNote® numerical order entry to find the specific reference involved in Volume 1 – References.

Complete authors names are used in the EndNote® Number index for the EndNote® records that contain such information. Note that there are some “missing” …

Analysis Of Transcription Factor Promoter Binding In Rat Hepatoma/Fibroblast Hybrids, Jordan C. Angle

Masters Theses

When hepatomas (liver cancer cells) are fused with fibroblasts (undifferentiated body cells), there is complete extinguishing of all tissue-specific gene expression. Once it was discovered that many hybrid cell lines do not express needed transcription factors for liver-specific gene transcription, the factors were reintroduced and forced to express through the use of plasmids. Even if the two primary transcription factors were present in the system, downstream tissue-specific gene expression was not rescued. To examine potential mechanisms for the repression of liver-specific gene expression in hepatoma x fibroblast hybrid cells, chromatin immunoprecipitation (ChlP) was used. This procedure allows the liver-specific gene …

Long-Term Assessment Of Predatory Fish Removal On A Pond-Breeding Amphibian Community In Central Illinois, Lee M. Gross

Masters Theses

Habitat loss and fragmentation are important contributors to population declines in many species, so maintaining suitable habitat has become a priority for wildlife management. Removal of introduced fish can help restore suitable habitats for amphibian populations, although long-term assessments of such removals are lacking at the community level. In 2001, drift fences and pitfall traps were constructed around the majority of four ponds to monitor an amphibian community in a nature preserve in central Illinois. Rotenone™ was applied to ponds containing introduced fish in 2001, and again, in 2003. I collected data from 2005-2007 to determine the long-term impacts of …

Habitat Selection And Niche Partitioning Of Fox And (Sciurus Niger) And Gray (Sciurus Carolinensis) Squirrels In Charleston, Il, Katelyn Marti

Masters Theses

Two species of tree squirrels inhabit Charleston, IL; fox squirrels (Sciurus niger) and gray squirrels (Sciurus caro/inensis). Although these species are sympatric throughout much of the eastern U.S., urban settings are usually occupied by one or the other. In the few localities where they co-occur, little is known about how they partition habitat. Therefore, the objectives of my study were to determine: (1) the relative abundance of each species, (2) whether habitat use differs between species, (3) if habitat use shifts with season, time of day, domestic predator abundance, or mast availability, and (3) observe interspecific and intraspecific interactions. The …

Survival Strategies Of The Endangered Physaria Ludoviciana (Silvery Bladderpod; Brassicaceae), Marissa Catherine Jernegan Grant

Masters Theses

Physaria ludoviciana (Nuttal) O'Kane and Al-Shehbaz is an endangered species in Illinois and Minnesota sand prairies, but has many individual populations in western states. Areas where P. ludoviciana occurs have high summer temperatures, a sandy soil with low water holding capacity and high drainage, the frequent disturbance of blowing sand and little canopy vegetation, giving it a full sun environment. This habitat is where few other plants are able to establish, providing P. ludoviciana with little competition. Physaria ludoviciana exists in a niche where it is adapted and able to establish and persist. The focus of this study was to …

(Mis)Interpreting Mathematical Models: Drift As A Physical Process, Roberta L. Millstein, Robert A. Skipper, Michael Dietrich

Dartmouth Scholarship

Recently, a number of philosophers of biology (e.g., Matthen and Ariew 2002; Walsh, Lewens, and Ariew 2002; Pigliucci and Kaplan 2006; Walsh 2007) have endorsed views about random drift that, we will argue, rest on an implicit assumption that the meaning of concepts such as drift can be understood through an examination of the mathematical models in which drift appears. They also seem to implicitly assume that ontological questions about the causality (or lack thereof) of terms appearing in the models can be gleaned from the models alone. We will question these general assumptions by showing how the same equation …

Micrornas And Metazoan Macroevolution: Insights Into Canalization, Complexity, And The Cambrian Explosion, Michael Dietrich, Mark Mcpeek, Kevin J. Peterson

