Biology Commons^™

Capn5 Expression In The Healthy And Regenerating Zebrafish Retina, Cagney E. Coomer, Ann C. Morris

Biology Faculty Publications

PURPOSE. Autosomal dominant neovascular inflammatory vitreoretinopathy (ADNIV) is a devastating inherited autoimmune disease of the eye that displays features commonly seen in other eye diseases, such as retinitis pigmentosa and diabetic retinopathy. ADNIV is caused by a gain-of-function mutation in Calpain-5 (CAPN5), a calcium-dependent cysteine protease. Very little is known about the normal function of CAPN5 in the adult retina, and there are conflicting results regarding its role during mammalian embryonic development. The zebrafish (Danio rerio) is an excellent animal model for studying vertebrate development and tissue regeneration, and represents a novel model to explore the …

Remotely Sensed Canopy Nitrogen Correlates With Nitrous Oxide Emissions In A Lowland Tropical Rainforest, Fiona M. Soper, Benjamin W. Sullivan, Megan K. Nasto, Brooke B. Osborne, David Bru, Christopher S. Balzotti, Phillip G. Taylor, Gregory P. Asner, Alan R. Townsend, Laurent Philippot, Stephen Porder, Cory C. Cleveland

Biology Faculty Publications

Tropical forests exhibit significant heterogeneity in plant functional and chemical traits that may contribute to spatial patterns of key soil biogeochemical processes, such as carbon storage and greenhouse gas emissions. Although tropical forests are the largest ecosystem source of nitrous oxide (N2O), drivers of spatial patterns within forests are poorly resolved. Here, we show that local variation in canopy foliar N, mapped by remote‐sensing image spectroscopy, correlates with patterns of soil N2O emission from a lowland tropical rainforest. We identified ten 0.25 ha plots (assemblages of 40–70 individual trees) in which average remotely‐sensed canopy N fell above or below the …

Optical Fluorescent Spider Silk Electrospun Nanofibers With Embedded Cerium Oxide Nanoparticles, Ishac Kandas, Nader Shehata, Ibrahim Hassounah, Patrik Sobolciak, Igor Krupa, Randolph V. Lewis

Biology Faculty Publications

The work demonstrates an electrospun nanocomposite of recombinant spider silk protein (rSSp) nanofibers with embedded cerium oxide (ceria) nanoparticles. RSSP (MaSp1) has been produced, extracted from goat milk, and fabricated into nanofibers using an electrospinning process. The resulting electrospun nanofibers have a mean diameter of ∼50  nm. Furthermore, ceria nanoparticles of mean diameterions, associated with formed oxygen vacancies. The formed nanocomposite shows promising mechanical properties such as the Young’s modulus, elasticity (or elongation at break), and toughness. In addition, the electrospun mat becomes fluorescent with 520-nm emission upon exposure to UV light, due to excitation of the optically active ceria …

Investigating The Viral Ecology Of Global Bee Communities With High-Throughput Metagenomics, David A. Galbraith, Zachary L. Fuller, Allyson M. Ray, Axel Brockmann, Maryann Frazier, Mary W. Gikungu, J. Francisco Iturralde Martinez, Karen M. Kapheim, Jeffrey T. Kerby, Sarah D. Kocher, Oleksiy Losyev, Elliud Muli, Harland M. Patch, Cristina Rosa, Joyce M. Sakamoto, Scott Stanley, Anthony D. Vaudo, Christina M. Grozinger

Biology Faculty Publications

Bee viral ecology is a fascinating emerging area of research: viruses exert a range of effects on their hosts, exacerbate the impacts of other environmental stressors, and, importantly, are readily shared across multiple bee species in a community. However, our understanding of bee viral communities is limited, as it is primarily derived from studies of North American and European Apis mellifera populations. Here, we examined viruses in populations of A. mellifera and 11 other bee species from 9 countries, across 5 continents and Oceania. We developed a novel pipeline to rapidly, inexpensively, and robustly screen for bee viruses. This pipeline …

Electrospun Pva Polymer Embedded With Ceria Nanoparticles As Silicon Solar Cells Rear Surface Coaters For Efficiency Improvement, Effat Samir, Mohamed Salah, Ali Hajjiah, Nader Shehata, Marwa Fathy, Aya Hamed

