Biology Commons^™

Shrimp Stocking, Salmon Collapse, And Eagle Displacement, Craig N. Spencer, B. Riley Mcclelland, Jack Arthur Stanford

Biological Sciences Faculty Publications

No abstract provided.

Intracellular Ph Decreases During Entry Into Estivation In The Land Snail Oreohelix, Bernard Rees

Biological Sciences Faculty Publications

No abstract provided.

Seasonal Phytoplankton Assemblages Associated With The Chesapeake Bay Plume, Harold G. Marshall

Biological Sciences Faculty Publications

Waters associated with the Chesapeake Bay plume were highly variable, unstable, and subject to the influence of flow patterns into and out of the Bay. Seasonal phytoplankton assemblages were identified for this region, with the phytoplankton development similar to the seasonal spring-fall growth maxima over the shelf, yet influenced by the multi-pulsed patterns often noted in the lower Bay. Major dominants included species common to both the shelf and lower Chesapeake Bay.

The Divergent Receptors For Tnf, Stephen R. Sprang

Biological Sciences Faculty Publications

No abstract provided.

Reproduction In The Hispid Cotton Rat, Sigmodon-Hispidus Say And Ord (Rodentia: Muridae), In Southeastern Virginia, Robert K. Rose, Michael H. Mitchell

Biological Sciences Faculty Publications

The hispid cotton rat, Sigmodon hispidus Say and Ord, a species of the southwestern United States that has been moving northward and eastward in this century, was first observed in Virginia in 1940. In this study of the cotton rat in southeastern Virginia, most males were reproductively competent from February through November, embryos were recorded from March through October, and litter sizes were comparable to those from other locations except Kansas. Also unlike the cotton rat in Kansas, animals grew at substantial rates during the winter in Virginia. The hispid cotton rat seems to have adjusted its breeding season in …

Small Mammals In The Great Dismal Swamp Of Virginia And North Carolina, Robert K. Rose, Roger K. Everton, Jean F. Stankavich

Biological Sciences Faculty Publications

Small" mammals were surveyed in a range of habitats in the Great Dismal Swamp of Virginia and North Carolina. The survey is based on three chronologically overlapping studies, each lasting 15-18 months and for which the results have been reported separately. A different trapping method was used in each of the three studies: nest boxes, Fitch live traps, or pitfall traps. Only two species of mammals, both arboreal, were taken in nest boxes, compared with 10 and 9 species in Fitch live traps and pitfall traps, respectively. The Fitch live traps had a much higher catch rate per 1,000 trap-nights …

Characterization And Expression Of The Cbbe' Gene Of Coxiella Burnetii, Michael F. Minnick, Robert A. Heinzin, Marvin Eugene Frazier, Louis P. Mallavia

Biological Sciences Faculty Publications

A gene which is unique to the QpRS plasmid from chronic isolates of Coxiella burnetii was cloned, sequenced, and expressed in Escherichia coli. This gene, termed cbbE', codes for a putative surface protein of approximately 55 kDa, termed the E' protein. The cbbE' gene is 1485 bp in length, and is preceded by predicted promoter regulatory sequences of TTTAAT (-35), TATAAT (-10), and a Shine-Dalgarno sequence of GGAGAGA, all of which closely resemble those of E. coli and other rickettsiae. The open reading frame (ORF) of cbbE' ends with a UAA codon followed by a second in-frame UAG stop codon …

Bird Flight - Insights And Complications, G. E. Goslow Jr., Kenneth P. Dial, F. A. Jenkins Jr.

Biological Sciences Faculty Publications

No abstract provided.