Dartmouth Scholarship

One of the most interesting challenges facing paleobiologists is explaining the Cambrian explosion, the dramatic appearance of most metazoan animal phyla in the Early Cambrian, and the subsequent stability of these body plans over the ensuing 530 million years. We propose that because phenotypic variation decreases through geologic time, because microRNAs (miRNAs) increase genic precision, by turning an imprecise number of mRNA transcripts into a more precise number of protein molecules, and because miRNAs are continuously being added to metazoan genomes through geologic time, miRNAs might be instrumental in the canalization of development. Further, miRNAs ultimately allow for natural selection …

Understanding Plant Community Composition In Agricultural Welands: Context Dependent Effects And Plant Interactions, Elizabeth Boughton

Electronic Theses and Dissertations

Community composition results from an integrated combination of random processes, regional habitat spatial structure, local environmental conditions, and species interactions. For example, the outcome of plant interactions can change depending on local environmental conditions such as nutrient availability, land management, or herbivory intensity. In particular, plant interactions may vary between facilitation and competition depending on ecological context, with facilitation expected to be prevalent under stressful conditions. I present the results of four studies that address different aspects of the community assemblage and dynamics emphasizing the synergistic effect of different processes. In the first, I investigated the importance of habitat isolation …

Landcover Change And Population Dynamics Of Florida Scrub-Jays And Florida Grasshopper Sparrows, David Breininger

Electronic Theses and Dissertations

I confronted empirical habitat data (1994-2004) and population data (1988-2005) with ecological theory on habitat dynamics, recruitment, survival, and dispersal to develop predictive relationships between landcover variation and population dynamics. I focus on Florida Scrub-Jays, although one chapter presents a model for the potential influence of habitat restoration on viability of the Florida Grasshopper Sparrow. Both species are unique to Florida landscapes that are dominated by shrubs and grasses and maintained by frequent fires. Both species are declining, even in protected areas, despite their protected status. I mapped habitat for both species using grid polygon cells to quantify population potential …

Tissue Engineered Myelination And The Stretch Reflex Arc Sensory Circuit: Defined Medium Formulation, Interface Design And Microfabrication, John Rumsey

Electronic Theses and Dissertations

The overall focus of this research project was to develop an in vitro tissue-engineered system that accurately reproduced the physiology of the sensory elements of the stretch reflex arc as well as engineer the myelination of neurons in the systems. In order to achieve this goal we hypothesized that myelinating culture systems, intrafusal muscle fibers and the sensory circuit of the stretch reflex arc could be bioengineered using serum-free medium formulations, growth substrate interface design and microfabrication technology. The monosynaptic stretch reflex arc is formed by a direct synapse between motoneurons and sensory neurons and is one of the fundamental …

Evidence For Multiple Paternity In Broods Of The Green Lynx Spider Peucetia Viridans (Araneae: Oxyopidae), Martina G. Ramirez

Biology Faculty Works

In the green lynx spider Peucetia viridans (Hentz 1832), the two openings of a mated female’s epigynum are often sealed by copulatory plugs, sometimes with the two-pronged distal portion of the paracybium of a male palpus inserted in each opening and embedded in the plugs. The presence of copulatory plugs and paracymbia may prevent further mating by the female. However, not all mated females exhibit these structures, perhaps allowing some P. viridans females to mate with more than one male, despite the assertion of Whitcomb & Eason (1965) that females only mate once. We investigated this possibility by surveying the …

The Evolution Of Photoperiodic Response Systems And Seasonal Gnrh Plasticity In Birds, Heather E. Watts

Biology Faculty Works

Animals’ lives are typically subdivided into distinct stages, some of which (e.g. breeding) contribute to fitness through enhancing current reproductive success, and some of which (e.g. molting and migration in birds; hibernation in mammals) contribute to fitness through enhancing survival and, therefore, future reproductive opportunities. There is often a trade-off between these two kinds of processes, either because they are temporally incompatible with one another (e.g. migration precludes simultaneous nesting in birds) or because they are energetically incompatible with one another (e.g. successful molting appears to be incompatible with simultaneous nesting in many birds). Consequently, adaptations facilitating appropriate timing and …

