Biology Commons^™

Long-Term Functional Trait Dynamics In Abandoned Agricultural Fields, Timothy A. Rye

Masters Theses

A fundamental question of plant succession is whether species within different successional stages differ in terms of functional traits as changes in community-level traits reflect changes in plant strategies over time. Although there are many studies that focus on that question, researchers have not studied the long-term dynamics of those traits within plant communities in depth. We used data from a 49-year study of old-field succession (the Buell-Small Succession Study) to assess the dynamics of important functional traits (height, seed mass, specific leaf area) and compared their dynamics among life forms and between native and non-native species. We assessed communitylevel …

Foraging Site Selection In Prairie Kingsnakes (Lampropeltis C. Calligaster): An Experimental Approach, Angela M. Fornell

Masters Theses

A critical component to a predator’s survival is the choice of foraging sites that yield enough predatory success to meet energetic demands. To elucidate cues used to select foraging sites, I examined foraging site selection in Prairie Kingsnakes (Lampropeltis c. calligaster), a generalist species whose foraging mode is flexible. My objectives were to determine: the pattern of foraging site selection; the importance of certain cues that kingsnakes use when selecting foraging sites; and, whether or not kingsnakes adjust their foraging patterns in response to alterations in the microhabitat. I tested subjects in a large experimental arena under several treatment conditions …

Terrestrial Macrofungi Of Old-Growth Prairie Groves, Vincent P. Hustad

Masters Theses

The purpose of this study was to evaluate and contrast the communities of terrestrial macrofungi of Brownfield and Trelease Woods, Champaign Co., IL; old-growth prairie groves isolated for> 120 years. This study represents the first known analysis of fungal communities in old-growth prairie grove ecosystems in the Midwestern United States, and provides an excellent opportunity to characterize the fungal biodiversity of established old-growth reference communities for comparisons with other sites, both local and distant. Fungal communities were sampled during the fall fruiting seasons of 2006 and 2007 using a plot frequency study of fungal abundance. Several estimators of species richness …

Correlating Phytoplankton Assemblages With Water Quality In Illinois Lakes And Reservoirs: Validating Models Based On Historical Data, Jason D. Allen

Masters Theses

In the last two decades management and monitoring efforts in freshwater systems has shifted from point source pollutants to non-point source pollutants and environmental modification. Long term, large scale sampling projects necessitated by such a shift often are infeasible due to logistical, cost, and time constraints.

In recent years fish and benthic macroinvertebrate indices of biological integrity (IBI's) have been used to survey the quality of flowing (lotic) water systems, which have drastically reduced sampling time and facilitated large scale monitoring projects. However, it is unlikely that these could be adapted to lentic systems. This study was undertaken in an …

The Impact Of Climate On The Leaf Characteristics Of Genus Fraxinus, Brian W. Craven

Masters Theses

Fraxinus (ash) has six species across eastern North America, five of which are found in Illinois (F. americana, F. pennsylvanica, F. nigra, F. quadrangulata, F. profimda). It is also threatened by the emerald ash borer (Agrilus planipennis) (BAB). Are climate differences across a north-south distance of 600 km great enough to create differences in the morphological characteristics of Fraxinus species? Studying latitudinal variation in the species of Fraxinus would reveal the impact of climate on the leaf characteristics of a genus of trees which extend over a considerable portion of the continent. The objectives of this study were to determine …

Leptodactylus Cunicularius Sazima And Bokermann Rabbit-Burrow Frog, W. R. Heyer, M. M. Heyer, Rafael O. De Sá

Biology Faculty Publications

Adult Leptodactylus cunicularius are moderately small. The head is longer than wide and the hind limbs are long (Table 1; Heyer and Thompson 2000 provided definitions of adult size and leg length categories for Leptodactylus). Male vocal sacs are internal, not externally expanded. The snout is protruding, not sexually dimorphic. Male forearms are not hypertrophied and males lack asperities on the thumbs and chest. The dorsum is variegated with small, often confluent, spots and blotches. There is a very thin interrupted mid-dorsal light stripe (pinstripe). Usually, there is a noticeable light, irregular, elongate, mid-dorsal blotch in the scapular region. …

Is The Amphibian Tree Of Life Really Fatally Flawed?, Darrel R. Frost, Taran Grant, Julian Faivovich, Raoul H. Bain, Alexander Haas, Celio F.B. Haddad, Rafael O. De Sá, Et Al.

