Biology Commons^™

An Isotopic Examination Of Cave, Spring And Epigean Trophic Structures In Mammoth Cave National Park, Zacchaeus Greg Compson

Masters Theses & Specialist Projects

AN ISOTOPIC EXAMINATION OF CAVE, SPRING AND EPIGEAN TROPHIC STRUCTURES IN MAMMOTH CAVE NATIONAL PARK

Name: Zacchaeus Greg Compson Date: October 15, 2004 Pages: 56

Directed by: Philip Lienesch, Doug McElroy, Michael Stokes and Richard Bowker

Department of Biology Western Kentucky University

Abstract

High-water events in the Green River result in flow-reversals which flush native and introduced fishes into Mammoth Cave, posing threats to indigenous cave fauna. However, little is known about the trophic interactions between cave and epigean aquatic systems or their connectivity via natural springs. The purpose of this study was to use stable isotopes of C and …

A Method Based On Conserved Multiple Amino Acid Properties To Predict Amino Acid Substitutions Which Maintain The Protein Structure, Avinash M. Baktula

Masters Theses & Specialist Projects

A METHOD BASED ON CONSERVED MULTIPLE AMINO ACID PROPERTIES TO PREDICT AMINO ACID SUBSTITUTIONS WHICH MAINTAIN THE PROTEIN STRUCTURE Avinash M. Baktula September 16, 2004 1-117 Directed by: Claire A. Rinehart, Doug McElroy and Sigrid Jacobshagen Department of Biology Western Kentucky University Proteins often contain several domains, each with a distinct structure. Such domains have evolved as units that, when combined in various arrangements, produce proteins of unique structure. This study was conducted to identify amino acid substitutions that don’t change structure. Amino acid properties which were conserved in proteins with identical structures were used to predict a set of …

Splicing Affects Presentation Of Rna Dimerization Signals In Hiv-2 In Vitro, Jean-Marc Lanchy, Quenna N. Szafran, J. Stephen Lodmell

Biological Sciences Faculty Publications

During retroviral replication, full-length viral RNAs are encapsidated into new virus particles, while spliced RNAs are excluded. The Retroviridae are unique among viruses in that infectious viral particles contain a dimer of two identical genomic RNA strands. A variety of experimental data has suggested that dimerization and encapsidation of full-length viral RNAs are linked processes, although whether dimerization is a prerequisite for encapsidation, or conversely, dimerization follows encapsidation, has not been firmly established. If dimerization was the sole determinant for encapsidation, then spliced viral RNAs might be expected to display a reduced capacity for dimerization, resulting in their exclusion from …

Seed Mass And Morphology In Outcrossing And Selfing Species Of Clarkia (Onagraceae): An Sem Study, Jennifer L. Knies, Veronique A. Delesalle, A. R. Cavaliere

Biology Faculty Publications

Seeds from three pairs of outcrossing-selfing sister taxa from the genus Clarkia (farewell-to-spring, Onagraceae)—Clarkia unguiculata, Clarkia exilis, Clarkia xantiana ssp. xantiana and ssp. parviflora, and Clarkia concinna ssp. concinna and ssp. automixa—were studied to assess the effects of contrasting mating systems on seed mass and seed morphology. For each outcrossing-selfing comparison, the seed mass of the selfing taxon was less than that of the outcrossing taxon. Seed mass typically differed significantly among populations within a taxon. Scanning electron microscopy showed that the seeds from all these taxa share several characteristics: a bullet to shield shape, a reticulate exotesta pattern, presence …

Use Of An Artificial Pond And Marshes By Amphibians And Reptiles In West Virginia, Vanessa A. Dozeman

Theses, Dissertations and Capstones

A farm pond approximately 40 years old located in Wayne County, West Virginia was studied to determine the ingress and egress of amphibians and reptiles. In addition to the pond, 2 small marshes were also examined. The study extended from February 2003 to November 2003. The pond is approximately 36 m long and 38 m wide and is located on a south-facing hillside at 202 m in elevation. A drift fence composed of landscaping cloth was constructed to completely encircle the site. At every 5.15 m, funnel traps were positioned on both sides of the fence. Traps were checked daily …

Calming John Bartram's Passion: Sweden's Scientific Certification Of Philadelphia's Botanist, Robert E. Savage

Biology Faculty Works

No abstract provided.

