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Articles 1 - 30 of 121
Full-Text Articles in Biology
Evolution Of The Human Eye: As Compared To Other Vertebrates, Madison Queener
Evolution Of The Human Eye: As Compared To Other Vertebrates, Madison Queener
Honors Projects
There are three different types of eyes, the simple eye, the compound eye, and the camera eye (Cambridge Dictionary) (Myer-Rochow, 2014) (UCL, 2020). The retina of the eye has evolved and adapted to fit the lifestyles of the respective organisms. Because of this part of the eye, organisms are able to see different colors and use light to define the world using photoreceptors. Photoreceptors are rod cells, which are light sensitive and process light, and cone cells, which perceive the different color wavelengths, that pass visual information to the brain (Kazilek, 2010). About 5% of the photoreceptors in the retinas …
Exploring The Longitudinal Effects: Non-Traditional Pedagogies And Practical Learning On Biology Education And Medical Understanding, Thomas Ziebro
Exploring The Longitudinal Effects: Non-Traditional Pedagogies And Practical Learning On Biology Education And Medical Understanding, Thomas Ziebro
Honors Projects
Medical disinformation is becoming a rampant problem in the United States, and the Covid-19 pandemic highlighted it. There have been attempts to fight the problem at the source through fact verification. These attempts have been unsuccessful. This paper investigates the efficacy of non-traditional pedagogies and the correlation between them and an individual perceived and practical ability to understand their primary care provider. The purpose of this research was to establish whether non-traditional pedagogies at the secondary and post-secondary level are more effective than traditional lecture-based instruction. The research was conducted through an anonymous cross-sectional survey which included questions about educational …
Mitochondrial Adaptation In The Green Crab Hybrid Zone Of The Gulf Of Maine, Jared Lynch
Mitochondrial Adaptation In The Green Crab Hybrid Zone Of The Gulf Of Maine, Jared Lynch
Honors Projects
The mitochondrial genome has historically been relegated to a neutral genetic marker, but new evidence suggests mitochondrial DNA to be a target for adaptation to environmental stress. The invasive European green crab (Carcinus maenas) exemplifies this in the Gulf of Maine’s hybrid zone, where interbreeding populations exhibit thermal tolerances influenced by mitochondrial genotype. To better understand the mechanism behind this phenomenon, the effect of mitochondrial genotype on mitochondrial activity was tested by measuring mtDNA copy number (mtCN) and the activity of complex I, II, and IV of the electron transport system via high-resolution respirometry. Mitochondria isolated from frozen …
Modulation Of The Crustacean Cardiac Neuromuscular System By The Sly Neuropeptide Family, Grant Griesman
Modulation Of The Crustacean Cardiac Neuromuscular System By The Sly Neuropeptide Family, Grant Griesman
Honors Projects
Central pattern generators (CPGs) are neuronal networks that produce rhythmic motor output in the absence of sensory stimuli. Invertebrate CPGs are valuable models of neural circuit dynamics and neuromodulation because they continue to generate fictive activity in vitro. For example, the cardiac ganglion (CG) of the Jonah crab (Cancer borealis) and American lobster (Homarus americanus) contains nine electrochemically coupled neurons that fire bursts of action potentials to trigger a heartbeat. The CG is modulated by neuropeptides, amines, small molecule transmitters, gases, and mechanosensory feedback pathways that enable flexibility and constrain output. One such modulator, the …
Comparison Of Globalfiler Pcr Amplification Inhibition Due To Humic Acid And Canine Dna, Mckinzie Bundy
Comparison Of Globalfiler Pcr Amplification Inhibition Due To Humic Acid And Canine Dna, Mckinzie Bundy
Honors Projects
To obtain a DNA profile from a crime scene sample, the DNA must undergo amplification through the Polymerase Chain Reaction (PCR). The PCR process can be inhibited by factors that increase DNase I activity or by factors that interfere with Taq polymerase binding to the DNA. This study compares inhibition to the PCR process caused by dog DNA with inhibition caused by humic acid. The GlobalFiler PCR Amplification Kit was tested using mixtures of dog DNA and human control DNA and mixtures of humic acid and human control DNA. The profiles obtained from these mixtures were then analyzed for instances …