Biology Faculty Publications

Wiens (2007, Q. Rev. Biol. 82, 55–56) recently published a severe critique of Frost et al.'s (2006, Bull. Am. Mus. Nat. Hist. 297, 1–370) monographic study of amphibian systematics, concluding that it is “a disaster” and recommending that readers “simply ignore this study”. Beyond the hyperbole, Wiens raised four general objections that he regarded as “fatal flaws”: (1) the sampling design was insufficient for the generic changes made and taxonomic changes were made without including all type species; (2) the nuclear gene most commonly used in amphibian phylogenetics, RAG-1, was not included, nor were the morphological characters that had justified …

Evaluation Of The Oxalate-Consuming Activities Of Probiotic Microorganisms, Alexandra E.C. Baluka

Masters Theses

This study identifies the oxalate-consuming capabilities of mixtures of probiotic microorganisms, present as commercial probiotics, as well as in seventeen pure cultures of probiotic microorganisms. Probiotics are sold commercially as powders, tablets, and supplements of live microorganisms that, when taken in large amounts, confer a health benefit to the host. Increased levels of urinary oxalate coincide with the formation of kidney stones, so this study sought to identify organisms capable of oxalate consumption that could potentially be manufactured for those suffering from calcium oxalate kidney stones. This study determined that consumption of oxalate was not directly tied to active growth …

Mating Bias In The Red Imported Fire Ant, Solenopsis Invicta, Kendra Carroll

Masters Theses

The two social forms in the red imported fire ant, Solenopsis invicta, are believed to be governed by the expression of one specific gene. This gene, known as Gp-9, is responsible for the production of general protein-9, thought to be a pheromone binding protein. Among the social aspects thought to be controlled by this locus is reproduction. Many aspects of breeding within and between the two colonial forms have been investigated over the past years since in introduction of this species to the United States. In this study, several features of the currently accepted model were examined. Newlymated queens were …

Evaluating The Illinois Stream Valley Segment Model As An Effective Management Tool, Stephen S. Warrner

Masters Theses

Stream habitat assessment procedures have been used to monitor logical potential, habitat restoration, and determine anthropogenic impacts on streams. In the past, the Illinois Department of Natural Resources (IDNR) and the Illinois Natural History Survey (INHS) have determined which stream reaches to sample habitat quality based on historical data, accessibility, and whether or not a reach is representative of an area. To develop a consistent and unbiased procedure for choosing sampling locations, the IDNR and INHS have proposed a technique by which watersheds are divided into homogeneous stream segments called valley segments. Valley segments within each watershed are determined by …

Spatial And Ecological Patterns Of Tent Location In The Eastern Tent Caterpillar, Malacosoma Americana (Lepidoptera:Lasiocampidae), Jennifer Pleasant

Masters Theses

The eastern tent caterpillar, Malacosoma americanum (Fabricius) (Lepidoptera: Lasiocampidae) is a widely studied social caterpillar. The nests (i.e. tents) of the tent caterpillar are most frequently found on Black Cherry trees (Prunus serotina). However, dispersions of tents are often clumped with one cherry tree having five or more tent caterpillar nests in it and another cherry tree 3 meters away having only one nest, or none at all. I tried to determine why this happens. Because of the short field season, much of the research on the caterpillars has been done in the laboratory. I tried to determine host selection …

A Survey Of Carrion And Burying Beetles (Coleoptera:Silphidae) In Mchenry County, Illinois, David Suhrbur

Masters Theses

This study compared the occurrence of beetles in the family Silphidae using historical collection records with that of field collections from five different sites within McHenry County. The five sites include: Glacial Park, Woodstock, Silver Creek, Rush Creek, and Coral Woods. Historically, 11 known silphid species have been found in McHenry County, compared with seven species found during this study' collection period.

