Biology Commons^™

The Distribution Of Fox Squirrel (Sciurus Niger) Leaf Nests Within Forest Fragments In Central Indiana, Carmen M. Salsbury, Rebecca W. Dolan, Emily B. Pentzer

Scholarship and Professional Work - LAS

We examined the abundance and placement of leaf nests by fox squirrels in six urban woodlots in central Indiana ranging in size from 1.06 to 8.28 ha. Four of the woodlots were disturbed, or subject to extensive human impact, whereas the remaining two were nature preserves. We counted all leaf nests present in each woodlot and recorded nest tree characteristics. We then conducted a quantitative vegetation analysis of trees present and estimated percentages of herbaceous and shrub cover along a minimum of two 100 m transects at each site. Fox squirrels showed a preference to build nests in certain species …

Core Concepts In Biochemistry And Molecular Biology In An Integrated Mbbs Curriculum, M P. Iqbal

Department of Biological & Biomedical Sciences

No abstract provided.

Importance Of Outcrossing For Fruit Production In Slickspot Peppergrass, Lepidium Papilliferum L. (Brassicaceae), Ian Robertson

Biology Faculty Publications and Presentations

Plants with insect-mediated pollination are often assumed to be obligate outcrossers; i.e., pollen must be supplied from flowers of other individuals for pollination and subsequent fruit production. Indeed, many flowers with insect-mediated pollination exhibit incompatibility to their own pollen or have a separation in time between pollen production and maturation of the stigma on a given flower (Proctor et al. 1996). However, because the breeding systems of plants are diverse and include varying levels of outcrossing and selfing, experiments are required to determine whether pollination in a particular species occurs via outcrossing, self-pollination, or both. Here I report the results …

Soil Fungi Alter Interactions Between The Invader Centaurea Maculosa And North American Natives, Ragan M. Callaway, Giles C. Thelen, Sara Barth, Philip W. Ramsey, James E. Gannon

Biological Sciences Faculty Publications

Soil microbes may affect the way exotic invasive plants interact with native neighbors. We investigated the effects of soil fungi on interactions between the invasive weed Centaurea maculosa (spotted knapweed) and six species native to the intermountain prairies of the northwestern United States. We also compared the effect of C. maculosa on the composition of the soil microbial community to that of the native species. In the field, fungicide (Benomyl) reduced AM mycorrhizal colonization of C. maculosa roots by >80%. Fungicide did not significantly reduce non-AM fungi. When grown alone, the biomass of C. maculosa was not affected by the …

Inheritance Of Trunk Banding In The Tetra (Gymnocorymbus Ternetzi Characidae), Jack Frankel

Department of Biology Faculty Publications

The tetra (Gymnocorymbus ternetzi) exhibits two phenotypes associated with trunk banding. Fish possess either a smoky-gray coloration with two prominent black vertical bands located directly behind the operculum (black tetra) or a lighter coloration and lack these bands (white skirt tetra). Segregation patterns observed from the progenies of 11 different crosses suggest that the inheritance of these phenotypes is controlled by two autosomal loci acting in a complementary fashion, with dominance at both loci required for the expression of the darker, banded phenotype.

Re-Assessment Of Carrying Capacities In The Ashburton River Catchment, Alan L. Payne, A M E Van Vreeswyk, K A. Leighton

Agriculture reports

Potential carrying capacities for land systems in the catchment of the Ashburton River were first estimated in 1983 as a result of a rangeland survey of the area undertaken during 1976, 1977 and 1978. Potential carrying capacity (termed capability capacity in the 1988 report) is a suggested sustainable level of use assuming that all pastures are in good range condition, the entire station is adequately watered for the effective management of livestock and seasonal conditions are average.

The Ashburton Land Conservation District Committee had previously requested a re-assessment of carrying capacities for Ashburton stations following the widespread establishment of buffel …

Particle Removal Rates By The Mud Shrimp Upogebia Pugettensis, Its Burrow, And A Commensal Clam: Effects On Estuarine Phytoplankton Abundance, Blaine D. Griffen, Theodore H. Dewitt, Chris Langdon

Faculty Publications

The burrowing shrimp Upogebia pugettensis is an abundant intertidal invertebrate of Pacific Northwest, USA bays and estuaries where it lives commensally with the bivalve Cryptomya californica. Suspension-feeding activities by the shrimp and by its commensal clam, as well as particle settlement within the burrow, represent 3 different components that could remove phytoplankton from water drawn into shrimp burrows. These 3 components together comprise what we call the ‘U. pugettensis shrimp-burrow complex’. In laboratory experiments, we measured particle removal by each of these components. Our results indicated that U. pugettensis itself is responsible for filtering the majority of phytoplankton removed …

Drosophila As An Emerging Model To Study Metastasis, Madhuri Kango-Singh, Georg Halder

Biology Faculty Publications

Metastasis is the primary cause of human cancer-related deaths. Two recent studies describe a system for testing how multiple genetic events synergize to promote neoplastic growth and metastasis in Drosophila, paving the way for systematic approaches to understanding metastasis using the powerful tools of Drosophila genetics.

