Biology Commons^™

Spots Of Adult Male Red-Spotted Newts Are Redder And Brighter Than In Females: Evidence For A Role In Mate Selection?, Andrew K. Davis, Kristine L. Grayson

Biology Faculty Publications

As aquatic adults, eastern red-spotted newts (Notophthalmus v. viridescens) are generally green with two rows of dorsal spots, which vary in number between individuals and range in colour from orange to red. The function of these spots is unknown, but it is possible that they serve as sexual ornamentations and we examined this hypothesis by testing for sexual dimorphism in spot characteristics. We used an image analysis approach that has been used previously with this and other amphibian species to compare the number, size and colour – redness (hue score) and brightness – of spots in 100 male …

Exploring The Role Of Iscsua And Suf Operon In Shigella Flexneri Invasion And Resistance To Oxidative Stress, Benjamin R. Lloyd

Honors Theses

Shigella flexneri is a facultative intracellular pathogen capable of causing dysentery, a condition that afflicts many around the world, especially in developing countries. There are several aspects of Shigella pathogenesis that are not well understood, including a number of genetic and cellular changes that allow Shigella to adapt to stresses encountered while invading and replicating within the eukaryotic cytosol. It was the goal of this research to examine the roles of iscSUA and suf, gene systems predicted to encode for iron-sulfur cluster biosynthesis proteins, in Shigella surviving exposure to oxidative stress agents and during Shigella invasion and plaque formation …

Use Of Phylogenetic Stains To Determine The Feeding Preferences Of Microbivorous Soil Nematodes, E. Harlan Michelle

Honors Theses

Due to their numerous and diverse roles in soil ecological processes – most notably decomposition and nutrient mineralization – nematodes have long been recognized as important biotic indicators of soil health (Ekschmitt et al., 2001; Ritz and Trudgill, 1999). The predominate means of assessing the information that these organisms might contain has been through nematode community analyses, a methodology that seeks to convert the vast amount of data regarding features such as diversity, maturity and richness into a series of indices which can be used to evaluate soil health and make comparisons across samples. Performance of these analyses typically involves …

Characterization Of Sox Family Members In Sponge Stem Cells And During Development, Karen E. Leeds

Honors Theses

Sponges are considered the oldest and most basal part of the metazoan lineage and therefore possess a unique set of gene families that are highly conserved among all animals. One of these gene families is known as Sox transcription factors. Sox genes are known to play important roles in complex animals such as the specification of the primary layers of the body, determination of sex, and most recently induction of induced pluirpotent stem cells (iPS cells) from both human and mouse fibroblasts with the help of three other transcription factors. We have found that two different demosponge species Halichondria bowerbanki …

A New Reproductive Mode In The Genus Melanzophryniscus Gallardo, 1961 (Anura: Bufonidae) With Description Of A New Species From The State Of Paraná, Brazil, José A. Langone, Magno V. Segallo, Marcos Bornschein, Rafael O. De Sá

Biology Faculty Publications

A new species of bufonid toad of the genus Melanophryniscus is described from a mountaintop that is part of the Serra do Mar in the northeastern State of Paraná, Brazil. Melanophryniscus alipioi sp. nov. is distinguished from other known species by its uniformly dark brown dorsal color and a unique breeding site. The new species reproduces in bromeliads, a reproductive mode previously unknown for this genus. This species might be susceptible to current habitat lost.

What Do Students Have To Say About Ecology And Evolution? Using Podcasting To Apply Integrative Biology Themes Across The Tree Of Life, Amy M. Treonis, Malcolm Hill, Theresa Dolson, Sue Mcginnis, Elizabeth Miles

Biology Faculty Publications

We describe a versatile podcasting assignment that requires students to (i) review primary and secondary literature relating to an assigned organism with the goal of identifying the main features of its ecology and evolution, (ii) prepare an enhanced podcast about their organism, and (iii) critique peer podcasts. The goal of this assignment is for each student to gain a fuller appreciation for and understanding of biological diversity. This assignment will enhance students' research, technology, and communication skills while reinforcing the main themes of integrative biology.

