Biology Commons^™

Habituation To Auditory Stimuli By Captive African Elephants (Loxodonta Africana), Sarah Elizabeth Goodyear, Bruce A. Schulte

Biology Faculty Publications

Habituation is a major concern for the development of effective, long-term human-wildlife conflict mitigation and zoo enrichment programs. Elephants are cognitive species that exhibit many types of learning, such as associative, social, and insight learning. However, no study has examined the habituation process in elephants. Elephants possess a well-developed sensory system and may habituate to stimuli that could be used for enrichment and/or management. The aim of this study was to examine their habituation process in response to repeated presentations of two auditory stimuli: buzzing by a disturbed beehive and the sound created by banging on pots and pans, and …

Limited Role Of Functional Differentiation In Early Diversification Of Animals, Matthew L. Knope, N A. Heim, L O. Frishkoff, J L. Payne

Biology Faculty Publications

The origin of most animal phyla and classes during the Cambrian explosion has been hypothesized to represent an ‘early burst’ of evolutionary exploration of functional ecological possibilities. However, the ecological history of marine animals has yet to be fully quantified, preventing an assessment of the early-burst model for functional ecology. Here we use ecological assignments for 18,621 marine animal genera to assess the relative timing of functional differentiation versus taxonomic diversification from the Cambrian to the present day. We find that functional diversity increased more slowly than would be expected given the history of taxonomic diversity. Contrary to previous inferences …

An Integrative Approach To Phylogeography: Investigating The Effects Of Ancient Seaways, Climate, And Historical Geology On Multi-Locus Phylogeographic Boundaries Of The Arboreal Salamander (Aneides Lugubris), S B. Reilly, Ammon Corl, D B. Wake

Biology Faculty Publications

Background: Phylogeography is an important tool that can be used to reveal cryptic biodiversity and to better understand the processes that promote lineage diversification. We studied the phylogeographic history of the Arboreal Salamander (Aneides lugubris), a wide-ranging species endemic to the California floristic province. We used multi-locus data to reconstruct the evolutionary history of A. lugubris and to discover the geographic location of major genetic breaks within the species. We also used species distribution modeling and comparative phylogeography to better understand the environmental factors that have shaped the genetic history of A. lugubris.

Results: We found six major mitochondrial clades …

Revised Distribution For Otomops Martiensseni (Chiroptera: Molossidae) In Southern Africa, Rick A. Adams, Frank J. Bonaccorso, John R. Winkelmann

Biology Faculty Publications

We provide new data on the distributional range and abundance of the giant mastiff bat,Otomops martiensseni for which information on distribution and ecology are sorely needed. Because this species can forage at high altitudes, it is difficult to capture and most observations have been from caves and buildings. With the advent of new sonar gathering devices and analysis software, recording of echolocation calls can give unprecedented information on evasive bat species. Previous records from South Africa were restricted to the Durban area where several colonies in buildings were documented. No published records were available for Botswana. Our data expand …

Clues To Aquatic Beetle Research In Southeast Asia: A Multitude Of Ecological Niches, Microhabitats And Deduced Field Sampling Techniques, Hendrik Freitag

Biology Faculty Publications

The basic ecological classification of Southeast Asian beetle families that are associated with aquatic habitats is reviewed. The microhabitat preferences of the taxa are examined on family level with generic examples. Suitable collection methods for quantitative and qualitative sampling are suggested which take into account the different ecological adaptation patterns and microhabitat preferences.

Biodiversity Comparison Among Phylogenetic Diversity Metrics And Between Three North American Prairies, P. Roxanne (Steele) Kellar, Dakota Ahrendsen, Shelly K. Aust, Amanda R. Jones, J. Chris Pires

Biology Faculty Publications

Protection of Earth’s ecosystems requires identification of geographical areas of greatest biodiversity. Assessment of biodiversity begins with knowledge of the evolutionary histories of species in a geographic area. Multiple phylogenetic diversity (PD) metrics have been developed to describe biodiversity beyond species counts, but sufficient empirical studies, particularly at fine phylogenetic scales, have not been conducted to provide conservation planners with evidence for incorporating PD metrics into selection of priority regions. We review notable studies that are contributing to a growing database of empirical results, we report on the effect of using high-throughput sequencing to estimate the phylogenies used to calculate …