Phylogeny Of The Polyneopterous Insects With Emphasis On Plecoptera: Molecular And Morpological Evidence, Matthew Dana Terry

Theses and Dissertations

Polyneoptera is an assemblage of eleven insect orders comprising the "orthopteroid" insects. It includes familiar insects such as grasshoppers, roaches, termites, earwigs and preying mantises; as well as the more obscure web-spinners, angel insects and ice-crawlers. We present a phylogenetic analysis of the polyneopteran orders based on 18S rDNA, 28S rDNA, Histone 3, and a coded morphology matrix for an extensive sampling of taxa. We investigate the use of congruence between separate datasets as an a priori measure of alignment quality. Our results support the paraphyly of Polyneoptera, the monophyly of Dictyoptera, sister taxon relationships between Embiidina + Phasmatodea and …

Phylogenetic Systematics And Evolution Within The Family Scincidae, Alison Swindle Whiting

Theses and Dissertations

Scincidae (skinks) comprise one of the largest families of lizards, and the more than 1300 species show great variation in body size and form, and are found worldwide in a diversity of habitats. The group presents many interesting questions ranging from the colonization of oceanic islands, to the evolution of limb loss, yet most of these and other questions remain understudied. The purpose of this dissertation is to use multiple mitochonidrial and nuclear DNA markers in connection with current cladistic methods to address evolutionary questions at many levels within Scincidae. In chapter one, a molecular phylogenetic study, based on six …

The Cohesion Protein Ord Is Required For Homologue Bias During Meiotic Recombination, Hayley A. Webber, Louisa Howard, Sharon E. Bickel

Dartmouth Scholarship

During meiosis, sister chromatid cohesion is required for normal levels of homologous recombination, although how cohesion regulates exchange is not understood. Null mutations in orientation disruptor (ord) ablate arm and centromeric cohesion during Drosophila meiosis and severely reduce homologous crossovers in mutant oocytes. We show that ORD protein localizes along oocyte chromosomes during the stages in which recombination occurs. Although synaptonemal complex (SC) components initially associate with synapsed homologues in ord mutants, their localization is severely disrupted during pachytene progression, and normal tripartite SC is not visible by electron microscopy. In ord germaria, meiotic double strand breaks appear …

Distribution And Dynamics Of Nitrogen And Microbial Plankton In Southern Lake Michigan During Spring Transition 1999-2000, Wayne S. Gardner, Peter J. Lavrentyev, Joann F. Cavaletto, Mark J. Mccarthy, B. J. Eadie, Thomas Johengen, James Cotner

Biology Faculty Research

[ 1] Ammonium and amino acid fluxes were examined as indicators of N and microbial food web dynamics in southern Lake Michigan during spring. Either (NH4+)-N-15 or a mixture of N-15-labelled amino acids (both at 4 muM N final concentration) was added to Lake Michigan water. Net fluxes were measured over 24 h under natural light and dark conditions using deck-top incubators and compared to microbial food web characteristics. Isotope dilution experiments showed similar light and dark NH4+ regeneration rates at lake ( 6 versus 5 nM N h(-1)) and river-influenced ( 20 versus 24 nM N h(-1)) sites. Ammonium …

A 1200 Year Record Of Hydrologic Variability In The Sierra Nevada From Sediments In Walker Lake, Nevada, Fasong Yuan, Braddock K. Linsley, Steve P. Lund, John P. Mcgeehin

Biological, Geological, and Environmental Faculty Publications

Measurements of the oxygen isotopic composition (δ¹⁸O) of the total inorganic carbon (TIC) fraction from cored sediments of Walker Lake, Nevada, were conducted at an average resolution of ∼3 years per sample over the last 1200 years. On the basis of radiocarbon analysis on the total organic carbon (TOC) fraction, a δ¹⁸O time series was created to reconstruct changes in hydrologic conditions back to AD 800. The timings of variations in the TIC δ¹⁸O record are generally consistent with the tree ring-based Sacramento River flow record spanning AD 869 to 1977, indicating that Walker …

Bayesian Statistics For Biological Data: Pedigree Analysis, William D. Stansfield, Matthew A. Carlton

Biological Sciences

No abstract provided.