Biology Faculty Publications

This paper introduces electrospun nanofibers embedded with ceria nanoparticles as silicon solar cells coaters, showing their influence on the solar cells efficiency. Ceria nanoparticles can be synthesized to have formed oxygen vacancies (O-vacancies), which are associated with converting cerium ions from the Ce4+ state ions to the Ce3+ ones. These O-vacancies follow the rule of improving silicon solar cellconductivity through the hopping mechanism. Besides, under violet excitation, the reduced trivalent cerium Ce3+ ions are directly responsible for down-converting the un-absorbed violet or ultra-violet (UV) wavelengths to a resulted green fluorescence emission at ~520 nm. These are absorbed through the silicon …

Partnering With A Pest: Genomes Of Hemlock Woolly Adelgid Symbionts Reveal Atypical Nutritional Provisioning Patterns In Dual-Obligate Bacteria, Kathryn M. Weglarz, Nathan P. Havill, Gaelen R. Burke, Carol D. Von Dohlen

Biology Faculty Publications

Nutritional bacterial symbionts enhance the diets of sap-feeding insects with amino acids and vitamins missing from their diets. In many lineages, an ancestral senior symbiont is joined by a younger junior symbiont. To date, an emergent pattern is that senior symbionts supply a majority of amino acids, and junior symbionts supply a minority. Similar to other hemipterans, adelgids harbor obligate symbionts, but have higher diversity of bacterial associates, suggesting a history of symbiont turnover. The metabolic roles of dual symbionts in adelgids and their contributions to the consortium are largely unexplored. Here, we investigate the symbionts of Adelges tsugae, …

Sensitive High-Frequency Hearing In Earless And Partially Eared Harlequin Frogs (Atelopus), Molly C. Womack, Jakob Christensen-Dalsgaard, Luis A. Coloma, Kim L. Hoke

Biology Faculty Publications

Harlequin frogs, genus Atelopus, communicate at high frequencies despite most species lacking a complete tympanic middle ear that facilitates high-frequency hearing in most anurans and other tetrapods. Here, we tested whether Atelopus are better at sensing high-frequency acoustic sound compared with other eared and earless species in the Bufonidae family, determined whether middle ear variation within Atelopus affects hearing sensitivity and tested potential hearing mechanisms in Atelopus. We determined that at high frequencies (2000‚Äì4000‚ÄÖHz), Atelopus are 10‚Äì34‚ÄÖdB more sensitive than other earless bufonids but are relatively insensitive to mid-range frequencies (900‚Äì1500‚ÄÖHz) compared with eared bufonids. Hearing among Atelopus species is …

Lanthanide-Doped Ceria Nanoparticles As Backside Coaters To Improve Silicon Solar Cell Efficiency, Ali Hajjiah, Effat Samir, Nader Shehata, Mohamed Salah

Biology Faculty Publications

This paper introduces lanthanide-doped ceria nanoparticles as silicon solar cell back-side coaters, showing their influence on the solar cell efficiency. Ceria nanoparticles can be synthesized to have formed oxygen vacancies (O-vacancies), which are associated with converting cerium ions from the Ce⁴⁺ state ions to the Ce³⁺ ones. These O-vacancies follow the rule of improving silicon solar cell conductivity through a hopping mechanism. Besides, under near-ultra violet (near-UV) excitation, the reduced trivalent cerium Ce³⁺ ions are directly responsible for down converting the un-absorbed UV wavelengths to a resultant green photo-luminescence emission at ~520 nm, which is absorbed through …

Algae Living In Salamanders, Friend Or Foe?, John Burns, Ryan R. Kerney

Biology Faculty Publications

Roughly speaking, our bodies use energy from the sun, but we can't use sunlight directly. Instead, plants and algae collect sunlight and store it as chemical energy through the process of photosynthesis. We can access that fuel directly when we eat plants, or indirectly when we eat other animals that eat plants.