Detrital Stoichiometry As A Critical Nexus For The Effects Of Streamwater Nutrients On Leaf Litter Breakdown Rates, David W. P. Manning, Amy D. Rosemond, John S. Kominoski, Vladislav Gulis, Jonathan P. Benstead, John C. Maerz

Biology Faculty Publications

Nitrogen (N) and phosphorus (P) concentrations are elevated in many freshwater systems, stimulating breakdown rates of terrestrially derived plant litter; however, the relative importance of N and P in driving litter breakdown via microbial and detritivore processing are not fully understood. Here, we determined breakdown rates of two litter species, Acer rubrum (maple) and Rhododendron maximum (rhododendron), before (PRE) and during two years (YR1, YR2) of experimental N and P additions to five streams, and quantified the relative importance of hypothesized factors contributing to breakdown. Treatment streams received a gradient of P additions (low to high soluble reactive phosphorus [SRP]; …

Community Chairs As A Catalyst For Campus Collaboration In Stem, Neal Grandgenett, David Boocker, Hesham Ali, Angela M. Hodge, Brian Dorn, Christine E. Cutucache

Biology Faculty Publications

Strong collaborative partnerships are critical to the ongoing success of any urban or metropolitan university in its efforts to build the science, technology, engineering, and mathematics (STEM) career pathways so critical to our nation. At the University of Nebraska at Omaha, we have established a faculty leadership structure of "community chairs" that work across colleges to support campus priorities. This paper describes UNO’s STEM community chair model, including selected initiatives, impacts, and challenges to date.

Facing A Changing World: Thermal Physiology Of American Pikas (Ochotona Princeps), Hans W. Otto, James A. Wilson, Erik A. Beever

Biology Faculty Publications

American pikas (Ochotona princeps) are of concern with respect to warming montane temperatures; however, little information exists regarding their physiological ability to adapt to warming temperatures. Previous studies have shown that pikas have high metabolism and low thermal conductance, which allow survival during cold winters. It has been hypothesized that these characteristics may be detrimental, given the recent warming trends observed in montane ecosystems. We examined resting metabolic rate, surface activity, and den and ambient temperatures (Ta) of pikas in late summer (August 2011 and 2012) at 2 locations in the Rocky Mountains. Resting metabolic rate was calculated to be …

Low-To-Moderate Nitrogen And Phosphorus Concentrations Accelerate Microbially Driven Litter Breakdown Rates, John S. Kominoski, Amy D. Rosemond, Jonathan P. Benstead, Vladislav Gulis, John C. Maerz, David W. P. Manning

Biology Faculty Publications

Particulate organic matter (POM) processing is an important driver of aquatic ecosystem productivity that is sensitive to nutrient enrichment and drives ecosystem carbon (C) loss. Although studies of single concentrations of nitrogen (N) or phosphorus (P) have shown effects at relatively low concentrations, responses of litter breakdown rates along gradients of low‐to‐moderate N and P concentrations are needed to establish likely interdependent effects of dual N and P enrichment on baseline activity in stream ecosystems. We established 25 combinations of dissolved inorganic N (DIN; 55–545 μg/L) and soluble reactive P (SRP; 4–86 μg/L) concentrations with corresponding N:P molar ratios of …

Learning To Love Leftovers: Using By-Catch To Expand Our Knowledge In Entomology, John M. Stark, Ricardo A. Ramirez

Biology Faculty Publications

Each year, federal and state agencies, including universities, conduct field surveys for invasive species in an attempt to detect new introductions early in the invasion process. National surveys for invasive insects are administered and coordinated by the United States Department of Agriculture's Animal and Plant Health Inspection Service-Plant Protection and Quarantine (USDA-APHIS-PPQ) and the Forest Service through Farm Bill § 10007 ( www.aphis.usda.gov ), the Cooperative Agricultural Pest Survey (CAPS) (caps.ceris.purdue.edu), and Early Detection Rapid Response (EDRR) ( www.fs.fed.us/invasivespecies ) programs. Thousands of traps are placed annually and monitored usually every one to two weeks throughout the U.S., mostly during …