The Exploration Of Novel Symbiotic Bacteria That May Have Influential Roles In Sponge Life History, Brittany E. West

Honors Theses

Sponges produce an impressive variety of secondary metabolites that perform a variety of ecological functions. Many marine sponges even harbor diverse carotenoid compounds, an unusual class of secondary metabolites that animals are incapable of producing. Furthermore, sponges serve as hosts to an astonishingly diverse microbial community that can occupy up to sixty percent of a sponge's biomass. Our research ultimately hopes to link microbial species to the production of secondary compounds, like carotenoids, and to assess the ecological role of such compounds and their effect on sponge life history strategy. This study describes the ecological distribution of two species of …

Modulation Of Fast-Inactivating Potassium Channels By Accessory Subunits And Fatty Acids : A Role For Calcium?, Michelle M. Drzewiecki

Honors Theses

Potassium channel interacting proteins (KChIPs) co-assemble with Kv4 a subunits to form native complexes that encode considerable components of neuronal somatodendritic A- type K+current (Is,J in neurons, and transient outward current (ho) in cardiac myocytes. The binding of KChIPs to the cytoplasmic N-termini of Kv4 a subunits enhances surface expression by facilitating intracellular trafficking, stimulates subunit assembly, and regulates the functional gating properties of Kv4 channels. KChIPs, like many other neuronal calcium sensor proteins, contain four EF-hand calcium binding sites; two of which (EF-3 and 4) have particularly high affinity for calcium. Because Ca2+ is an important signaling molecule for …

Leptodactylus Cunicularius Sazima And Bokermann Rabbit-Burrow Frog, W. R. Heyer, M. M. Heyer, Rafael O. De Sá

Biology Faculty Publications

Adult Leptodactylus cunicularius are moderately small. The head is longer than wide and the hind limbs are long (Table 1; Heyer and Thompson 2000 provided definitions of adult size and leg length categories for Leptodactylus). Male vocal sacs are internal, not externally expanded. The snout is protruding, not sexually dimorphic. Male forearms are not hypertrophied and males lack asperities on the thumbs and chest. The dorsum is variegated with small, often confluent, spots and blotches. There is a very thin interrupted mid-dorsal light stripe (pinstripe). Usually, there is a noticeable light, irregular, elongate, mid-dorsal blotch in the scapular region. …

Is The Amphibian Tree Of Life Really Fatally Flawed?, Darrel R. Frost, Taran Grant, Julian Faivovich, Raoul H. Bain, Alexander Haas, Celio F.B. Haddad, Rafael O. De Sá, Et Al.

Biology Faculty Publications

Wiens (2007, Q. Rev. Biol. 82, 55–56) recently published a severe critique of Frost et al.'s (2006, Bull. Am. Mus. Nat. Hist. 297, 1–370) monographic study of amphibian systematics, concluding that it is “a disaster” and recommending that readers “simply ignore this study”. Beyond the hyperbole, Wiens raised four general objections that he regarded as “fatal flaws”: (1) the sampling design was insufficient for the generic changes made and taxonomic changes were made without including all type species; (2) the nuclear gene most commonly used in amphibian phylogenetics, RAG-1, was not included, nor were the morphological characters that had justified …

Designation Of A Neotype For Leptodactylus Gracilis (Duméril And Bibron, 1840) (Amphibia: Leptodactylidae), Rafael O. De Sá, A. Dubois, A. Ohler

Biology Faculty Publications

The examination of the preserved specimens in the herpetological collection of the Museum National d'Histoire Naturelle, along with a review of the original literature, indicates that no extant specimen can be undoubtedly identified as the holotype of Leptodactylus gracilis (DumCri.l and Bibron, 1840). Furthermore, it revealed that the type locality recently assigned to this taxon is in error.