Migration Routes Of New World Sanderlings (Calidris Alba), J. P. Meyers, M. Sallaberry A., E. Ortiz, G. Castro, L. J. Gordon, John L. Maron, C. T. Schick, E. Tablio, P. Antas, T. Below

Biological Sciences Faculty Publications

We color-marked Sanderlings (Calidris alba Pallas) at 19 locations in 6 countries in the New World and coordinated a network of volunteers to locate banded individuals in migration over a five-year period. The observers reported 252 independent sightings of birds in countries different from the country of banding. Sanderlings that migrate north to the Arctic from Chile and Peru travel principally through the central corridor (Texas and northward) of the United States and Canada; smaller numbers follow the Pacific coast. A few migrate north from the Pacific coast of South America along the Atlantic coast of the United …

Heat Dissipation, Gas Exchange And Acid-Basic Balance In The Land Snail Oreohelix During Short-Term Estivation, Bernard Rees

Biological Sciences Faculty Publications

Within 4 days following entry into estivation, heat dissipation and oxygen consumption by the land snail Oreohelix spp. decreased by 83 % compared to standard non-estivating rates. During both non-estivating and estivating conditions, the quantity of heat dissipated per mole of O2 consumed was indicative of a completely aerobic metabolism. This calorimetric-respirometric (C/R) ratio was — 461 ± 12 kJ moP102 (S.E.M., N=5) under standard non-estivating conditions and — 464±26kJmol~1O2 (7V=4) during estivation. Respiratory exchange ratios reflected a primary dependence upon carbohydrate as a metabolic substrate during both states. Carbon dioxide retention occurred during the first 36h of estivation, resulting …

Identification And Characterization Of Peptidoglycan-Associated Proteins In Neisseria-Gonorrhoeae, Stuart A. Hill, Ralph C. Judd

Biological Sciences Faculty Publications

The principal proteins associated with Neisseria gonorrhoeae peptidoglycan (PG), as identified by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, are the following: two proteins at approximately 90 kilodaltons (kDa), single major species at both 60 and 44 kDa, a 34- to 36-kDa protein, and three proteins between 28 and 32 kDa. A protein analogous to Escherichia coli Braun lipoprotein was not detected with gonococcal cell wall preparations. The identity of the PG-associated proteins was confirmed immunologically with antibody generated against purified cell walls. Two types of protein species, dithiothreitol extractable (the majority) and alkylation dependent (primarily the 34- to 36-kDa protein), appeared …

Detection In Soil Of A Deletion In An Engineered Dna Sequence By Using Dna Probes, Janet K. Jansson, William E. Holben, James M. Tiedje

Biological Sciences Faculty Publications

Two Pseudomonas strains were engineered to contain the nptII gene and plasmid vector sequences in their chromosomes. After incubation of these strains in nonsterile soil, total bacterial DNA was isolated and analyzed by Southern blot hybridization with the nptII gene and the plasmid vector as probes. In addition to the expected bands of hybridization, a new band corresponding to the loss of vector sequences from the chromosome while retaining the nptII gene was observed for one of the strains. The more stressful conditions encountered in soil appeared to increase the frequency of loss of the vector sequences …

The Structure Of Tumor Necrosis Factor-Α At 2.6 Å Resolution. Implications For Receptor Binding, M. J. Eck, S. R. Sprang

Biological Sciences Faculty Publications

The three-dimensional structure of tumor necrosis factor (TNF-α), a protein hormone secreted by macrophages, has been determined at 2.6 Å resolution by x-ray crystallography. Phases were determined by multiple isomorphous replacement using data collected from five heavy atom derivatives. The multiple isomorphous replacement phases were further improved by real space symmetry averaging, exploiting the non-crystallographic 3-fold symmetry of the TNF-α trimer. An atomic model corresponding to the known amino acid sequence of TNF-α was readily built into the electron density map calculated with these improved phases. The 17,350-dalton monomer forms an elongated, antiparallel β-pleated sheet sandwich with a 'jelly-roll' topology. …

Micronuclear Genome Organization In Euplotes Crassus: A Transposonlike Element Is Removed During Macronuclear Development, Scott Everet Baird, Gina M. Fino, Susan L. Tausta, Lawrence A. Klobutcher