The Ecology Of Drift Algae In The Indian River Lagoon, Florida, Julie Lynnae Liss

Electronic Theses and Dissertations

To gain an understanding of the ecology of drift algae in the Indian River Lagoon system along the east coast of central Florida, four questions were addressed: 1) What is the composition and rate of accumulation of drift? 2) How much movement and turnover occurs within drift accumulations? 3) Do growth rates differ for drift versus attached algae? 4) Is there a difference in photosynthetic performance in drift versus attached algal species? Manipulative field and laboratory experiments were conducted to address these questions with the green macroalga Codium decorticatum and the red macroalga Gracilaria tikvahiae. Changes in pigment concentration and …

Foreword, Scott F. Gilbert

Biology Faculty Works

No abstract provided.

Population Genetic Structure In Nolina Brittoniana (Agavaceae), A Plant Endemic To The Central Ridges Of Florida, Rebecca W. Dolan, Rebecca Yahr, Eric S. Menges

Scholarship and Professional Work - LAS

Nolina brittoniana is endemic to the central ridges of peninsular Florida. Its scrub and sandhill habitats have suffered extensive anthropogenic modification. Analysis of isozymes from populations throughout its range revealed less genetic variation than generally reported for endemic plants. Populations were well differentiated, with significant clines in allele frequency along the north-south axis of distribution. Pair-wise F-statistics calculated at four levels of population geographic substructure revealed that current and inferred historical habitat patches had similar genetic structure. We found no evidence of recent bottlenecks or changes in genetic structure due to habitat loss and fragmentation, consistent with populations having always …

Heritability Of Kinship Pheromone In The Beaver: How Is Information About Relatedness Coded?, Lixing Sun, Dietland Muller-Schwarze

Biology Faculty Scholarship

We attempted to estimate the narrow-sense heritability of single compounds and whole profile of the anal gland secretion (AGS) with the regression method using several sets of relatives in the beaver (Castor canadensis). We used GC (gas chromatography) and GC-MS (mass spectrometry) to characterize and quantify chemical compounds in beaver AGS. We found that the heritability of single compounds seemed to be low, whereas the heritability of AGS profile appeared to be moderate. We conclude that many compounds might be involved in the coding of genetic relatedness, which was through a combination of analog and digital coding using …

Take-Off Mechanics In Hummingbirds (Trochilidae), Bret W. Tobalske, Douglas L. Altshuler, Donald R. Powers

Faculty Publications - Department of Biological & Molecular Science

Initiating flight is challenging, and considerable effort has focused on understanding the energetics and aerodynamics of take-off for both machines and animals. For animal flight, the available evidence suggests that birds maximize their initial flight velocity using leg thrust rather than wing flapping. The smallest birds, hummingbirds (Order Apodiformes), are unique in their ability to perform sustained hovering but have proportionally small hindlimbs that could hinder generation of high leg thrust. Understanding the take-off flight of hummingbirds can provide novel insight into the take-off mechanics that will be required for micro-air vehicles. During take-off by hummingbirds, we measured hindlimb forces …

Calcium Activation Of Erk Mediated By Calmodulin Kinase I, John M. Schmitt, Gary A. Wayman, Naohito Nozaki, Thomas R. Soderling

Faculty Publications - Department of Biological & Molecular Science

Elevated intracellular Ca2+ triggers numerous signaling pathways including protein kinases such as the calmodulin-dependent kinases (CaMKs) and the extracellular signal-regulated kinases (ERKs). In the present study we examined Ca2- dependent “cross-talk” between these two protein kinase families. Using a combination of pharmacological inhibitors and dominant- negative kinases (dnKinase), we identified a requirement for CaMKK acting through CaMKI in the stimulation of ERKs upon depolarization of the neuroblastoma cell line, NG108. Depolarization stimulated prolonged ERK and JNK activation that was blocked by the CaMKK inhibitor, STO-609; this inhibition of ERK activation by STO-609 was rescued by expression of a STO-609-insensitive mutant …

Variation In The Antipredator Responses Of Three Sympatric Plethodontid Salamanders To Predator-Diet Cues, Aaron M. Sullivan, Dale M. Madison, Jason R. Rohr