Description Of The Tadpole Of Leptodactylus Pustulatus Peters, 1870 (Anura: Leptodactylidae), Rafael O. De Sá, Reuber Brandão, Lorena Dall'ara Guimarães

Biology Faculty Publications

The external morphology and oral disc of the tadpole of Leptodactylus pustulatus Peters, 1870, are described and illustrated for Gosner stage 39. The internal oral anatomy was analyzed with SEM at Gosner stage 36 whereas chondrocranial anatomy is reported for Gosner stage 35. The overall characteristics do not depart from those known for the genus Leptodactylus and they particularly agree for those of the melanonotus species group. The labial tooth row formula is 2(2)/3. Observations are presented that suggest that L. pustulatus engages in larval parental care.

Resumo

São descritas a morfologia externa e o disco oral do girino de …

Improving Natural History Research With Image Analysis: The Relationship Between Skin Color, Sex, Size And Stage In Adult Red-Spotted Newts, Andrew K. Davis, Kristine L. Grayson

Biology Faculty Publications

Natural history researchers are increasingly using digital cameras and computer software to measure their study animals. Adult Red-spotted Newts (Notophthalmus viridescens viridescens) are known to display a range of skin colors, from brown to green, but it has not been possible to quantify this variation until the advent of image analysis technology. We used an image analysis approach to compare skin color between sexes, across a range of sizes, and between aquatic and post-breeding (emigrating to the terrestrial habitat) stage adult newts. From 232 individuals (53% male, 47% female) we documented a wide but subtle range of skin …

The Tadpole Of Eupsophus Queulensis (Anura, Cycloramphidae), Diana R. Cárdenas-Rojas, Alberto Veloso, Rafael O. De Sá

Biology Faculty Publications

The genus Eupsophus is characterized by endotrophic larvae that inhabit water-filled cavities. The larvae feed from large yolk reserves during metamorphosis. The external morphology has been described for four of the ten known species and data on larval chondrocranial morphology are available only for one. We describe the extema1 morphology, oral disc and chondrocranial anatomy of the larvae of Eupsophus queulensis. The characteristics of E. queulensis tadpoles are compared with those of other Eupsophus larvae.

The Tadpole Of Leptodactylus Notoaktites Heyer, 1978 (Anura, Leptodactylidae), Rafael O. De Sá, José A. Langone, Magno V. Segalla

Biology Faculty Publications

The external morphology and oral disc of the tadpole of Leptodactylus notoaktites Heyer, 1978, are described and illustrated for Gosner’s stage 33. The internal oral anatomy was analyzed under SEM at Gosner’s stage 36 whereas chondrocranial anatomy is reported for Gosner’ stage 38. The morphology of this tadpole is compared with those available for other species of the L. mystaceus complex. The overall characteristics do not depart from those known for the genus Leptodactylus and they particularly agree for those of the fuscus species group. The labial tooth row formula is 2(2)/3.

Glow Sticks As Effective Bait For Capturing Aquatic Amphibians In Funnel Traps, Kristine L. Grayson, Andrew W. Roe

Biology Faculty Publications

Funnel traps of various designs have been used to capture adults and larvae of aquatic amphibians (e.g., Buech and Egeland 2002; Richter 1995). Most studies use unbaited funnel traps to capture amphibians while others have used shrimp or salmon eggs (Adams et al. 1997). Light traps and light sticks are commonly used in studies of fish, particularly larvae (Doherty 1987; Marchetti et al. 2004), but have not been widely used to capture amphibians. Glow sticks have been mentioned briefly in the literature as a means to increase capture rates of aquatic amphibians (Smith and Rettig 1996), but no studies have …

Karyotypes Of Eight Species Of Leptodactylus (Anura, Leptodactylidae) With A Description Of A New Karyotype For The Genus, Renata Cecília Amaro-Ghilardi, Gabriel Skuk, Rafael O. De Sá, Miguel Trefaut Rodrigues, Yatiyo Yonenaga-Yassuda

Biology Faculty Publications

Karyotypes of eight species of Leptodactylus (Anura, Leptodactylidae) with a description of a new karyotype for the genus. Eight species of the Neotropical genus Leptodactylus were karyologically studied: seven of them (L. gracilis, L. mystacinus, L. petersii, L. pustulatus, L. macrosternum, L. ocellatus, L. labyrinthicus) presented 2n=22 and L. silvanimbus showed a distinctive karyotype with 2n=24. Nucleolar organizer regions (Ag-NORs) were detected in two different pairs of chromosomes: pair 4 at the proximal region of the long arm of one individual of L. mystacinus from São Paulo state and of L. petersii; and …