Functional Redundancy Of A Non-Native Foundation Species (Eelgrass, Zostera Japonica) Across Intertidal Stress Gradients, S. Maria Garcia
Functional Redundancy Of A Non-Native Foundation Species (Eelgrass, Zostera Japonica) Across Intertidal Stress Gradients, S. Maria Garcia
Honors Projects
Non-native species foundation species can alter ecosystems in both positive and negative ways. The creation of habitat can be beneficial to native species when they provide a limiting resource or in a stressful environment. Yet this creation of habitat can also be detrimental by replacing native species and/or facilitating the presence of more non-native species. In Willapa Bay, WA, a non-native foundation species, Zostera japonica, co-exists with the native foundation species Zostera marina. Zostera japonica persists at the higher intertidal in monocultures, the two species overlap in the mid intertidal, and Z. marina persists in monocultures in the low intertidal. …
Host And Symbiont-Specific Patterns Of Gene Expression In Response To Cold Stress In The Temperate Coral Astrangia Poculata, Kellie Navarro
Host And Symbiont-Specific Patterns Of Gene Expression In Response To Cold Stress In The Temperate Coral Astrangia Poculata, Kellie Navarro
Honors Projects
The coral Astrangia poculata inhabits hard-bottom environments from the Gulf of Mexico to Massachusetts and withstands large seasonal variation in temperature (–2 to 26 °C). This thermal range and its ability to live in a facultative symbiosis makes this species an ideal model system for investigating stress responses to ocean temperature variation. Although it has been shown that aposymbiotic A. poculata upregulates more genes in response to cold stress than heat stress, the transcriptomic response of the holobiont (coral host and symbiotic algae) to stress is unknown. In this study, we characterize changes in gene expression in both the host …
Standardization Of A Latent Blood Visualizer Based Upon Dna Degradation, Kailey M. Van 'T Hoff
Standardization Of A Latent Blood Visualizer Based Upon Dna Degradation, Kailey M. Van 'T Hoff
Honors Projects
Latent blood visualizers have been used in forensic science since 1937 beginning with Luminol. These visualizers through different types of reactions react with trace amounts of blood that cannot be seen with the naked human eye. These different reactions produce color that can then be seen by examiners. The four types of latent blood visualizers that were compared is luminol, leuco crystal violet, fluorescein, and bluestar. Luminol and bluestar use chemiluminescence, fluorescein uses florescent, and leuco crystal violet uses oxidation to react with iron in hemoglobin. At crime scenes when blood is detected which includes with the blood visualizers the …
Autopsy V. Virtopsy: A New Approach For Postmortem Forensic Examination, Nicole Elaine Lawson
Autopsy V. Virtopsy: A New Approach For Postmortem Forensic Examination, Nicole Elaine Lawson
Honors Projects
Virtopsy as a potential new standard in forensic science investigation in the place of a conventional autopsy. In recent years there have been new advancements across the forensic field and in the scientific world as a whole. These advancements have changed many approaches bringing new capabilities and new challenges and pushback. This report takes a specific interest in the evolution of forensic autopsy. With improvements such as magnetic resonance imaging (MRI), computed tomography scan (CT), X-Rays, and other approaches a new term and technique have been coined Virtopsy. As this new potential approach has come to light the resistance against …
Cache Like A Squirrel: Effects Of Long Term Storage On Crude Fat Content Of Q. Palustris And Q. Alba Acorns, Cheyenne T. Villarosa, Sabrina Volponi, Timothy A. Kreps, Tamara L. Johnstone-Yellin
Cache Like A Squirrel: Effects Of Long Term Storage On Crude Fat Content Of Q. Palustris And Q. Alba Acorns, Cheyenne T. Villarosa, Sabrina Volponi, Timothy A. Kreps, Tamara L. Johnstone-Yellin
Honors Projects
Quercus palustris and Quercus alba acorns are a primary component in many wild animal diets, particularly during preparation for winter. As such, they provide a natural, easily gathered food staple for wildlife recovering in rehabilitation facilities. We examined whether collection and temperature-controlled storage methods differentially affect the nutritional deterioration of crude fat in acorns to assess both caching by wildlife and to provide recommendations to rehabilitators. We collected acorns from Q. palustris in 2020 (N=8) and Q. alba in 2017 (N=11) in Bridgewater, VA, USA. Acorns were dried for 7 days using a fan or for 30 minutes in an …