Faculty Publications - Department of Biological & Molecular Science

Organisms may reduce the risk of predation by responding to chemical cues from predators. Recent research shows that many species vary their antipredator response depending on the diet of the predator. We examined the responses of three plethodontid species of salamander (Plethodon cinereus, Eurycea bislineata, and Desmognathus ochrophaeus) to chemical cues from a shared snake predator (Thamnophis sirtalis). At the time of the study, Eurycea bislineata showed overlap in habitat with Plethodon cinereus and Desmognathus ochrophaeus, but Plethodon cinereus and Desmognathus ochrophaeus showed no overlap with one another. Each salamander species was presented with chemical cues from snakes fed Desmognathus …

Juvenile And Adult Survival In The Sociable Weaver (Philetairus Socius), A Southern-Temperate Colonial Cooperative Breeder In Africa, Rita Covas, Charles R. Brown, Mark D. Anderson, Mary Bomberger Brown

School of Biological Sciences: Faculty Publications

We used capture–recapture analyses to describe juvenile and adult survival from 1993 to 2001 in a population of Sociable Weavers (Philetairus socius), a colonial, cooperatively breeding passerine of southern Africa. We examined temporal variation in survival and the role that the breeding season’s length and environmental factors play in determining survival patterns in the population. Annual survival probability (mean ± SE) was 0.66 ± 0.02. In contrast to most passerines, juveniles and adults had similar survival probabilities; survival rates did not vary significantly between years. We found no relationship among temperature, rainfall, and survival. Relatively high survival rates …

Group Size And Ectoparasitism Affect Daily Survival Probability In A Colonial Bird, Charles R. Brown, Mary Bomberger Brown

School of Biological Sciences: Faculty Publications

Little is known in general about how group size or ectoparasitism affect survival in colonial animals. We estimated daily within-season survival probabilities for nesting adult and recently fledged juvenile cliff swallows (Petrochelidon pyrrhonota) at 239 colonies from 1983 to 2003 in southwestern Nebraska, USA. Some colonies had been fumigated to remove ectoparasites. We conducted mark-recapture at each colony site to estimate daily survival. There were no systematic differences between males and females in daily survival. Adults and juveniles occupying parasite-free colonies had, on average, 4.4% and 62.2% greater daily survival, respectively, than their counterparts in naturally infested colonies. …

Occurrence And Characterization Of Mercury Resistance In The Hyperthermophilic Archaeon Sulfolobus Solfataricus By Use Of Gene Disruption, James Schelert, Vidula Dixit, Viet Hoang, Jessica Simbahan, Melissa Drozda, Paul H. Blum

School of Biological Sciences: Faculty Publications

Mercury resistance mediated by mercuric reductase (MerA) is widespread among bacteria and operates under the control of MerR. MerR represents a unique class of transcription factors that exert both positive and negative regulation on gene expression. Archaea and bacteria are prokaryotes, yet little is known about the biological role of mercury in archaea or whether a resistance mechanism occurs in these organisms. The archaeon Sulfolobus solfataricus was sensitive to mercuric chloride, and low-level adaptive resistance could be induced by metal preconditioning. Protein phylogenetic analysis of open reading frames SSO2689 and SSO2688 clarified their identity as orthologs of MerA and MerR. …

Culture-Independent Analysis Of Fecal Enterobacteria In Environmental Samples By Single-Cell Mrna Profiling, Han Chen, Gomathinayagam Ponniah, Nancy Salonen, Paul H. Blum

School of Biological Sciences: Faculty Publications

A culture-independent method called mRNA profiling has been developed for the analysis of fecal enterobacteria and their physiological status in environmental samples. This taxon-specific approach determines the single-cell content of selected gene transcripts whose abundance is either directly or inversely proportional to growth state. Fluorescence in situ hybridization using fluorochrome-labeled oligonucleotide probes was used to measure the cellular concentration of fis and dps mRNA. Relative levels of these transcripts provided a measure of cell growth state and the ability to enumerate fecal enterobacterial cell number. Orthologs were cloned by inverse PCR from several major enterobacterial genera, and probes specific for …

Ecological Effects Of Transgenic Crops And The Escape Of Transgenes Into Wild Populations, Diana Pilson, Holly R. Prendeville