Introduction Effort, Climate Matching And Species Traits As Predictors Of Global Establishment Success In Non-Native Reptiles, Peter J. Mahoney, Karen H. Beard, Andrew M. Durso, Aimee G. Tallian, Arin Lexine Long, Ryan J. Kindermann, Nicole E. Nolan, Daniel Kinka, Harrison E. Mohn

Biology Faculty Publications

Non-native reptiles are often detrimental to native communities and ecosystems and can be extremely difficult to manage once established. Thus, there is considerable interest in predicting the likelihood of establishment of nonnative reptiles. We assessed three hypotheses describing possible factors contributing to the successful establishment of introduced reptiles in an effort to better identify potential invaders.

Altered Gene Expression In The Schistosome-Transmitting Snail Biomphalaria Glabrata Following Exposure To Niclosamide, The Active Ingredient In The Widely Used Molluscicide Bayluscide, Si-Ming Zhang, S K. Buddenborg, C M. Adema, John T. Sullivan, E S. Loker

Biology Faculty Publications

In view of the call by the World Health Organization (WHO) for elimination of schistosomiasis as a public health problem by 2025, use of molluscicides in snail control to supplement chemotherapy–based control efforts is likely to increase in the coming years. The mechanisms of action of niclosamide, the active ingredient in the most widely used molluscicides, remain largely unknown. A better understanding of its toxicology at the molecular level will both improve our knowledge of snail biology and may offer valuable insights into the development of better chemical control methods for snails. We used a recently developed Biomphalaria glabrata oligonucleotide …

The Next Generation Of Action Ecology: Novel Approaches Towards Global Ecological Research, R. L. White, A. E. Sutton, R. Salguero-Gómez, T. C. Bray, H. Campbell, E. Cieraad, N. Geekiyanage, L. Gherardi, A. C. Hughes, P. Søgaard Jørgensen, T. Poisot, Lucía Desoto, Naupaka B. Zimmerman

Biology Faculty Publications

Advances in the acquisition and dissemination of knowledge over the last decade have dramatically reshaped the way that ecological research is conducted. The advent of large, technology-based resources such as iNaturalist, Genbank, or the Global Biodiversity Information Facility (GBIF) allow ecologists to work at spatio-temporal scales previously unimaginable. This has generated a new approach in ecological research: one that relies on large datasets and rapid synthesis for theory testing and development, and findings that provide specific recommendations to policymakers and managers. This new approach has been termed action ecology, and here we aim to expand on earlier definitions to …

Ecology Postdocs In Academia: Primary Concerns And Possible Solutions, A. K. Shaw, D. E. Stanton, S. R. Supp, A. Budden, S. Eby, P. L. Reynolds, R. Salguero-Gómez, D. R. Scholes, Naupaka B. Zimmerman

Biology Faculty Publications

No abstract provided.

Connecting People And Ideas From Around The World: Global Innovation Platforms For Next-Generation Ecology And Beyond, P. Søgaard Jørgensen, F. Barraquand, V. Bonhomme, T. J. Curran, E. Cieraad, T. G. Ezard, L. Gherardi, R. A. Hayes, T. Poisot, R. Salguero-Gómez, Lucía Desoto, B. Swartz, J. M. Talbot, B. Wee, Naupaka B. Zimmerman

Biology Faculty Publications

We present a case for using Global Community Innovation Platforms (GCIPs), an approach to improve innovation and knowledge exchange in international scientific communities through a common and open online infrastructure. We highlight the value of GCIPs by focusing on recent efforts targeting the ecological sciences, where GCIPs are of high relevance given the urgent need for interdisciplinary, geographical, and cross-sector collaboration to cope with growing challenges to the environment as well as the scientific community itself. Amidst the emergence of new international institutions, organizations, and meetings, GCIPs provide a stable international infrastructure for rapid and long-term coordination that can be …