Genetic Resolution Of The Enigmatic Lesser Antillean Distribution Of The Frog Leptodactylus Validus (Anura, Leptodactylidae), Keneth Yanek, W. R. Heyer, Rafael O. De Sá

Biology Faculty Publications

Leptodactylus validus has an unusual distribution, inhabiting Trinidad, Tobago, and the Lesser Antilles, but not the mainland of South America. This distribution is inconsistent with other distribution patterns observed for these islands. Although slight variation in adult morphology has been observed among the different island populations of L. validus, call data suggest the presence of a single species. Calls of L. pallidirostris from Venezuela and Brazil suggested that this taxon might be conspecific with L. validus. Sequence data from the 12S and 16S mt rDNA genes indicate that L. validus represents a single species throughout its distribution and is conspecific …

Rana Ocellata Linnaeus, 1758 (Currently Leptodactylus Ocellatus; Amphibia, Anura): Proposed Conservation Of Usage Of The Specific Name By The Designation Of A Neotype, W. Ronald Heyer, Ulisses Caramaschi, Rafael O. De Sá

Biology Faculty Publications

The purpose of this application, under Article 75.6 of the Code, is to conserve the usage of the specific name of Rana ocellata Linnaeus, 1758 for a species of leptodactylid frog from South America by the designation of a neotype. Prevailing usage of the name is threatened by the identity of the type specimen which is a different species than that which is currently known as Leptodactylus ocellatus. It is proposed that all name-bearing types be set aside and a neotype designated in accord with prevailing usage.

The Distress Calls Of Leptodactylus Chaquensis Cei, 1950 And Leptodactylus Elenae Heyer, 1978 (Anura: Leptodactylidae), José M. Padial, Rafael O. De Sá, Ignacio De La Riva

Biology Faculty Publications

We describe the distress calls of Leptodactylus chaquensis and Leptodactylus elenae. They each consist of a single, long, tonal sound with complex harmonic structure and complex frequency modulation. The distress calls of both species are different from their respective advertisement calls. Moreover, there are also clear interspecific differences. Harmonic frequencies in L. elenae are higher, there are fewer emphasized harmonics and the call is shorter and repeated at a higher rate (sometimes paired) than the call of L. chaquensis. Call duration, call rate, and position of the dominant harmonic change with the strength of the stimulus that the …

Phylogenetic Analyses Of Mtdna Sequences Reveal Three Cryptic Lineages In The Widespread Neotropical Frog Leptodactylus Fuscus (Schneider, 1799) (Anura, Leptodactylidae), Arley Camargo, Rafael O. De Sá, W. Ronald Heyer

Biology Faculty Publications

Leptodactylus fuscus is a neotropical frog ranging from Panamá to Argentina, to the east of the Andes mountains, and also inhabiting Margarita, Trinidad, and the Tobago islands. We performed phylogenetic analyses of 12S rRNA, 16S rRNA, tRNA-Leu, and ND1 mitochondrial (mt) DNA sequences from specimens collected across the geographic distribution of L. fuscus to examine two alternative hypotheses: (i) L. fuscus is a single, widely distributed species, or (ii) L. fuscus is a species complex. We tested statistically for geographic association and partitioning of genetic variation among mtDNA clades. The mtDNA data supported the hypothesis of several cryptic species within …

The Effects Of P53 Status And Egf On Timp-2 And Other Proteins Related To Migration In Human Glioblastoma Cell Cultures, Lisa M. Lint

Honors Theses

The effects of epidermal growth factor (EGF) on proteins that have been implicated in the migration of the Grade IV brain tumor, glioblastoma multiforme, were investigated in this study. Differential expression levels of TIMP-2, MMP-2, and MT1-MMP in response to EGF treatment were compared by immunoprecipitation, and immunoblotting. This study involved two different cultured glioma cell lines, U87, which expresses wild-type p53, and T98, which has a mutation in the p53 gene, in order to determine if the status of the p53 tumor suppression gene is a factor in the regulation of proteins involved in this migration pathway. It was …