Fossil Tuna Vertebrae Punctured By Istiophorid Billfishes, Vincent P. Schneider, Harry L. Fierstine

Biological Sciences

No abstract provided.

A Transgenic Marker For Newly Born Granule Cells In Dentate Gyrus, Linda S. Overstreet, Shane T. Hentges, Viviana F. Bumaschny, Flavio S.J. De Souza, James L. Smart, Andrea M. Santangelo, Malcolm J. Low, Gary L. Westbrook, Marcelo Rubinstein

Faculty Publications - Department of Biological & Molecular Science

Neurogenesis in the dentate gyrus continues into adulthood, yet little is known about the function of newly born neurons or how they integrate into an existing network of mature neurons. We made transgenic mice that selectively and transiently express enhanced green fluorescent protein (EGFP) in newly born granule cells of the dentate gyrus under the transcriptional control of proopiomelanocortin (POMC) genomic sequences. Analysis of transgenic pedigrees with truncation or deletion mutations indicated that EGFP expression in the dentate gyrus required cryptic POMC promoter regions dispensable for arcuate hypothalamic or pituitary expression. Unlike arcuate neurons, dentate granule cells did not express …

Effects Of Body Size And Temperature On Population Growth, Van M. Savage, James F. Gillooly, James H. Brown, Geoffrey B. West, Eric Charnov

Biology Faculty & Staff Publications

For at least 200 years, since the time of Malthus, population growth has been recognized as providing a critical link between the performance of individual organisms and the ecology and evolution of species.We present a theory that shows how the intrinsic rate of exponential population growth, , and the carrying capacity, rmax K, depend on individual metabolic rate and resource supply rate. To do this, we construct equations for the metabolic rates of entire populations by summing over individuals, and then we combine these population-level equations with Malthusian growth. Thus, the theory makes explicit the relationship between rates of resource …

A Dominant-Negative Fur Mutation In Bradyrhizobium Japonicum, Heather P. Benson, Kristin Levier, Mary Lou Guerinot

Dartmouth Scholarship

In many bacteria, the ferric uptake regulator (Fur) protein plays a central role in the regulation of iron uptake genes. Because iron figures prominently in the agriculturally important symbiosis between soybean and its nitrogen-fixing endosymbiont Bradyrhizobium japonicum, we wanted to assess the role of Fur in the interaction. We identified a fur mutant by selecting for manganese resistance. Manganese interacts with the Fur protein and represses iron uptake genes. In the presence of high levels of manganese, bacteria with a wild-type copy of the furgene repress iron uptake systems and starve for iron, whereas fur mutants fail to …

2-O-Methylation Of Fucosyl Residues Of A Rhizobial Lipopolysaccharide Is Increased In Response To Host Exudate And Is Eliminated In A Symbiotically Defective Mutant, K. Dale Noel, Jodie M. Box, Valerie J. Boone

Biological Sciences Faculty Research and Publications

When Rhizobium etli CE3 was grown in the presence of Phaseolus vulgaris seed extracts containing anthocyanins, its lipopolysaccharide (LPS) sugar composition was changed in two ways: greatly decreased content of what is normally the terminal residue of the LPS, di-O-methylfucose, and a doubling of the 2-O-methylation of other fucose residues in the LPS O antigen. R. etli strain CE395 was isolated after Tn5 mutagenesis of strain CE3 by screening for mutant colonies that did not change antigenically in the presence of seed extract. The LPS of this strain completely lacked 2-O-methylfucose, regardless of whether anthocyanins …

Seasonal Use Of Bridges By Rafinesque's Big-Eared Bat, Corynorhinus Rafinesquii, In Southern Mississippi, Austin W. Trousdale, David C. Beckett

Faculty Publications

We conducted surveys of concrete bridges in southern Mississippi from 2000–2002 to determine the phenological pattern of use by Rafinesque's big-eared bat, Corynorhinus rafinesquii. The earliest dates on which we located maternity colonies were 9 March 2000, 20 April 2001, and 15 May 2002. Maternity colonies increased in size and abundance as spring progressed. Pups were born in mid- to late May (first observed 12 May 2000, 15 May 2001, 27 May 2002) and nursed through midsummer (lactating females last captured 14 July 2000, 25 July 2001, 16 July 2002). Colony size and percentage of bridges occupied by bats declined …