The Tao Of Open Science For Ecology, S. E. Hampton, S. S. Anderson, S. C. Bagby, C. Gries, X. Han, E. M. Hart, M. B. Jones, W. C. Lenhardt, A. Macdonald, W. K. Michener, J. Mudge, A. Pourmokhtarian, M. P. Schildhauer, K. H. Woo, Naupaka B. Zimmerman

Biology Faculty Publications

The field of ecology is poised to take advantage of emerging technologies that facilitate the gathering, analyzing, and sharing of data, methods, and results. The concept of transparency at all stages of the research process, coupled with free and open access to data, code, and papers, constitutes “open science.” Despite the many benefits of an open approach to science, a number of barriers to entry exist that may prevent researchers from embracing openness in their own work. Here we describe several key shifts in mindset that underpin the transition to more open science. These shifts in mindset include thinking about …

Human Cytomegalovirus Interleukin-10 Promotes Proliferation And Migration Of Mcf-7 Breast Cancer Cells, Robin K. Bishop, Cendy A. Valle Oseguera, Juliet Spencer

Biology Faculty Publications

Breast cancer is the most common malignancy affecting women worldwide. While a small fraction of breast cancers have a hereditary component, environmental and behavioral factors also impact the development of cancer. Human cytomegalovirus (HCMV) is a member of the Herpesviridae family that is widespread in the general population and has been linked to several forms of cancer. While HCMV DNA has been found in some breast cancer tissue specimens, we wanted to investigate whether a secreted viral cytokine might have an effect on cancerous or even pre-cancerous cells. HCMV encodes an ortholog of the human cellular cytokine interleukin-10 (IL-10). The …

Exercise At Depth Alters Bradycardia And Incidence Of Cardiac Anomalies In Deep-Diving Marine Mammals, T. M. Williams, L. A. Fuiman, T. Kendall, P. Berry, B. Richter, S. R. Noren, Nicole Thometz, M. J. Shattock, E. Farrell, A. M. Stamper, R. W. Davis

Biology Faculty Publications

Unlike their terrestrial ancestors, marine mammals routinely confront extreme physiological and physical challenges while breath-holding and pursuing prey at depth. To determine how cetaceans and pinnipeds accomplish deep-sea chases, we deployed animal-borne instruments that recorded high-resolution electrocardiograms, behaviour and flipper accelerations of bottlenose dolphins (Tursiops truncatus) and Weddell seals (Leptonychotes weddellii) diving from the surface to 4200 m. Here we report that both exercise and depth alter the bradycardia associated with the dive response, with the greatest impacts at depths inducing lung collapse. Unexpectedly, cardiac arrhythmias occurred in 473% of deep, aerobic dives, which we attribute to the interplay between …

A Conservative Isoleucine To Leucine Mutation Causes Major Rearrangements And Cold Sensitivity In Klentaq1 Dna Polymerase, Eugene Y. Wu, Amanda R. Walsh, Emma C. Materne, Emily P. Hiltner, Bryan Zielinski, Bill R. Miller Iii, Lily Mawby, Carol A. Parish, Wayne M. Barnes, Milko B. Kermekchiev

Biology Faculty Publications

Assembly of polymerase chain reactions at room temperature can sometimes lead to low yields or unintentional products due to mispriming. Mutation of isoleucine 707 to leucine in DNA polymerase I from Thermus aquaticus substantially decreases its activity at room temperature without compromising its ability to amplify DNA. To understand why a conservative change to the enzyme over 20 Å from the active site can have a large impact on its activity at low temperature, we solved the X-ray crystal structure of the large (5′-to-3′ exonuclease-deleted) fragment of Taq DNA polymerase containing the cold-sensitive mutation in the ternary (E–DNA–ddNTP) and binary …

Not Just A Theory--The Utility Of Mathematical Models In Evolutionary Biology, Maria R. Servedio, Yaniv Brandvain, Sumit Dhole, Courtney L. Fitzpatrick, Emma E. Goldberg, Caitlin A. Stern, Jeremy Van Cleve, D. Justin Yeh

Biology Faculty Publications

Progress in science often begins with verbal hypotheses meant to explain why certain biological phenomena exist. An important purpose of mathematical models in evolutionary research, as in many other fields, is to act as “proof-of-concept” tests of the logic in verbal explanations, paralleling the way in which empirical data are used to test hypotheses. Because not all subfields of biology use mathematics for this purpose, misunderstandings of the function of proof-of-concept modeling are common. In the hope of facilitating communication, we discuss the role of proof-of-concept modeling in evolutionary biology.