Effects Of Pediatric Adiposity On Heart Rate Variability, Angela K. Lucas

Dissertations, Master's Theses and Master's Reports - Open

The relationship between obesity and heart rate variability (HRV) has been studied in adults and adolescents, but is not determined in young pediatrics. The purpose of this study was to assess autonomic activity using HRV in a pediatric population. We hypothesized that obese children would have reduced parasympathetic and increased sympathetic activity compared to age-matched subjects. 42 pediatric subjects (ages 3-5) were classified into 3 groups based on body mass index-for-age; normal, overweight and obese. HRV and respiratory rate were recorded during 3 minute baseline, 2 minute isometric handgrip and 3 minute recovery. HRV was analyzed in the time domain …

Yeast Telomere Capping Protein Stn1 Overrides Dna Replication Control Through The S Phase Checkpoint, Hovik J. Gasparyan

Biology Faculty Works

Telomere integrity is maintained through end-protection proteins that block nuclease degradation and prevent telomeres from being recognized as DNA breaks. Although less well understood, end protection proteins may also play a role in facilitating telomere replication. Here, we show that overproduction (OP) of the yeast telomere capping protein Stn1 makes cells highly sensitive to the replication inhibitors hydroxyurea (HU) and methyl-methane sulfonate (MMS). Unexpectedly, this sensitivity corresponds with Stn1 OP blocking most, if not all, aspects of the S phase checkpoint. The checkpoint kinase Rad53 is phosphorylated with normal timing in Stn1 OP cells, indicating Stn1 does not interfere with …

Ten1 Is Essential For Cdc13-Mediated Telomere Capping, Hovik J. Gasparyan

Biology Faculty Works

Telomere binding proteins protect chromosome ends from degradation and mask chromosome termini from checkpoint surveillance. In Saccharomyces cerevisiae, Cdc13 binds single-stranded G-rich telomere repeats, maintaining telomere integrity and length. Two additional proteins, Ten1 and Stn1, interact with Cdc13 but their contributions to telomere integrity are not well defined. Ten1 is known to prevent accumulation of aberrant single-stranded telomere DNA; whether this results from defective end protection or defective telomere replication is unclear. Here we report our analysis of a new group of ten1 temperature-sensitive (ts) mutants. At permissive temperatures, ten1-ts strains display greatly elongated telomeres. After shift to nonpermissive conditions, …

Coywolf, Canis Latrans × Lycaon, Pack Density Doubles Following The Death Of A Resident Territorial Male, Eric Strauss

Biology Faculty Works

We studied a subset of four radio-collared individuals that were a part of a larger study documenting Coywolf (Canis latrans × lycaon; Eastern Coyote) ecology in an urbanized landscape (Cape Cod, Massachusetts), and report on the territory of a typical sized pack that was subdivided roughly in half following the death of the breeding male from the original (" Centerville") pack. The original residents lived in a winter pack size (i.e., after pup/juvenile dispersal) of three or four individuals in a 19.66 km territory and a density of 0.15-0.20 individuals/km , as determined by radio-tracking and direct observations, with their …

An Algorithm For Identifying Novel Targets Of Transcription Factor Families: Application To Hypoxia-Inducible Factor 1 Targets, Yue Jiang, Bojan Cukic, Donald A. Adjeroh, Heath D. Skinner, Jie Lin, Qingxi J. Shen, Bing-Hua Jiang

Electrical & Computer Engineering Faculty Research

Efficient and effective analysis of the growing genomic databases requires the development of adequate computational tools. We introduce a fast method based on the suffix tree data structure for predicting novel targets of hypoxia-inducible factor 1 (HIF-1) from huge genome databases. The suffix tree data structure has two powerful applications here: one is to extract unknown patterns from multiple strings/sequences in linear time; the other is to search multiple strings/sequences using multiple patterns in linear time. Using 15 known HIF-1 target gene sequences as a training set, we extracted 105 common patterns that all occur in the 15 training genes …