However, in some invertebrate animals (those without a backbone) the relationships to algae are more intimate. Tiny single-celled algal "symbionts" can actually live inside the cells of living corals and small animals like hydra that live in water. The algae live in a safe environment inside animal …

The Indestructible Insect: Velvet Ants From Across The United States Avoid Predation By Representatives From All Major Tetrapod Clades, Brian G. Gall, Kari L. Spivey, Trevor L. Chapman, Robert J. Delph, Edmund D. Brodie Jr., Joseph S. Wilson

Biology Faculty Publications

Velvet ants are a group of parasitic wasps that are well known for a suite of defensive adaptations including bright coloration and a formidable sting. While these adaptations are presumed to function in antipredator defense, observations between potential predators and this group are lacking. We conducted a series of experiments to determine the risk of velvet ants to a host of potential predators including amphibians, reptiles, birds, and small mammals. Velvet ants from across the United States were tested with predator’s representative of the velvet ants native range. All interactions between lizards, free-ranging birds, and a mole resulted in the …

Target Sequence Capture Of Nuclear-Encoded Genes For Phylogenetic Analysis In Ferns, Paul G. Wolf, Tanner A. Robison, Matthew G. Johnson, Michael A. Sundue, Weston L. Testo, Carl J. Rothfels

Biology Faculty Publications

Premise of the Study

Until recently, most phylogenetic studies of ferns were based on chloroplast genes. Evolutionary inferences based on these data can be incomplete because the characters are from a single linkage group and are uniparentally inherited. These limitations are particularly acute in studies of hybridization, which is prevalent in ferns; fern hybrids are common and ferns are able to hybridize across highly diverged lineages, up to 60 million years since divergence in one documented case. However, it not yet clear what effect such hybridization has on fern evolution, in part due to a paucity of available biparentally inherited …

Admixture, Evolution, And Variation In Reproductive Isolation In The Boechera Puberula Clade, Martin P. Schilling, Zachariah Gompert, Fay-Wei Li, Michael D. Windham, Paul G. Wolf

Biology Faculty Publications

Background

Hybridization is very common in plants, and the incorporation of new alleles into existing lineages (i.e. admixture) can blur species boundaries. However, admixture also has the potential to increase standing genetic variation. With new sequencing methods, we can now study admixture and reproductive isolation at a much finer scale than in the past. The genus Boechera is an extraordinary example of admixture, with over 400 hybrid derivates of varying ploidy levels. Yet, few studies have assessed admixture in this genus on a genomic scale.

Results

In this study, we used Genotyping-by-Sequencing (GBS) to clarify the evolution of the Boechera …

De Novo Assembly Of The Burying Beetle Nicrophorus Orbicollis (Coleoptera: Silphidae) Transcriptome Across Developmental Stages With Identification Of Key Immune Transcripts, Harim Won, Thomas T. Schulze, Emalie J. Clement, Gabrielle F. Watson, Sean M. Watson, Rosalie C. Warner, Elizabeth A. M. Ramler, Elias J. Witte, Mark A. Schoenbeck, Claudia M. Rauter, Paul H. Davis

Biology Faculty Publications

Burying beetles (Nicrophorus spp.) are among the relatively few insects that provide parental care while not belonging to the eusocial insects such as ants or bees. This behavior incurs energy costs as evidenced by immune deficits and shorter life-spans in reproducing beetles. In the absence of an assembled transcriptome, relatively little is known concerning the molecular biology of these beetles. This work details the assembly and analysis of the Nicrophorus orbicollis transcriptome at multiple developmental stages. RNA-Seq reads were obtained by next-generation sequencing and the transcriptome was assembled using the Trinity assembler. Validation of the assembly was performed by functional …

Routes Of Pesticide Exposure In Solitary, Cavity-Nesting Bees, Andi M. Kopit, Theresa L. Pitts-Singer

Biology Faculty Publications

Declines of pollinator health and their populations continue to be commercial and ecological concerns. Agricultural practices, such as the use of agrochemicals, are among factors attributed to honey bee (Apis mellifera L. (Hymenoptera: Apidae)) population losses and are also known to have negative effects on populations of managed non-Apis pollinators. Although pesticide registration routinely requires evaluation of impacts on honey bees, studies of this social species may not reveal important pesticide exposure routes where managed, solitary bees are commonly used. Studies of solitary bees offer additional bee models that are practical from the aspect of availability, known rearing …