Percentages of silphid species at each site was calculated, as well as total number of individuals sampled, and two indices of diversity (Shannon-Weiner and Simpson's) were applied to both current and historical collection data. The historical collection (when …

Movement Patterns And Feeding Behavior Of The Limpet Tectura Testudinalis (Müller) Along The Mid-Maine Coast, Joshua Lord

Honors Theses

Tectura testudinalis is a limpet that lives in the mid-intertidal zone along the coast of Maine and grazes on a variety of encrusting algae. A previous study asserted that T. testudinalis preferred to feed and rest on the encrusting alga Clathromorphum circumscriptum and that this species of limpet displayed homing behavior. However, I show that T. testudinalis does not home or return to any specific substrate while resting. Conclusive evidence was found for nocturnal movement. I show that C. circumscriptum was the preferred food source for this limpet, closely followed by Hildenbrandia rubra, another encrusting alga. Field and lab experiments …

Recovery And Restoration Of The Seagrass Halodule Wrightii After Boat Propeller Scar Damage In A Pole-Troll Zone In Mosquito Lag, Katherine Grablow

Electronic Theses and Dissertations

This study combined documentation of four boat propeller scar types in Halodule wrightii seagrass beds in Mosquito Lagoon, Florida with manipulative field experiments to document scar recovery times with and without restoration. Scar types ranged from the most severe scar type (Type 1) with trench formation which had no roots or shoots in the trench, to the least severe (Type 4) scars that had no depth, intact roots and shoots shorter than the surrounding canopy. For 110 measured existing scars, the frequency of each scar type was 56% for Type 1, 10% for Type 2, 7% for Type 3, and …

Prevalence And Severity Of Fibropapillomatosis In Juvenile Green Turtles (Chelonia Mydas) In Three Habitats On Florida's Eas, Kelly Borrowman

Electronic Theses and Dissertations

Fibropapillomatosis (FP) is a tumor-forming disease mainly found in juvenile green turtles (Chelonia mydas) inhabiting Florida's east coast. Despite increased research on the herpes virus that putatively causes it, long-term assessment is still needed of the distribution and severity of FP. Using the decades-long database compiled by the University of Central Florida Marine Turtle Research Group, I determined FP severity and distribution at three different sites: Indian River Lagoon (IRL), Sabellariid Worm Reef (SWR) and Trident Submarine Basin (TSB). Fibropapillomatosis occurred in > 50% of IRL turtles, 18% of SWR turtles and <1% of TSB turtles. Regression of FP tumors was correlated with its prevalence, i.e. when and where FP was common, tumor regression was common. The probability of a turtle being non-afflicted or mildly afflicted increased with both increasing straight-line carapace length (SCL) and increasing relative body condition (residuals of log body mass versus log SCL). Mean annual growth rates of IRL and SWR turtles did not vary with FP severity; however, mean annual growth rates in IRL (1.10 cm/y) were significantly higher than in SWR (1.05 cm/y) and TSB (1.04 cm/y). Annual apparent survival estimates for IRL and TSB turtles were 0.72 and 0.73, respectively, and were constant over time. Even with increased prevalence of FP, annual apparent survival estimates were constant and similar to survival estimates of juvenile green turtles in areas without FP. In IRL, survival rates among FP Categories 0, 1 and 2 were similar (0.74, 0.74 and 0.81 respectively) and lower only for FP Category 3 (0.63). Thus, while FP occurred in > 50% of turtles in some Florida east coast populations, …

Control Of Stomatal Formation In Arabidopsis Thaliana Inflorescence Stem, Nalini Odapalli

Electronic Theses and Dissertations

Stomata are cellular structures that control water loss and gas exchange through the plant epidermis. Stomata arise from special stem cells called meristemoids through a series of programmed asymmetric divisions that are controlled by cell signaling, or via multitude of regulatory pathways and intercellular communication between epidermal cells. In Arabidopsis thaliana, stomata are spaced non-randomly in the epidermis by cell-cell signaling of the receptor-like protein TOO MANY MOUTHS (TMM) as well as other proteins. Point mutation of the TMM gene prevents the development of stomata in some tissues like inflorescence stems. Investigation of tmm mutant stems showed that self-renewing stem …

Social Grouping Behaviors Of Captive Female Hippopotamus Amphibius, Tracy Blowers

Electronic Theses and Dissertations

Levels of sociality vary depending on the costs and benefits associated with grouping behavior. Grouping species form either ephemeral aggregations due to resource availability, or structured groups based on familiarity of individuals. Because there are different costs and benefits associated with different types of groups, it is important to understand more about group structure before making predictions about specific behaviors. Female Hippopotamus amphibius are known to aggregate in the wild but the true nature of their grouping behavior is still not understood. My objective was to determine if captive female hippos form either ephemeral aggregations or social groups. Behavioral data, …

Assessing And Modeling Mangrove Forest Dynamics Along The Temperate-Subtropical Ecotone In Eastern Florida, Susan Leitholf