Bacterial Succession In A Petroleum Land Treatment Unit, Christopher W. Kaplan, Christopher L. Kitts

Biological Sciences

Bacterial community dynamics were investigated in a land treatment unit (LTU) established at a site contaminated with highly weathered petroleum hydrocarbons in the C(10) to C(32) range. The treatment plot, 3,000 cubic yards of soil, was supplemented with nutrients and monitored weekly for total petroleum hydrocarbons (TPH), soil water content, nutrient levels, and aerobic heterotrophic bacterial counts. Weekly soil samples were analyzed with 16S rRNA gene terminal restriction fragment (TRF) analysis to monitor bacterial community structure and dynamics during bioremediation. TPH degradation was rapid during the first 3 weeks and slowed for the remainder of the 24-week project. A sharp …

Spatial Heterogeneity Of Crenarchaeal Assemblages Within Mesophilic Soil Ecosystems As Revealed By Pcr-Single-Stranded Conformation Polymorphism Profiling, Marek K. Sliwinski

Faculty Work

Microbial ecologists have discovered novel rRNA genes (rDNA) in mesophilic soil habitats worldwide, including sequences that affiliate phylogenetically within the division Crenarchaeota (domain Archaea). To characterize the spatial distribution of crenarchaeal assemblages in mesophilic soil habitats, we profiled amplified crenarchaeal 16S rDNA sequences from diverse soil ecosystems by using PCR-single-stranded-conformation polymorphism (PCR-SSCP) analysis. PCR-SSCP profiles provide a measure of relative microbial diversity in terms of richness (number of different phylotypes as estimated from the number of unique PCR-SSCP peaks) and evenness (abundance of each phylotype as estimated from the relative area under a peak). Crenarchaeal assemblages inhabiting prairie, forest, …

In Situ Cardiac Performance Of Pacific Bluefin Tuna Hearts In Response To Acute Temperature Change, Jason M. Blank, Jeffery M. Morrissette, Ana M. Landeira-Fernandez, Susanna B. Blackwell, Thomas D. Williams, Barbara A. Block

Biological Sciences

This study reports the cardiovascular physiology of the Pacific bluefin tuna (Thunnus orientalis) in an in situ heart preparation. The performance of the Pacific bluefin tuna heart was examined at temperatures from 30°C down to 2°C. Heart rates ranged from 156 beats min^–1 at 30°C to 13 beats min^–1 at 2°C. Maximal stroke volumes were 1.1 ml kg^–1 at 25°C and 1.3 ml kg^–1 at 2°C. Maximal cardiac outputs were 18.1 ml kg^–1 min^–1 at 2°C and 106 ml kg^–1 min^–1 at 25°C. These data indicate that cardiovascular function in …

Mer1p Is A Modular Splicing Factor Whose Function Depends On The Conserved U2 Snrnp Protein Snu17p, Marc Spingola, Javier Armisen, Manuel Ares

Biology Department Faculty Works

Mer1p activates the splicing of at least three pre‐mRNAs (AMA1, MER2, MER3) during meiosis in the yeast Saccharomyces cerevisiae. We demonstrate that enhancer recognition by Mer1p is separable from Mer1p splicing activation. The C‐terminal KH‐type RNA‐binding domain of Mer1p recognizes introns that contain the Mer1p splicing enhancer, while the N‐terminal domain interacts with the spliceosome and activates splicing. Prior studies have implicated the U1 snRNP and recognition of the 5′ splice site as key elements in Mer1p‐activated splicing. We provide new evidence that Mer1p may also function at later steps of spliceosome assembly. First, Mer1p can activate splicing of introns …

Variation In Vasotocin Immunoreactivity In The Brain Of Recently Isolated Populations Of A Death Valley Pupfish, Cyprinodon Nevadensis, Sean C. Lema, Gabrielle A. Nevitt

Biological Sciences

Pupfishes in the Death Valley region of California and Nevada comprise a monophyletic group of populations that became isolated in remote streams and springs over the past 20,000 years. These aquatic habitats show considerable ecological diversity, and allopatric populations have evolved differences in morphology and behavior. Here we investigated whether the divergence of pupfish populations in Death Valley might be associated with changes in arginine vasotocin (AVT). We used immunocytochemistry to compare the expression of AVT in the brain of Amargosa pupfish (Cyprinodon nevadensis) from two Death Valley populations: (1) the Amargosa River—a highly variable desert stream containing …