School of Biological Sciences: Faculty Publications

Ecological risks associated with the release of transgenic crops include nontarget effects of the crop and the escape of transgenes into wild populations. Nontarget effects can be of two sorts: (a) unintended negative effects on species that do not reduce yield and (b) greater persistence of the crop in feral populations. Conventional agricultural methods, such as herbicide and pesticide application, have large and well- documented nontarget effects. To the extent that transgenes have more specific target effects, transgenic crops may have fewer nontarget effects. The escape of transgenes into wild populations, via hybridization and introgression, could …

Tradeoffs In Community Properties Through Time In A Desert Rodent Community, Ethan P. White, S.K. Morgan Ernest, K. M. Thibault

Biology Faculty Publications

Resource limitation represents an important constraint on ecological communities, which restricts the total abundance, biomass, and community energy flux a given community can support. However, the exact relationship among these three measures of biological activity remains unclear. Here we use a simple framework that links abundance and biomass with an energetic constraint. Under constant energetic availability, it is expected that changes in abundance and biomass can result from shifts in the distribution of individual masses. We test these predictions using long-term data from a desert rodent community. Total energy use for the community has not changed directionally for 25 years, …

Similarities In Body Size Distributions Of Small-Bodied Flyingvertebrates, B. A. Maurer, J. Alroy, J. H. Brown, T. Dayan, B. Enquist, S.K. Morgan Ernest, E. Hadly, J. P. Haskell, D. Jablonski, K. E. Jones, D. M. Kaufman, K. Lyons, K. Niklas, W. Porter, K. Roy, F. A. Smith, B. Tiffney, M. R. Willig

Biology Faculty Publications

Since flight imposes physical constraints on the attributes of a flying organism, it is expected that the distribution of body sizes within clades of small-bodied flying vertebrates should share a similar pattern that reflects these constraints. We examined patterns in similarities of body mass distributions among five clades of small-bodied endothermic vertebrates (Passeriformes, Apodiformes + Trochiliformes, Chiroptera, Insectivora, Rodentia) to examine the extent to which these distributions are congruent among the clades that fly as opposed to those that do not fly. The body mass distributions of three clades of small-bodied flying vertebrates show significant divergence from the distributions of …

Two-Phase Species-Time Relationships In North American Land Birds, Ethan P. White

Biology Faculty Publications

The species-time relationship (STR) is a macroecological pattern describing the increase in the observed species richness with the length of time censused. Understanding STRs is important for understanding the ecological processes underlying temporal turnover and species richness. However, accurate characterization of the STR has been hampered by the influence of sampling. I analyzed species-time relationships for 521 breeding bird survey communities. I used a model of sampling effects to demonstrate that the increase in richness was not due exclusively to sampling. I estimated the time scale at which ecological processes became dominant over sampling effects using a two-phase model combining …

Temperature-Dependent Oxygen Limitation In Insect Eggs, H. Arthur Woods, Ryan I. Hill

College of the Pacific Faculty Articles

Most terrestrial insect embryos support metabolism with oxygen from the environment by diffusion across the eggshell. Because metabolism is more temperature sensitive than diffusion, embryos should be relatively oxygen-limited at high temperatures. We tested whether survival, development time and metabolism of eggs of a moth, Manduca sexta, were sensitive to experimentally imposed variation in atmospheric oxygen availability (5–50 kPa; normoxia at sea level is 21 kPa) across a range of biologically realistic temperatures. Temperature–oxygen interactions were apparent in most experiments. Hypoxia affected survival more strongly at warmer temperatures. Metabolic rates, measured as rates of CO₂ emission, were virtually insensitive …

Hatching Asynchrony, Survival, And The Fitness Of Alternative Adult Morphs In Ambystoma Talpoideum, Travis J. Ryan

Scholarship and Professional Work - LAS

The mole salamander, Ambystoma talpoideum, exhibits both aquatic (gilled) and terrestrial (metamorphosed) adult morphologies. Previous studies have shown the existence of body-size advantages associated with the terrestrial morph in A. talpoideum and other polymorphic salamanders (e.g., A. tigrinum). However, aquatic adult A. talpoideum mature at a younger age and often breed earlier than terrestrial adults. We tested the hypothesis that early maturation and reproduction in aquatic adults increase fitness (irrespective of body size). We reared larval A. talpoideum in mesocosms and varied the timing of hatching, with early-hatching larvae representing the offspring from early-breeding aquatic adults, and late-hatching larvae representing …

Full-Length Mitochondrial Genome Sequence Of Biomphalaria Glabrata, Coen Adema

Biomphalaria Genome Initiative

No abstract provided.