Electronic Theses and Dissertations

Mangrove ecosystems are among the world's most endangered biomes; nearly one-half of the overall coverage is threatened by human activity, invasive species, and global climate change. Mangroves play an important ecosystem role through detrital production and by providing: fisheries and wildlife nursery habitat, shoreline protection, a sink for nutrients, carbon, and sediment. In addition to human activity, the Florida mangroves (Avicennia germinans, Laguncularia racemosa, and Rhizophora mangle) are being threatened by the invasive Brazilian pepper (Schinus terebinthifolius). This study was performed along a 261 km stretch of the east coast of Florida from Sebastian Inlet to the northern extent of …

Zoological Label As Literary Form, Victor Fet

Biological Sciences Faculty Research

Nabokov’s work is seen through the unique concept of zoological labels and their language. A label, written by a young naturalist, is a concentrated source of information, detail, and “naming the unnamed”; it reflects three Aristotelian unities (place, time, action).

"A Global Assessment Of Freshwater Crab Diversity" , Darren Cj Yeo, Peter Kl Ng, Neil Cumberlidge, Celio Magalhães, Savel R. Daniels, Martha R. Campos

Journal Articles

No abstract provided.

"A Revision Of The Higher Taxonomy Of The Afrotropical Freshwater Crabs With A Discussion Of Their Biogeography" , Neil Cumberlidge, Richard M. Von Sternberg, Savel R. Daniels

Journal Articles

No abstract provided.

Mitochondria In Energy-Limited States : Mechanisms That Blunt The Signaling Of Cell Death., Steven Hand, Michael Menze

Faculty and Staff Scholarship

Cellular conditions experienced during energy-limited states – elevated calcium, shifts in cellular adenylate status, compromised mitochondrial membrane potential – are precisely those that trigger, at least in mammals, the mitochondrion to initiate opening of the permeability transition pore, to assemble additional protein release channels, and to release pro-apoptotic factors. These proapototic factors in turn activate initiator and executer caspases. How is activation of mitochondria-based pathways for the signaling of apoptotic and necrotic cell death avoided under conditions of hypoxia, anoxia, diapause, estivation and anhydrobiosis? Functional trade-offs in environmental tolerance may have occurred in parallel with the evolution of diversified pathways …

Immunomodulatory Properties Of A Viral Homolog Of Human Interleukin-10 Expressed By Human Cytomegalovirus During The Latent Phase Of Infection, C Jenkins, W Garcia, M J. Godwin, Juliet V. Spencer, J Lewis Stern, Allison Abendroth, Barry Slobedman

Biology Faculty Publications

Human cytomegalovirus (HCMV) establishes a latent infection in hematopoietic cells, from which it can reactivate to cause significant disease in immunocompromised individuals. HCMV expresses a functional homolog of the immunosuppressive cytokine interleukin-10 (termed cmvIL-10), and alternate splicing of the cmvIL-10 transcript results in expression of a latency-associated cmvIL-10 transcript (LAcmvIL-10). To determine whether LAcmvIL-10 encodes immunosuppressive functions, recombinant LAcmvIL-10 protein was generated, and its impact on major histocompatibility complex class II (MHC-II) expression was examined on granulocyte macrophage progenitor cells (GM-Ps) and monocytes. LAcmvIL-10 (and cmvIL-10) downregulated MHC-II on the surfaces of both cell types. This downregulation was associated with …

Functional Gene Losses Occur With Minimal Size Reduction In The Plastid Genome Of The Parasitic Liverwort Aneura Mirabilis, N. J. Wickett, Y. Zhang, S. K. Hansen, J. M. Roper, J. V. Kuehl, S. A. Plock, B. Goffinet, Paul G. Wolf, C. W. Depamphilis, Jeffrey L. Boore

Biology Faculty Publications

Aneura mirabilis is a parasitic liverwort that exploits an existing mycorrhizal association between a basidiomycete and a host tree. This unusual liverwort is the only known parasitic seedless land plant with a completely nonphotosynthetic life history. The complete plastid genome of A. mirabilis was sequenced to examine the effect of its nonphotosynthetic life history on plastid genome content. Using a partial genomic fosmid library approach, the genome was sequenced and shown to be 108,007 bp with a structure typical of green plant plastids. Comparisons were made with the plastid genome of Marchantia polymorpha, the only other liverwort plastid sequence available. …