Biological Sciences Faculty Publications

After mating, hypotrichous ciliated protozoa transform a set of their micronuclear chromosomes into thousands of short, linear DNA molecules that form the macronuclear genome. To examine micronuclear genome organization in the hypotrich Euplotes crassus, we have analyzed two cloned segments of micronuclear DNA as well as the macronuclear DNA molecules that are derived from them. E. crassus was found to display a number of features characteristic of other hypotrich genomes, including (i) clustering and close spacing of the precursors of macronuclear DNA molecules, (ii) the frequent occurrence of internal eliminated sequences within macronuclear precursors, (iii) overlapping macronuclear precursors, (iv) lack …

Kinetic Properties Of Hexokinase Under Near-Physiological Conditions: Relation To Metabolic Arrest In Artemia Embryos During Anoxia, Bernard Rees

Biological Sciences Faculty Publications

Previous analyses of glycolytic metabolites in Artemia embryos indicate that an acute inhibition of glucose phosphorylation occurs during pHi-mediated metabolic arrest under anoxia. We describe here kinetic features of hexokinase purified from brine shrimp embryos in an attempt to explain the molecular basis for this inhibition. At saturating concentrations of cosubstrate, ADP is an uncompetitive inhibitor toward glucose and a partial noncompetitive inhibitor toward ATP (Kis = 0.86 mM, Kii = 1.0 mM, Kid = 1.9 mM). With cosubstrates at subsaturating concentrations, the uncompetitive inhibition versus glucose becomes noncompetitive, while inhibition versus ATP remains partial noncompetitive. The partial noncompetitive inhibition …

Isolation, Growth Characteristics, And Long-Term Storage Of Fungi Cultivated By Attine Ants, Jerome J. Howard

Biological Sciences Faculty Publications

Seven pure-culture strains of fungi cultivated by attine ants (ant-garden fungi) were isolated from locally maintained leaf-cutting ant colonies. An ant-garden fungus strain obtained from an Atta cephalotes colony, when offered to ants of the colony from which the fungus was isolated, was accepted as their own. Young fungus cultures were harvested and incorporated into the fungus garden, and cultures of intermediate age were used to begin a new fungus garden; old cultures were simply harvested. To facilitate further research on this fungus, growth characteristics of the different isolates were studied under a variety of conditions. They grew better at …

Export And Intercellular Transfer Of Dna Via Membrane Blebs Of Neisseria-Gonorrhoeae, David W. Dorward, Claude F. Garon, Ralph C. Judd

Biological Sciences Faculty Publications

Naturally elaborated membrane bleb material is frequently observed in cultures of Neisseria gonorrhoeae. This material was purified and analyzed for protein, lipopolysaccharide, and nucleic acid content. The electrophoretic protein profiles of two bleb-rich fractions, called BI and BII, were distinct, with only BII containing lipopolysaccharide and outer membrane proteins I and III. Both fractions contained RNA, circular DNA, and linear DNA. Exogenous pancreatic DNase I appeared to hydrolyze all bleb-associated DNA in fraction BI and the linear DNA in fraction BII. The circular DNA molecules associated with fraction BII resisted digestion. Electron microscopy of the bleb fractions verified their DNA …

Protein I: Structure, Function, And Genetics, Ralph C. Judd

Biological Sciences Faculty Publications

No abstract provided.