Differential Susceptibilities Of Anopheles Albimanus And Anopheles Stephensi Mosquitoes To Ivermectin, Staci M. Dreyer, Kelsey J. Morin, Jefferson A. Vaughan

Biology Faculty Publications

Background

Vector control is a crucial element of anti-malaria campaigns and works best when there is a thorough knowledge of the biology and behaviour of the Anopheles vector species responsible for transmitting malaria within a given locale. With the push to eradicate malaria stronger than ever, there is a growing need to develop and deploy control strategies that exploit the behavioural attributes of local vector species. This is especially true in regions where the vectors are exophagic (i.e., prefer to bite outdoors), exophilic (i.e., prefer to remain outdoors), and zoophagic (i.e., as likely to feed on non-humans as humans). One …

The Natural Variance Of The Arabidopsis Floral Secondary Metabolome, Takayuki Tohge, Monica Borghi, Alisdair R. Fernie

Biology Faculty Publications

Application of mass spectrometry-based metabolomics enables the detection of genotype-related natural variance in metabolism. Differences in secondary metabolite composition of flowers of 64 Arabidopsis thaliana (Arabidopsis) natural accessions, representing a considerable portion of the natural variation in this species are presented. The raw metabolomic data of the accessions and reference extracts derived from flavonoid knockout mutants have been deposited in the MetaboLights database. Additionally, summary tables of floral secondary metabolite data are presented in this article to enable efficient re-use of the dataset either in metabolomics cross-study comparisons or correlation-based integrative analysis of other metabolomic and phenotypic features such as …

The Evolutionary History Of Nebraska Deer Mice: Local Adaptation In The Face Of Strong Gene Flow, Susanne P Pfeifer, Stefan Laurent, Vitor C. Sousa, Catherine R. Linnen, Matthieu Foll, Laurent Excoffier, Hopi E. Hoekstra, Jeffrey D. Jensen

Biology Faculty Publications

The interplay of gene flow, genetic drift, and local selective pressure is a dynamic process that has been well studied from a theoretical perspective over the last century. Wright and Haldane laid the foundation for expectations under an island-continent model, demonstrating that an island-specific beneficial allele may be maintained locally if the selection coefficient is larger than the rate of migration of the ancestral allele from the continent. Subsequent extensions of this model have provided considerably more insight. Yet, connecting theoretical results with empirical data has proven challenging, owing to a lack of information on the relationship between genotype, phenotype, …

Characterization Of A Morphogenetic Furrow Specific Gal4 Driver In The Developing Drosophila Eye, Ankita Sarkar, Neha Gogia, Kevin Farley, Lydia C. Payton, Amit Singh

Biology Faculty Publications

The ability to express a gene of interest in a spatio-temporal manner using Gal4-UAS system has allowed the use of Drosophila model to study various biological phenomenon. During Drosophila eye development, a synchronous wave of differentiation called Morphogenetic furrow (MF) initiates at the posterior margin resulting in differentiation of retinal neurons. This synchronous differentiation is also observed in the differentiating retina of vertebrates. Since MF is highly dynamic, it can serve as an excellent model to study patterning and differentiation. However, there are not any Gal4 drivers available to observe the gain- of- function or loss- of- function of a …

A Biogeographic Perspective On The Evolution Of Fire Syndromes In Pine Trees (Pinus: Pinaceae), Kevin J. Badik, Joshua P. Jahner, Joseph S. Wilson

Biology Faculty Publications

Our goals were to explore the relationship between biogeography and the evolution of fire-adaptive syndromes in the genus Pinus. We used a previously published time-calibrated phylogeny and conducted ancestral trait reconstruction to estimate the likely timing of diversification in Pinus, and to determine when fire-adaptive syndromes evolved in the lineage. To explore trait conservation among fire syndromes and to investigate historical biogeography, we constructed ancestral state reconstructions using the program RASP and estimated the degree of conservatism for fire-adapted traits in the program BaTS. Our reconstructions suggest that the Bering land bridge, which connected North America and Asia, probably played …

Early Limb Patterning In The Direct‐Developing Salamander Plethodon Cinereus Revealed By Sox9 And Col2a1, Ryan R. Kerney, James Hanken, David C. Blackburn