Conservation Of Selection On Matk In Ferns Following An Ancient Loss Its Flanking Intron, A. M. Duffy, S. A. Kelchner, Paul G. Wolf

Biology Faculty Publications

The chloroplast gene trnK and its associated group II intron appear to be absent in a large and ancient clade that includes nearly 90% of fern species. However, the maturase protein encoded within the intron (matK) is still present and located on the boundary of a large-scale inversion. We surveyed the chloroplast genome sequence of clade-member Adiantum capillus-veneris for evidence of a still present but fragmented trnK intron. Lack of signature structural domains and sequence motifs in the genome indicate loss of the trnK intron through degradation in an ancestor of the clade. In plants, matK preferentially catalyzes splicing of …

Wind, Waves, And Wing Loading: Their Relative Importance To The At-Sea Distribution And Movements Of North And Central Pacific Albatrosses, R M. Suryan, D J. Anderson, Scott A. Shaffer, D D. Roby, Y Tremblay, D P. Costa, F Sato, K Ozaki, G Balogh

Faculty Publications, Biological Sciences

Among the varied adaptations for avian flight, the morphological traits allowing large-bodied albatrosses to capitalize on wind and wave energy for efficient long-distance flight are unparalleled. Consequently, the biogeographic distribution of most albatrosses is limited to the windiest oceanic regions on earth; however, exceptions exist. Species breeding in the North and Central Pacific Ocean (Phoebastria spp.) inhabit regions of lower wind speed and wave height than southern hemisphere genera, and have large intrageneric variation in body size and aerodynamic performance. Here, we test the hypothesis that regional wind and wave regimes explain observed differences in Phoebastria albatross morphology and we …

Perspectives In Ornithology: Application Of Tracking And Data-Logging Technology In Research And Conservation Of Seabirds, A E. Burger, Scott A. Shaffer

Faculty Publications, Biological Sciences

No abstract provided.

Diet Of Western Slimy Salamander, Plethodon Albagula (Caudata: Plethodontidae), From Two Mountain Ranges In Arkansas, Joseph Milanovich, Stanley E. Trauth, Tanja Mckay

Biology: Faculty Publications and Other Works

We identified stomach contents of 80 Plethodon albagula (Western Slimy Salamander) from two mountain ranges in Arkansas (Ozark and Ouachita) to examine if regional differences in diet occur. Museum specimens from 1985 to 2005 were used from locations throughout each mountain range. Although a wide variety of prey were found in stomachs, Hymenoptera: Formicidae and Coleoptera: Carabidae were found to be the most important food items in the diet of P. albagula. Ants and beetles constituted 85% abundance of their total diet (79.6% Ozark and 90.1% Ouachita) and 52.2% of their total biomass (42.6% Ozark and 64.1% Ouachita). Seventy-eight and …

Selective Gene Expression By Postnatal Electroporation During Olfactory Interneuron Nurogenesis, Alexander T. Chesler, Claire E. Le Pichon, Jessica H. Brann, Ricardo C. Araneda

Biology: Faculty Publications and Other Works

Neurogenesis persists in the olfactory system throughout life. The mechanisms of how new neurons are generated, how they integrate into circuits, and their role in coding remain mysteries. Here we report a technique that will greatly facilitate research into these questions. We found that electroporation can be used to robustly and selectively label progenitors in the Subventicular Zone. The approach was performed postnatally, without surgery, and with near 100% success rates. Labeling was found in all classes of interneurons in the olfactory bulb, persisted to adulthood and had no adverse effects. The broad utility of electroporation was demonstrated by encoding …

Estimation Of Submarine Groundwater Discharge From Bulk Ground Electrical Conductivity Measurements, Thomas Stieglitz, John Rapaglia, Henry Bokuniewicz

Biology Faculty Publications

The utility of bulk ground conductivity (BGC) measurements in the estimation of submarine groundwater discharge (SGD) was investigated at four sites covering a range of hydrogeological settings, namely Cockburn Sound (Australia); Shelter Island (USA); Ubatuba Bay (Brazil) and Flic-en-Flac Bay (Mauritius). At each of the sites, BGC was surveyed in the intertidal zone, and seepage meters were used for direct measurements of SGD flow rates. In the presence of detectable salinity gradients in the sediment, a negative correlation between SGD and BGC was recorded. The correlation is site-specific and is dependent on both the type of sediment and the mixing …