Vectors, Pathogens And Climate Change: How Will Human Health Be Affected?, Joseph T. Barry
Vectors, Pathogens And Climate Change: How Will Human Health Be Affected?, Joseph T. Barry
Honors Projects
This paper details how ongoing climate change will continue to affect the future of humanity. More specifically, this paper seeks to begin a conversation about how climate change impacts vectors and vector-borne pathogens and how both of these ultimately impact the future of human health. Three different vectors and three different pathogens are compared to provide an overview of how climate change may benefit these vectors and their associated pathogens. The vectors species selected for this comparative study are: (i) mosquitoes (Diptera, family Culicine), (ii) ticks (superorder Parasitiformes, order Ixodida), and (iii) kissing bugs (Hemiptera, subfamily Triatominae). Yellow fever virus …
An Overview Of The Current Research On Epiphyte Ecology, Kelsey Inman-Carter
An Overview Of The Current Research On Epiphyte Ecology, Kelsey Inman-Carter
Honors Projects
Epiphytes are non-parasitic, photosynthetic organisms that depend on other photosynthetic host organisms for support. Epiphytes can be found both in aquatic and terrestrial habitats. The interactions between epiphytes and their hosts can vary based on both their habitat and the features of individual hosts. This review explores the many facets of epiphyte research, including: the diversity of epiphytes in aquatic and terrestrial habitats; the effects of host-epiphyte interactions on the hosts; and the abiotic and biotic interactions that together determine epiphyte community composition.
Use Of Intramodal Odor Cues In Shelter Recognition By An Amblypygid, Nathan Bostelman
Use Of Intramodal Odor Cues In Shelter Recognition By An Amblypygid, Nathan Bostelman
Honors Projects
Amblypygids are nocturnal arthropods which live in cluttered habitats and possess the ability to navigate home after displacements of up to ten meters. Homing amblypygids rely on olfactory and tactile information gathered by their antenniform legs to navigate successfully. Given that odor signals encountered in nature are complex and dynamic, navigation via olfaction presents unique challenges related to signal uncertainty. To understand how amblypygids perceive perceive complex odors and what they learn from them, individuals of the subtropical amblypygid P. marginemaculatus were trained to associate a blend of two odors with a shelter and tested on three treatments: the reinforced …
Exploring The Relationship Between Art And Environmental Education, Mackenzie Haynes
Exploring The Relationship Between Art And Environmental Education, Mackenzie Haynes
Honors Projects
To explore the relationship between art and environmental education, I created a lesson plan and then put into practice at Crim Elementary School in a 4th grade art class. The art project had to do with the environment, endangered animals and recyclable materials. I titled the project "Habitat Heroes" and students had to imagine that they were the only people left on Earth along with a few animals and lots of trash. They were tasked with selecting an endangered animal in Ohio from one of five different groups (mammals, birds, reptiles/amphibians, birds and fish) to create a habitat for. The …
Assessing Environmental Factors That Influence Cyanobacterial Blooms In Skinn Lake, Kloe Atwood
Assessing Environmental Factors That Influence Cyanobacterial Blooms In Skinn Lake, Kloe Atwood
Honors Projects
Global lakes are experiencing an increase in toxic algal blooms that can be damaging to the environment. These blooms are caused by cyanobacteria, specifically a species called Planktothrix. Skinn Lake, in Ohio, is a location of a cyanobacterial bloom that is mainly populated by Planktothrix rubescens. This lake was further examined to identify the major toxin-producing bacteria and identify environmental microbes surrounding the bloom. When the data was examined it was found that the microbiomes of the lake greatly differed between the winter (bloom) months and the summer (non-bloom) months. This difference can be viewed within the nutrient analysis from …
Developing An Electroporation Method For Transforming Streptomyces Nymphaeiformis, Heather Knott, Stephen Baron