Hydrologic Variability, Organic Matter Supply, Anddenitrification In The Garonne River Ecosystem, Michelle A. Baker, P. Vervier

Biology Faculty Publications

1. Groundwater nitrate contamination has become a worldwide problem as increasing amounts of nitrogen fertilisers are used in agriculture. Alluvial groundwater is uniquely juxtaposed between soils and streams. Hydrological connections among these subsystems regulate nutrient cycling.

2. We measured denitrification using an in situ acetylene‐block assay in a nitrate‐contaminated portion of the Garonne River catchment along a gradient of surface water–ground water mixing during high (snowmelt) and low flow.

3. During high flow (mid‐April to early June) the water table rose an average of 35 cm and river water penetrated the subsurface to a great extent in monitoring wells. Denitrification …

Snakes Of The United States And Canada: Natural History And Care In Captivity, Alan H. Savitzky

Biology Faculty Publications

No abstract provided.

Temporal Dynamics In The Structure Andcomposition Of A Desert Rodent Community, K. M. Thibault, Ethan P. White, S.K. Morgan Ernest

Biology Faculty Publications

The rank-abundance distribution (RAD) represents the manner in which species divide resources. Community-specific division rules that determine resource allocation among species, and thereby the shape of the RAD, have been hypothesized to account for observed stability of local species richness over time. While the shape of the RAD has been well studied, the temporal dynamics of this distribution have received much less attention. Here we assess changes in the shape of the RAD through time in a desert rodent community in Arizona (USA). Because energy use may be more appropriate for studying resource division than abundance, we also evaluate an …

Similarity Of Mammalian Body Size Acrossthe Taxonomic Hierarchy And Across Space And Time, F. A. Smith, J. H. Brown, J. P. Haskell, S. K. Lyons, J. Alroy, E. L. Charnov, T. Dayan, B. J. Enquist, S.K. Morgan Ernest, E. A. Hadly, K. E. Jones, D. M. Kaufman, P. A. Marquet, B. A. Maurer, K. J. Niklas, W. P. Porter, B. Tiffney, M. R. Willig

Biology Faculty Publications

Although it is commonly assumed that closely related animals are similar in body size, the degree of similarity has not been examined across the taxonomic hierarchy. Moreover, little is known about the variation or consistency of body size patterns across geographic space or evolutionary time. Here, we draw from a data set of terrestrial, nonvolant mammals to quantify and compare patterns across the body size spectrum, the taxonomic hierarchy, continental space, and evolutionary time. We employ a variety of statistical techniques including “sib-sib” regression, phylogenetic autocorrelation, and nested ANOVA. We find an extremely high resemblance (heritability) of size among congeneric …

Comparison Of Crenarchaeal Consortia Inhabiting The Rhizosphere Of Diverse Terrestrial Plants With Those In Bulk Soil In Native Environments, Marek K. Sliwinski, Robert M. Goodman

Faculty Work

To explore whether the crenarchaeal consortium found in the rhizosphere is distinct from the assemblage of crenarchaeotes inhabiting bulk soil, PCR-single-stranded-conformation polymorphism (PCR-SSCP) profiles were generated for 76 plant samples collected from native environments. Divergent terrestrial plant groups including bryophytes (mosses), lycopods (club mosses), pteridophytes (ferns), gymnosperms (conifers), and angiosperms (seed plants) were collected for this study. Statistical analysis revealed significant differences between rhizosphere and bulk soil PCR-SSCP profiles (Hotelling paired T2 test, P < 0.0001), suggesting that a distinct crenarchaeal consortium is associated with plants. In general, phylotype richness increased in the rhizosphere compared to the corresponding bulk soil, although the range of this increase was variable. Examples of a major change in rhizosphere (versus bulk soil) PCR-SSCP profiles were detected for all plant groups, suggesting that crenarchaeotes form associations with phylogenetically diverse plants in native environments. In addition, examples of minor to no detectable difference were found for all terrestrial plant groups, suggesting that crenarchaeal associations with plants are mediated by environmental conditions.

Seasonal Use Of An Abandoned Mine And Summer Maternity Roost By Northern Bats (Myotis Septentrionalis), Heather Rae Fraser

Masters Theses

No abstract provided.