The Influence Of Fallback Foods On Great Ape Tooth Enamel, Paul J. Constantino, Peter W. Lucas, James J.-W. Lee, Brian R. Lawn

Biological Sciences Faculty Research

Lucas and colleagues recently proposed a model based on fracture and deformation concepts to describe how mammalian tooth enamel may be adapted to the mechanical demands of diet (Lucas et al.: Bioessays 30[2008] 374-385). Here we review the applicability of that model by examining existing data on the food mechanical properties and enamel morphology of great apes (Pan, Pongo, and Gorilla). Particular attention is paid to whether the consumption of fallback foods is likely to play a key role in influencing great ape enamel morphology. Our results suggest that this is indeed the case. We also consider the implications of …

A Revision Of The Freshwater Crabs Of Mt. Kenya And The Aberdare Mountains , Neil Cumberlidge

Journal Articles

No abstract provided.

"A New Species Of Foza Reed & Cumberlidge, 2006, From Northern Madagascar" , Neil Cumberlidge, Kirstin S. Meyer

Journal Articles

No abstract provided.

Freshwater Crabs And The Biodiversity Crisis: Importance, Threats, Status, And Conservation Challenges, Neil Cumberlidge, Peter Kl Ng, Darren Cj Yeo, Celio Magalhães, Martha R. Campos, Fernando Alvarez, Tohru Naruse, Savel R. Daniels, Lara J. Esser, Felix Yk Attipoe, France-Lyse Clotilde-Ba, William Darwall, Anna Mcivor, Jonathan Em Baillie, Ben Collen, Mala Ram

Journal Articles

No abstract provided.

"A Revision Of The Freshwater Crabs Of Mt Kenya And The Aberdare Mountains, Kenya, East Africa" , Neil Cumberlidge

Journal Articles

No abstract provided.

Evolutionary Time For Dispersal Limits The Extent But Not The Occupancy Of Species’ Potential Ranges In The Tropical Plant Genus Psychotria (Rubiaceae), John R. Paul, Cynthia Morton, Charlotte M. Taylor, Stephen J. Tonsor

Biology Faculty Publications

Explaining the diversity in geographic range sizes among species is a central goal of ecological and evolutionary studies. We tested species age as an explanation of range size variation within a group of understory shrubs in the Neotropics (Psychotria subgenus Psychotria, Rubiaceae). We distinguish between range occupancy (filling an occupied area) and range extent (maximum distances dispersed). We used Bayesian relaxed-clock dating of molecular sequence data to estimate the relative age of species, and we used species distribution modeling to predict species' potential ranges. If the range sizes of species are limited by time for dispersal, we hypothesize that older …

Virus-Encoded Homologs Of Cellular Interleukin-10 And Their Control Of Host Immune Function, Barry Slobedman, Peter A. Barry, Juliet V. Spencer, Selmir Avdic, Allison Abendroth

Biology Faculty Publications

No abstract provided.

Development And Validation Of A High Throughput, Elisa Morales

Open Access Theses & Dissertations

Not Required

The Effect Of Exogenous Leptin On Murine Dendritic Cell Morphology And Function, Christine Delgado

Open Access Theses & Dissertations

Leptin is a pleiotropic hormone primarily secreted by white adipose tissue. Although originally found to regulate food intake and energy expenditure, it is now known to also significantly affect the immune system. In this study we assessed the effect of leptin on bone marrow derived dendritic cell (BM-DC) cytoskeletal structure and functionality. Our preliminary data demonstrates that the addition of physiological concentrations of exogenous leptin to BM-DC causes cytoskeletal rearrangement specifically that of actin as evidenced by increased number of llamelopodia/dendrites and increased staining for actin within the llamelopodia/dendrite region. This suggests that leptin is a necessary component of DC …