Developing An Electroporation Method For Transforming Streptomyces Nymphaeiformis, Heather Knott, Stephen Baron
Honors Projects
Streptomyces species are notoriously difficult to transform. Streptomyces nymphaeiformis is no different, so a method of electroporation was used to attempt to transform the cells. Multiple growth stages were used in order to alter the degree of development of the cell wall. The procedure did not kill the cells, but the cells were not transformed. Due to the lack of transformation with S. nymphaeiformis, transformation was attempted on two other Streptomyces strains, S. lividans and S. coelicolor. Neither was successfully transformed to thiostrepton (tsr) resistance, nor did they grow on a plate lacking thiostrepton. One possibility for the …
The Role Of Elmo5 In Arabidopsis Thaliana Cell Adhesion, Isabel Kristina Ball
The Role Of Elmo5 In Arabidopsis Thaliana Cell Adhesion, Isabel Kristina Ball
Honors Projects
Plant cell growth and development relies on proper cellular adhesion. As the extracellular matrix serves as the area of connection between two cells, its synthesis and maintenance are essential for cellular adhesion. The middle lamella region, the layer of the extracellular matrix between two adjacent cell walls, is diffuse with the polysaccharide pectin due to its delivery by Golgi vesicles early during cell division. A Ruthenium Red screen for cellular adhesion mutants identified the family of 5 ELMO proteins that are critical for proper cellular adhesion. To further our understanding of plant cellular adhesion and pathways of pectin synthesis and …
Isolating Bacteriophage For Potential Treatment Of Chronic Multi-Drug Resistant Escherichia Coli Infections, Leila Oswalt
Isolating Bacteriophage For Potential Treatment Of Chronic Multi-Drug Resistant Escherichia Coli Infections, Leila Oswalt
Honors Projects
The misuse and overuse of antibiotics has led to the intense rise in antibiotic resistance. As society transitions into the post antibiotic era, there will be a great need for new therapeutic strategies to address multiple drug resistant bacterial infections. One such method, called bacteriophage therapy, allows for specific targeting of certain pathogenic bacteria through the use of viruses that attack bacteria; termed “bacteriophage” or simply “phage”. Urinary tract infections are among the most common pathological human infections that rely heavily on the use of antibiotics, the major cause of which is the bacterium Escherichia coli. During the Spring 2021-Spring …
Restoring Polyhyrdoxybutyrate (Phb) Depolymerase Expression In A Bald Mutant Of Streptomyces Sp. Sfb5a, Youmna Moawad
Restoring Polyhyrdoxybutyrate (Phb) Depolymerase Expression In A Bald Mutant Of Streptomyces Sp. Sfb5a, Youmna Moawad
Honors Projects
Polyhydroxybutyrate (PHB) is a biodegradable, plastic-like polymer produced by some bacteria and degraded by others. The filamentous bacterium Streptomyces sp. SFB5A degrades PHB for growth using an extracellular PHB depolymerase, encoded by the phaZ gene. A morphological mutant of this bacterium, bld4, cannot form aerial filaments and cannot produce PHB depolymerase, despite having the phaZ gene. The inability to synthesize PHB depolymerase may be due to a mutation in a gene encoding one of its transcriptional regulators. A gene (lrp) coding for a potential transcriptional regulator is located 2,700 base pairs upstream from phaZ. Our goal …
Water Color: Inspiring Conservation Of Freshwater Ecosystems By Painting With Algae, Kate Lochridge
Water Color: Inspiring Conservation Of Freshwater Ecosystems By Painting With Algae, Kate Lochridge
Honors Projects
“Water Color: Inspiring Conservation of Freshwater Systems by Painting With Algae” is a project that focuses on raising awareness of harmful algal blooms in Lake Erie through the creation of algae-based paint. Its goal is to provide a multidisciplinary outlet for understanding complex interactions between the causes, effects, and solutions of Harmful Algal Blooms (HABs). The novel part of this project is the creation of watercolor paint from algae cells. This paint was used to create algae-based artwork that facilitates an aesthetic interaction with the science of HABs when other informative materials- such as journal articles- can be confusing and …
An Insider's Guide To Cell Biology, Katie Ludwig
An Insider's Guide To Cell Biology, Katie Ludwig
Honors Projects
An Insider's Guide to Cell Biology is a comic book that follows Alanine the amoeba who tells the reader all about how the cell works.