Design, Assessment, And In Vivo Evaluation Of A Computational Model Illustrating The Role Of Cav1 In Cd4+ T-Lymphocytes, Brittany D. Conroy, Tyler A. Herek, Timothy D. Shew, Matthew Latner, Joshua J. Larson, Laura Allen, Paul H. Davis, Tomáš Helikar, Christine E. Cutucache

Biology Faculty Publications

Caveolin-1 (CAV1) is a vital scaffold protein heterogeneously expressed in both healthy and malignant tissue. We focus on the role of CAV1 when overexpressed in T-cell leukemia. Previously, we have shown that CAV1 is involved in cell-to-cell communication, cellular proliferation, and immune synapse formation; however, the molecular mechanisms have not been elucidated. We hypothesize that the role of CAV1 in immune synapse formation contributes to immune regulation during leukemic progression, thereby warranting studies of the role of CAV1 in CD4⁺ T-cells in relation to antigen-presenting cells. To address this need, we developed a computational model of a CD4^{+ …}

A Fish Farmer’S Role In Sustainable Aquaculture: An Overview Of Philippine Aquaculture, Janice A. Ragaza, Jonni Fay C. Teves

Biology Faculty Publications

The expansion of Philippine aquaculture is essential to addressing poverty and food insecurity in the midst of a seemingly irreversible decline in national capture fisheries. Concomitant with its rise, however, are compounding environmental problems caused by climate change, lackluster governance and irresponsible farming practices. It is equally important to ensure aquaculture sustainability so that fish demand from a rapidly growing population is continually met and that fish farmers’ socioeconomic well-being is secured. As such, programs have been developed that aim to enjoin the government and private sectors with fishing communities to realize this goal.

A Novel Method For Simulating Insulin Mediated Glut4 Translocation, Andrew Jezewski, Joshua Larson, Beata Wysocki, Paul H. Davis, Tadeusz Wysocki

Biology Faculty Publications

Glucose transport in humans is a vital process which is tightly regulated by the endocrine system. Specifically, the insulin hormone triggers a cascade of intracellular signals in target cells mediating the uptake of glucose. Insulin signaling triggers cellular relocalization of the glucose transporter protein GLUT4 to the cell surface, which is primarily responsible for regulated glucose import. Pathology associated with the disruption of this pathway can lead to metabolic disorders, such as type II diabetes mellitus, characterized by the failure of cells to appropriately uptake glucose from the blood. We describe a novel simulation tool of the insulin intracellular response, …

Stem Nematode Counteracts Plant Resistance Of Aphids In Alfalfa, Medicago Sativa, Ricardo A. Ramirez, John M. Stark

Biology Faculty Publications

Plants are exploited by a diverse community of insect herbivores and phytopathogens that interact indirectly through plant-mediated interactions. Generally, plants are thought to respond to insects and pathogens through different defensive signaling pathways. As plants are selected for resistance to one phytophagous organism type (insect vs. pathogen) in managed systems, it is not clear how this selection may affect community interactions. This study examined the effect of nematode-resistant varieties on aphid (Acyrthosiphon pisum) suppression, and then determined how infection by the stem nematode, Ditylenchus dipsaci, mediated ecological effects on aphids and on plant defense proteins. Four alfalfa (Medicago sativa) varieties …

Seed Dormancy, Seedling Establishment And Dynamics Of The Soil Seed Bank Of Stipa Bungeana (Poaceae) On The Loess Plateau Of Northwestern China, Xiao Wen Hu, Yan Pei Wu, Xing Yu Ding, Rui Zhang, Yan Rong Wang, Jerry M. Baskin, Carol C. Baskin