Characterization Of Chromosome Fragmentation In Two Protozoans And Identification Of A Candidate Fragmentation Sequence In Euplotes Crassus, Scott Everet Baird, Lawrence A. Klobutcher

Biological Sciences Faculty Publications

Following the sexual cycle, hypotrichous ciliated protozoans fragment a set of their micronuclear chromosomes to generate the thousands of short, linear DNA molecules present in the transcriptionally active macronucleus. We have used a hybrid selection procedure to examine macronuclear DNA molecules for subtelomeric length heterogeneity to determine whether chromosome fragmentation occurs at unique or multiple sites. The results suggest that multiple, but closely spaced, chromosome fragmentation sites are used by Oxytricha nova. In contrast, Euplotes crassus uses unique chromosome fragmentation sites in a reproducible manner to generate the ends of macronuclear DNA molecules. Additional studies compared DNA sequences in …

Phytoplankton Composition In A Borrow Pit Lake In Virginia, Seba B. Sheavly, Harold G. Marshall

Biological Sciences Faculty Publications

The phytoplankton assemblages in Lake Trashmore, Virginia, a borrow pit, were dominated by centric diatoms and cyanobacteria, with seasonal pulses of cryptomonads, euglenoids, and chlorophyceans. Ninety species were identified and their abundance levels noted for a 12-month period.

Community Responses To Variable Predation: Field Studies With Sunfish And Freshwater Macroinvertebrates, Mark J. Butler Iv

Biological Sciences Faculty Publications

The impact of variable predation by bluegill sunfish on macroinvertebrate prey in a North Florida lake is examined. Variable predation may occur in many systems and may contribute substantially to the spatial heterogeneity, temporal inconstancy and species composition of prey communities.

Patchy, temporally variable predation characterized middepth and deep lake habitats, whereas in the shallow zone predation was relatively constant and homogeneous. Predation varied significantly every 2-4 wk in the mid-depth zone, but varied little between consecutive weeks or days. Caging experiments revealed that variable predation altered prey community composition and increased the mean size and size range of some …

Probing The Alpha-Sarcin Region Of Escherichia-Coli 23s Rrna With A Cdna Oligomer, Gary A. White, Ted Wood, Walter E. Hill

Biological Sciences Faculty Publications

The cause of 50S ribosomal subunit collapse reportedly triggered by hybridization of a 14-base cDNA probe to the alpha-sarcin region of 23S rRNA was investigated by physical measurement of probe-subunit complexes in varying buffer conditions. The results reported here show that this probe was unable to hybridize to its target site in the intact 50S subunit and the physical characteristics of 50S subunits remained unchanged in its presence. Subunit collapse was induced in buffer containing 20mM Tris-HCl (pH 7.5), 600 mM NH4Cl, 1 mM MgCl2, 1 mM DTT, and 0.1 mM EDTA in the absence of probe. The probe bound …

Crystallization Of Trimeric Recombinant Human Tumor Necrosis Factor (Cachectin), M. J. Eck, B. Beutler, G. Kuo, J. P. Merryweather, S. R. Sprang

Biological Sciences Faculty Publications

Crystals of tumor necrosis factor (TNF) have been obtained in two forms. Rhombohedral crystals grow in 1.8 to 2.0 M ammonium sulfite, pH 7.8 at 21°C, and tetragonal crystals grow in 2.6 M magnesium sulfate, pH 5.5 at 25°C. Analysis of TNF by isoelectric focusing under native and denaturing conditions indicates that TNF molecules exist as trimers in solution. The rhombohedral cachectin crystals belong to space group R3 and have unit cell constants a = b = c = 47.65 Å and α = β = γ = 88.1°. Density determinations and the space group indicate that the unit cell …

Comparative Analysis Of The Effects Of Visual And Auditory Stimuli On Avian Mobbing Behavior, C. Ray Chandler, Robert K. Rose

Biological Sciences Faculty Publications

Both visual and auditory stimuli elicit avian mobbing behavior, but there is little comparative information on their isolated and additive effects. Using three combinations of two experimental stimuli (mount and tape of an Eastern Screech-Owl, Otus asio) we tested the effects of stimuli on the frequency, intensity, and duration of avian mobbing behavior. Of 169 mount-only trials, only 11 (6.5%) were successful in attracting birds. Tape-only (n = 169) and mount-and-tape (n = 170) were equally successful in attracting birds (approximately 85% of all trials), but mount-and-tape trials were more likely to initiate mobbing behavior. Birds responding …