The Scoop On Composting: A Comprehensive Literature Review On Composting With A Focus On Grand Valley State University, Alexandria Snabes
The Scoop On Composting: A Comprehensive Literature Review On Composting With A Focus On Grand Valley State University, Alexandria Snabes
Honors Projects
This comprehensive review discusses the main microbial processes, methods, efficiency strategies, benefits, and drawbacks related to composting. Specifically, anaerobic, aerobic, and intermediate, or cold composting, decomposition processes are defined and assessed. This leads into a discussion of some common methods of composting, both large- and small-scale, which utilize these microbial processes to result in differing advantages and disadvantages. The efficiency of these methods can be increased using strategies that monitor oxygen levels, moisture levels, temperate levels, and overall size. Some benefits of composting discussed include diverting waste from landfills, improving soil nutrition and quality long-term, and increasing plant growth and …
Open System Metabolism Of The Grand River From Headwaters To Mouth, Colin J. Assenmacher
Open System Metabolism Of The Grand River From Headwaters To Mouth, Colin J. Assenmacher
Honors Projects
The Grand River is the longest river in Michigan and has been greatly impacted by human activities, particularly logging in the mid-1800s, which when coupled with 20th-century urbanization and continued agricultural use, led to historically poor river health. Despite this, actions throughout the past 50 years by federal, state, and local citizen involvement, have resulted in increased river health and broader water quality monitoring within the watershed. During the summer of 2021, rapid bioassessments targeting benthic macroinvertebrates were conducted along the Grand River, with the primary goal of following up on prior state-led surveys conducted at different locations along the …
Alterations To The Brain Following Traumatic Brain Injury, Jacqueline Mader
Alterations To The Brain Following Traumatic Brain Injury, Jacqueline Mader
Honors Projects
Traumatic brain injuries (TBIs) have been labeled as a modern-day epidemic, increasing exponentially with the advancement of technology and society. Gaining a better understanding of the cognitive paths, including the chemical and electrical signals of the brain, neural correlates, and possible interventions for TBI patients allows for the best possible outcome for every patient, and allows for the further advancement of care. By revising and reassessing the ways in which TBIs are categorized and described the prognosis for recovery paints a more realistic view for each individual patient case. The symptoms and impairments that may occur post-injury can be monitored …
Shelter Dogs Need A Home: The Effect Of Enrichment And Human Contact On The Welfare And Adoptability Of Shelter Dogs, Hannah G. Clark
Shelter Dogs Need A Home: The Effect Of Enrichment And Human Contact On The Welfare And Adoptability Of Shelter Dogs, Hannah G. Clark
Honors Projects
It comes as no surprise that an animal shelter can be a stressful place for dogs. Shelter conditions, accompanied by multiple, novel stimuli, produce a stressful environment that cause hormonal and behavioral responses in dogs housed in shelters. Many of the stereotypical behaviors produced by the stress of living in a shelter, which tend to worsen as length of stay increases, are undesirable to potential adopters. However, many studies have shown that enrichment with a variety of toys, exercise, and human interaction can buffer the stress response in shelter dogs and improve their well-being. Implementing obedience training and temporary fostering …
Pectin And Alginate Extraction To Treat Liquid Cafo Manure, Clare Sunderman
Pectin And Alginate Extraction To Treat Liquid Cafo Manure, Clare Sunderman
Honors Projects