Biology Faculty Publications

Studying seed dormancy and its consequent effect can provide important information for vegetation restoration and management. The present study investigated seed dormancy, seedling emergence and seed survival in the soil seed bank of Stipa bungeana, a grass species used in restoration of degraded land on the Loess Plateau in northwest China. Dormancy of fresh seeds was determined by incubation of seeds over a range of temperatures in both light and dark. Seed germination was evaluated after mechanical removal of palea and lemma (hulls), chemical scarification and dry storage. Fresh and one-year-stored seeds were sown in the field, and seedling …

Müllerian Mimicry As A Result Of Codivergence Between Velvet Ants And Spider Wasps, Juanita Rodriguez, James P. Pitts, Carol D. Von Dohlen, Joseph S. Wilson

Biology Faculty Publications

Recent studies have delineated a large Nearctic Müllerian mimicry complex in Dasymutilla velvet ants. Psorthaspis spider wasps live in areas where this mimicry complex is found and are phenotypically similar to Dasymutilla. We tested the idea that Psorthaspis spider wasps are participating in the Dasymutilla mimicry complex and that they codiverged with Dasymutilla. We performed morphometric analyses and human perception tests, and tabulated distributional records to determine the fit of Psorthaspis to the Dasymutilla mimicry complex. We inferred a dated phylogeny using nuclear molecular markers (28S, elongation factor 1-alpha, long-wavelength rhodopsin and wingless) for Psorthaspis species and compared it to …

Phylogenetic Analysis Of Algal Symbionts Associated With Four North American Amphibian Egg Masses, Eunsoo Kim, Yuan Lin, Ryan R. Kerney, Lili Blumenberg, Cory Bishop

Biology Faculty Publications

Egg masses of the yellow-spotted salamander Ambystoma maculatum form an association with the green alga “Oophila amblystomatis” (Lambert ex Wille), which, in addition to growing within individual egg capsules, has recently been reported to invade embryonic tissues and cells. The binomial O. amblystomatis refers to the algae that occur in A. maculatum egg capsules, but it is unknown whether this population of symbionts constitutes one or several different algal taxa. Moreover, it is unknown whether egg masses across the geographic range of A. maculatum, or other amphibians, associate with one or multiple algal taxa. To address these …

Hydrolyzed Tuna Meat By-Product Supplement For Juvenile Red Sea Bream, Pagrus Major, And Its Effect On Growth, Enzyme Activity, Plasma Parameters, And Apparent Nutrient Digestibility, Janice A. Ragaza, Roger Edward P. Mamauag, Shunsuke Koshio, Manabu Ishikawa, Saichiro Yokoyama

Biology Faculty Publications

A growth experiment was conducted on juvenile red sea bream, Pagrus major to investigate the effect of the inclusion in fish diets, of tuna meat by-product hydrolysate which was processed through enzymatic hydrolysis using a commercially available enzyme, derived from Bacillus subtilis. Six experimental diets were formulated in the experiment. Three diets contained 50, 150 and 250 g/kg of TPM-H (tuna meat by-product hydrolysate), and two diets with the unprocessed TPM (tuna meat by-product) at an inclusion level of 50 and 250 g/kg. A control diet was formulated without any addition of the test ingredients. Treatment diets were fed ad …

Intercellular Cooperation And Competition In Brain Cancers: Lessons From Drosophila And Human Studies, Indrayani Waghmare, Austin Roebke, Mutsuko Minata, Madhuri Kango-Singh, Ichiro Nakano

Biology Faculty Publications

Glioblastoma (GBM) is a primary brain cancer with an extremely poor prognosis. GBM tumors contain heterogeneous cellular components, including a small subpopulation of tumor cells termed glioma stem cells (GSCs). GSCs are characterized as chemotherapy- and radiotherapy-resistant cells with prominent tumorigenic ability. Studies in Drosophila cancer models demonstrated that interclonal cooperation and signaling from apoptotic clones provokes aggressive growth of neighboring tumorigenic clones, via compensatory proliferation or apoptosis induced proliferation. Mechanistically, these aggressive tumors depend on activation of Jun-N-terminal kinase (upstream of c-JUN), and Drosophila Wnt (Wg) in the apoptotic clones. Consistent with these nonmammalian studies, data from several mammalian …