Dna Probe Method For The Detection Of Specific Microorganisms In The Soil Bacterial Community, William Holben, Janet K. Jansson, Barry K. Chelm, James M. Tiedje

Biological Sciences Faculty Publications

We developed a protocol which yields purified bacterial DNA from the soil bacterial community. The bacteria were first dispersed and separated from soil particles in the presence of polyvinylpolypyrrolidone, which removes humic acid contaminants by adsorption to this insoluble polymer. The soil bacteria were then collected by centrifugation and lysed by using a comprehensive protocol designed to maximize disruption of the various types of bacteria present. Total bacterial DNA was purified from the cell lysate and remaining soil contaminants by using equilibrium density gradients. The isolated DNA was essentially pure as determined by UV spectral analysis, was at least 48 …

Identification Of Defined Sequences In Domain V Of E.Coli 23s Rrna In The 50s Subunit Accessible For Hybridization With Complementary Oligodeoxyribonucleotides, Richard T. Marconi, Walter E. Hill

Biological Sciences Faculty Publications

The accessibility of specific sequences in domain V of E. coli 23s rRNA in the 50S subunit to complementary oligodeoxyribonucleotides (cDNA) has been investigated. The apparent percentage of subunits engaged in complex formation was determined by incubation of radiolabeled cDNA probe with 50S subunits, followed by nitrocellulose membrane filtration of the reaction mixtures and measurement of the bound radiolabeled cDNA probes by liquid scintillation counting of the filters. The site(s) of hybridization were determined by digestion of the RNA in the RNA/DNA heteroduplex by RNase H. The results of this study indicated that single-stranded sequences, 2058-2062, 2448-2454, 2467-2483, and 2497-2505 …

Leafcutting And Diet Selection: Relative Influence Of Leaf Chemistry And Physical Features, Jerome J. Howard

Biological Sciences Faculty Publications

The effects of leaf toughness, trichome characteristics, nutrient and water availability, and secondary chemistry on diet selection by the leafcutting ant Atta cephalotes were determined using individuals of 49 woody plant species from a tropical deciduous forest in Costa Rica. The palatability of plants was measured by presenting whole leaves to leafcutting ant foragers on trails and counting the number of pieces cut from leaves. The effectiveness of physical barriers to leaf cutting was evaluated by measuring the speed with which ants were able to cut leaves of varying toughness, trichome densities, and trichome lengths. Plant secondary chemistry was highly …

Use Of Woody Vegetation By Beavers In Southeastern Virginia, John L. Echternach, Robert K. Rose

Biological Sciences Faculty Publications

Nonbreeding and sometimes transient beavers, Castor canadensis, cut a variety of woody plants throughout the year during a 15-month study at three sites in southeastern Virginia. Ten species of trees were cut in proportions greater than would be expected according to their availabilities. Beavers heavily used viburnum, alder, ironwood, bayberry, tulip poplar, and dogwood. Winter food caches were constructed but were only lightly used.

Nearctic Avian Migrants In The Neotropics By J. H. Rappole; E. S. Morton; T. E. Lovejoy, Jr.; J. L. Ruos, Richard L. Hutto

Biological Sciences Faculty Publications

No abstract provided.

Leafcutting Ant Diet Selection: The Role Of Nutrients, Water, And Secondary Chemistry, Jerome J. Howard

Biological Sciences Faculty Publications

The relationship of plant secondary chemistry, water content, and nutrient content to the palatability of leaves to the leafcutting ant Atta cephalotes was determined in a study of individuals from 50 woody plant species in tropical dry forest of Costa Rica. The study took place during the yearly period of maximum leaf harvest, in the early rainy season. The palatability of plants was determined by presenting leaf disks to ants on active foraging trails of three ant colonies. The distribution of several classes of polar secondary compounds in leaf samples was determined using chemical spot tests, and that of ant- …