For this project, various extraction methods were used to extract pectin from Pastinaca Sativa and alginate from Macrocystis. These extractions were then dried and used in treating 250mL of manure along with a CaCl2 or FeCl3 coagulant. It was found that CaCl2 was not as effective as FeCl3 in coagulating manure. But the results obtained suggest that pectin and alginate obtained with a simpler extraction method is just as effective as the highly purified and refined pectin and alginate produced for the food industry, in the treatment of CAFO manure. The liquid portion of the …
Unsupervised And Supervised Learning For Rna-Protein Interactions And Annotations, Kateland Sipe
Unsupervised And Supervised Learning For Rna-Protein Interactions And Annotations, Kateland Sipe
Honors Projects
This project analyzed the base and amino acid interactions and annotations through the use of unsupervised and supervised learning techniques. For unsupervised learning, clustering found the data was not able to be distinguished into clear groups which matched the original annotations through kmeans clustering and hierarchical clustering. For supervised learning, the use of random forest, glmnet, and deep learning neural networks were successful in creating accurate predictions. However, machine learning likely will not be able to replace the original complex program, but could be used for possible simplification.
Too Little Ph: How Freshwater Acidification Impacts The Abundance Of Macrophytes Consumed By Rusty Crayfish, Lauren Tucker, Paul Moore Dr., Jay Jones Mr.
Too Little Ph: How Freshwater Acidification Impacts The Abundance Of Macrophytes Consumed By Rusty Crayfish, Lauren Tucker, Paul Moore Dr., Jay Jones Mr.
Honors Projects
Anthropogenic activities such as the burning of fossil fuels result in increased atmospheric carbon dioxide (CO2) concentration. High levels of atmospheric CO2 cause chemical shifts in the carbon cycle. Changes in the carbon cycle due to increased CO2 levels lead to ocean and freshwater acidification. Freshwater acidification is problematic for species that synthesize their own shells as well as species that use olfaction for decision-making. Rusty crayfish (Faxonius rusticus) were subject to simulated freshwater acidification and fed two types of macrophyte, Chara (Chara braunii) and Myriopyllum (Myriophyllum sibiricum). A series …
Induced Pluripotent Stem Cell Cardiomyocytes Provide An In Vitro Model Of The Myocardial Environment For Investigating Stem Cell Therapies, Jacob M. Gunn
Honors Projects
Ischemic heart disease remains a major cause of death and disability worldwide (Moran Andrew E. et al., 2014). While interventions for heart disease have come a long way, restoring functionality to damaged myocardium remains a challenge. Both mechanical and electrical repair of the host myocardium are essential to salvage the damaged tissue. This is especially difficult following a myocardial infarction (MI) as the infarct area is subject to quick and extensive cell death via necrosis then apoptosis (Prabhu & Frangogiannis, 2016). Stem cells have emerged as a candidate for potential replacement therapies. Adult stem cells (ASCs) are taken from bone …
The Role Of The Golgi Elmo Proteins In Cell Adhesion In Arabidopsis Thaliana, Wesley James Hudson
The Role Of The Golgi Elmo Proteins In Cell Adhesion In Arabidopsis Thaliana, Wesley James Hudson
Honors Projects
Proper growth and development of plant cells is dependent upon successful cell adhesion between cells, and this is mostly mediated by pectin in the plant cell wall. Previously, the Kohorn Laboratory identified a non-enzymatic Golgi protein named ELMO1 as it is required for cell adhesion, likely acting as a scaffold for cell wall polymer synthesis. Plants with mutant ELMO1 demonstrate a weak defective cellular adhesion phenotype as well as reduced mannose content in the cell wall. ELMO1 has homologous proteins in at least 29 different vascular plants. These homologues have 2 possible deletions in their amino acid sequence, but protein …