Variation In Sulfide Tolerance Of Photosystem Ii In Phylogenetically Diverse Cyanobacteria From Sulfidic Habitats, Scott R. Miller, Brad M. Bebout

Biological Sciences Faculty Publications

Physiological and molecular phylogenetic approaches were used to investigate variation among 12 cyanobacterial strains in their tolerance of sulfide, an inhibitor of oxygenic photosynthesis. Cyanobacteria from sulfidic habitats were found to be phylogenetically diverse and exhibited an approximately 50-fold variation in photosystem II performance in the presence of sulfide. Whereas the degree of tolerance was positively correlated with sulfide levels in the environment, a strain's phenotype could not be predicted from the tolerance of its closest relatives. These observations suggest that sulfide tolerance is a dynamic trait primarily shaped by environmental variation. Despite differences in absolute tolerance, similarities among strains …

Ethiopian Soils Harbor Natural Populations Of Rhizobia That Form Symbioses With Common Bean (Phaseolus Vulgaris L.), Serawit Kassa, Desta Beyene, Franklin Ampy, Amha Asseffa, Tadesse Gebremedhin, Peter Van Berkum

Department of Biology Faculty Publications

The diversity and taxonomic relationships of 83 bean-nodulating rhizobia indigenous to Ethiopian soils were characterized by PCR-RFLP of the internally transcribed spacer (ITS) region between the 16S and 23S rRNA genes, 16S rRNA gene sequence analysis, multilocus enzyme electrophoresis (MLEE), and amplified fragment-length polymorphism. The isolates fell into 13 distinct genotypes according to PCR-RFLP analysis of the ITS region. Based on MLEE, the majority of these genotypes (70%) was genetically related to the type strain of Rhizobium leguminosarum. However, from analysis of their 16S rRNA genes, the majority was placed with Rhizobium etli. Transfer and recombination of the 16S rRNA …

Maintenance Of Androdioecy In The Freshwater Shrimp, Eulimnadia Texana: Field Estimates Of Inbreeding Depression And Relative Male Survival, Stephen C. Weeks, Richard L. Bernhardt

Biology Faculty Research

Androdioecy is a rare form of reproduction, only found in a few plant and animal species, wherein males co-exist with hermaphrodites. This particular form of mixed mating (mixtures of outcrossing and self-fertilization) is predicted to be evolutionarily unstable, with most androdioecious populations thought to be in a transition from hermaphroditism to dioecy, or vice versa. One well-studied androdioecious species is the freshwater clam shrimp Eulimnadia texana. A model by Otto et al. (1993), exploring the stability of this androdioecious system, predicts that males can co-exist with hermaphrodites when males fertilize an average of over twice the number of offspring that …

D1s80 Single-Locus Discrimination Among African Populations, Rene J. Herrera, Leslie R. Adrien, Luis M. Ruiz, Nahir Y. Sanabria, George Duncan

Biology Faculty Articles

The highly polymorphic D1S80 locus has no known genetic function. However, this variable number of tandem repeats (VNTR) locus has been highly valuable in forensic identification. In this study we report the allele and genotype frequencies of five African populations (Benin, Cameroon, Egypt, Kenya, and Rwanda), which can be used as databases to help characterize populations and identify individuals. The allele frequencies were used to infer genetic associations through phylogenetic, principal component, and G test statistical analyses. Compliance with Hardy-Weinberg equilibrium expectations was determined as were F_ST estimates, theta p values, and power of discrimination assessment for each population. …

A Comparison Between Point- And Semi-Continuous Sampling For Assessing Body Temperature In A Free-Ranging Ectotherm, Emily N. Taylor, Dale F. Denardo, Michael A. Malawy

Biological Sciences

We used intracoelomically implanted temperature dataloggers to obtain semi-continuous body temperature data and establish monthly thermal profiles for free-ranging rattlesnakes. We mimicked random and non-random point-sampling methods by selecting a single daily data point from all values or from restricted times of day to reflect common point-sampling constraints. Thermal profiles generated from point-sampling differed from those generated from semi-continuous sampling, and this difference was more apparent when point-sampling was non-random. We conclude that semi-continuous sampling provides a better estimate of thermal profiles, and that point-sampling methods are highly sensitive to deviations from true randomness.