Biology Faculty Publications

Direct‐developing amphibians form limbs during early embryonic stages, as opposed to the later, often postembryonic limb formation of metamorphosing species. Limb patterning is dramatically altered in direct‐developing frogs, but little attention has been given to direct‐developing salamanders. We use expression patterns of two genes, sox9and col2a1, to assess skeletal patterning during embryonic limb development in the direct‐developing salamander Plethodon cinereus. Limb patterning in P. cinereus partially resembles that described in other urodele species, with early formation of digit II and a generally anterior‐to‐posterior formation of preaxial digits. Unlike other salamanders described to date, differentiation of preaxial zeugopodial …

Morphogenetic Defects Underlie Superior Coloboma, A Newly Identified Closure Disorder Of The Dorsal Eye, Jennifer C. Hocking, Jakub K. Famulski, Kevin H. Yoon, Sonya A. Widen, Cassidy S. Bernstein, Sophie Koch, Omri Weiss, Forge Canada Consortium, Canada, Seema Agarwala, Adi Inbal, Ordan J. Lehmann, Andrew J. Waskiewicz

Biology Faculty Publications

The eye primordium arises as a lateral outgrowth of the forebrain, with a transient fissure on the inferior side of the optic cup providing an entry point for developing blood vessels. Incomplete closure of the inferior ocular fissure results in coloboma, a disease characterized by gaps in the inferior eye and recognized as a significant cause of pediatric blindness. Here, we identify eight patients with defects in tissues of the superior eye, a congenital disorder that we term superior coloboma. The embryonic origin of superior coloboma could not be explained by conventional models of eye development, leading us to …

Characterization Of Pax3 And Sox10 Transgenic Xenopus Laevis Embryos As Tools To Study Neural Crest Development, Mansour Alkobtawi, Heather Ray, Elias H. Barriga, Mauricio Moreno, Ryan R. Kerney, Anne-Helene Monsoro-Burq, Jean-Pierre Saint-Jeannet, Roberto Mayor

Biology Faculty Publications

The neural crest is a multipotent population of cells that originates a variety of cell types. Many animal models are used to study neural crest induction, migration and differentiation, with amphibians and birds being the most widely used systems. A major technological advance to study neural crest development in mouse, chick and zebrafish has been the generation of transgenic animals in which neural crest specific enhancers/promoters drive the expression of either fluorescent proteins for use as lineage tracers, or modified genes for use in functional studies. Unfortunately, no such transgenic animals currently exist for the amphibians Xenopus laevis and tropicalis, …

Monitoring Of Dung Beetle (Scarabaeidae And Geotrupidae) Activity Along Maryland's Coastal Plain, Patrick Simons, Michael Molina, Mallory A. Hagadorn, Dana L. Price

Biology Faculty Publications

Our understanding of how human activities impact insect communities is limited. Dung beetles, well known for the ecosystem services they provide, are faced with many conservation threats, particularly from deforestation and agriculture. Here we used 200-m transects and human-dung—baited pitfall traps to examine dung beetle populations in 7 forests of Maryland's Coastal Plain. We set traps once a month, from May 2014 to April 2015, to determine species presence, abundance, range, and seasonality. We collected 6463 individuals representing 22 species; Janes Island State Park (JISP) had the highest abundance (2705 individuals) and Martinak State Park (MSP) had the highest species …

Skin Gland Concentrations Adapted To Different Evolutionary Pressures In The Head And Posterior Regions Of The Caecilian Siphonops Annulatus, Carlos Jared, Pedro Luiz Mailho-Fontana, Rafael Marques-Porto, Juliana Mozer Sciani, Daniel Carvalho Pimenta, Edmund D. Brodie Jr., Marta Maria Antoniazzi

Biology Faculty Publications

Amphibian skin is rich in mucous glands and poison glands, secreting substances important for gas exchange and playing a fundamental role in chemical defense against predators and microorganisms. In the caecilian Siphonops annulatus (Mikan, 1920) we observed a concentration of enlarged mucous glands in the head region. In the posterior region of the body a similar concentration is made up of enlarged poison glands. These accumulations of glands structurally resemble the macroglands previously reported in anurans and salamanders. The skin glands in these regions are each surrounded by collagen walls forming a honeycomb-like structure. The collagen network in the head …

The Premammillary Nucleus Of The Hypothalamus Is Not Necessary For Photoperiodic Timekeeping In Female Turkeys (Meleagris Gallopavo), Ashli F. Moore, Vincent M. Cassone, Kevin D. Alloway, Paul A. Bartell

Biology Faculty Publications

In birds, seasonal reproduction is regulated by day length, with long days in the spring activating the hypothalamic-pituitary-gonadal axis and reproductive behaviors. The photoreceptors mediating this process remain unknown, but recently, the premammillary nucleus (PMM) of the hypothalamus has been implicated as the site of photoperiodic signaling in turkeys. We performed electrolytic lesions of the PMM to elucidate its role in the photoactivation and maintenance of egg production in female turkeys. Our results show that ablation of the PMM does not alter the normal lay cycle. No differences were found between lesioned birds and sham controls in the latency to …

Effects Of Predispersal Insect Seed Predation On The Early Life History Stages Of A Rare Cold Sand-Desert Legume, Yi J. Han, Jerry M. Baskin, Dun Y. Tan, Carol C. Baskin, Ming Y. Wu

Biology Faculty Publications

Seed predation by insects is common in seeds of Fabaceae (legume) species with physical dormancy (PY). However, the consequences of insect seed predation on the life history of legumes with PY have been little studied. In the largest genus of seed plants, Astragalus (Fabaceae), only one study has tested the effects of insect predation on germination, and none has tested it directly on seedling survival. Thus, we tested the effects of insect predation on seed germination and seedling growth and survival of Astragalus lehmannianus, a central Asian sand-desert endemic. Under laboratory conditions, seeds lightly predated in the natural habitat …

Landscape-Scale Effects Of Supra-Seasonal Drought On Semi-Aquatic Snake Assemblages, Philip N. Vogrinc, Andrew M. Durso, Christopher T. Winne, John D. Willson

Biology Faculty Publications

Climate change is predicted to alter the frequency and intensity of precipitation events, placing stress on freshwater aquatic ecosystems and their associated wildlife. Thus, understanding interspecific variation in drought sensitivity and the repeatability of those responses across heterogeneous landscapes is critical. Semi-aquatic snakes serve important roles within aquatic ecosystems and several species are threatened. Yet, little is known about the effects of drought on semi-aquatic snake populations or assemblages. We systematically trapped 20 isolated wetlands in South Carolina before (2006) and after (2013) a multi-year supra-seasonal drought to determine drought-induced shifts in occupancy and detection for five semi-aquatic snake species. …

Reducing Pseudoscientific And Paranormal Beliefs In University Students Through A Course In Science And Critical Thinking, James A. Wilson

Biology Faculty Publications

No abstract provided.

Fluorescence Intensity And Lifetime Quenching Of Ceria Nanoparticles As Optical Sensor For Tiny Metallic Particles, Effat Samir, Nader Shehata, Ishac Kandas

Biology Faculty Publications

Ceria nanoparticles are studied as optical probe for different types of tiny metallic particles using fluorescence quenching technique. The synthesized ceria nanoparticles are characterized by having formed charged oxygen vacancies, which can be considered as the main receptors for the used tiny metallic particles to be sensed or absorbed. Under near-UV excitation, the visible fluorescent emission intensity is found to be reduced with increasing the concentration of the studied tiny metallic particles in an aqueous solution. To emphasize the optical sensing process, ceria nanoparticles fluorescence lifetime measurements were demonstrated before and after adding the tiny metallic particles. In addition, Stern– …

Condition-Dependence Of Blue Plumage Coverage In Indigo Buntings Passerina Cyanea, Spencer B. Hudson, Travis E. Wilcoxen

Biology Faculty Publications

Nuptial plumage colouration is seemingly favoured by females of avian species with regards to sexual selection. This particular secondary sexual characteristic has been previously shown to be a condition-dependent signal of individual quality among passerines with pigment-based colouration (i.e. yellows and reds). In contrast, relationships between structural plumage colouration (i.e. blues) and aspects of both physical quality and physiological function have been understudied. Using free-living Indigo Buntings (Passerina cyanea) as a study species, we compared the percentage of blue feather coverage to body condition, innate immune responses, antioxidant capacity, stress physiology, reproductive physiology, and …