Development Of Proliferation Assays To Explore The Role Of Calcium Activated Potassium Channels In Cell Proliferation, Sean Foster

Honors Theses

Due to the large variety of K^† channel families implicated in cancer cell proliferation, it is desirable to develop techniques capable of quickly and reliably screening a variety of potential channels for a role in proliferation. While there are many established cell counting procedures, the time-consuming nature of such protocols limits their usefulness in broadly identifying particular channels in uncharacterized cell lines. For this reason, a primary goal of the present research was the development of techniques capable of implicating particular ion channels in proliferation with both qualitative and quantitative data. Once this goal was accomplished, the project sought …

The Effect Of Tgf-B And Egf On Mmp-2 Activation And Mt1-Mmp Phosphorylation In U87mg And T98g Human Glioma Cells, Jacquelyn B. Knupp

Honors Theses

Glioblastoma multiforme (GBM), a high-grade, malignant brain tumor of astrocyte origin, invades normal brain tissue and most often results in death ofthe patient withinayearofdiagnosis. In order to invade the surrounding tissue and thereby metastasize, these tumor cells must migrate through the extracellular matrix. The pmpose ofthis research project is to investigate the family ofmatrix metalloproteinases responsible for extracellular degradation. Specifically, this investigation looks at MMP-2 activation via MT 1-MMP and the possible importance of phosphorylation of the tyrosine residue on the cytoplasmic tail of MTl-MMP. U87wildtypegliomacellsaswellasT98 p53 mutant glioma cells were treated with transforming growth factor beta (TGF-P). Preliminary results …

The Presence, Prevalence And Antibiotic Resistance Of Microbes In The Pamunkey River Basin, Christina Mcdowell

Honors Theses

This project examined the presence, prevalence and antibiotic resistance of Coliforms (mainly Escherichia coli), Staph/occocus aureus, fecal Streptococcus, andEnterobacteriacae found in the water samples taken from three selected sites on the North Anna, South Anna, and Little Rivers of the Pamunkey River Basin. The diversity and concentration of the microbes isolated from these sites was evaluated in late January and late March allowing for a comparison of the occurrence of microbes at different times and between the different sites. Over the course of two months the concentration of colonies increased based on colony counts from Nutrient agar. The rate of …

Leptodactylus Fragilis, Mirriiam Muedeking Heyer, W. Ronald Heyer, Rafael O. De Sá

Biology Faculty Publications

Leptodactylus fragilis (Brocchi) White-lipped thin-toed frogs are characteristically defined according to their habitation and age. There is a diagnosis of different species group within Leptodactylus. It is furthermore described from different perspectives and discoveries such as its eggs and karyotype. The distribution of the frog is considered to be prominent occurring form Southernmost Teaxs throughout Mexico and Middle America expanding to Venezuela. The fossil fuel records and literature on Leptodactylus are slighly viewed before studying its nomenclatural history and rarity.

The Amphibian Tree Of Life, Darrel R. Frost, Taran Grant, Julián Faivovich, Raoul H. Bain, Alexander Haas, Célio F.B. Haddad, Rafael O. De Sá

Biology Faculty Publications

The evidentiary basis of the currently accepted classification of living amphibians is discussed and shown not to warrant the degree of authority conferred on it by use and tradition. A new taxonomy of living amphibians is proposed to correct the deficiencies of the old one. This new taxonomy is based on the largest phylogenetic analysis of living Amphibia so far accomplished. We combined the comparative anatomical character evidence of Haas (2003) with DNA sequences from the mitochondrial transcription unit H1 (12S and 16S ribosomal RNA and tRNAValine genes, ø 2,400 bp of mitochondrial sequences) and the nuclear genes histone H3, …

Leptodactylus Fragilis (Brocchi): White-Lipped Thin-Toed Frog, Miriam M. Heyer, W. Ronald Heyer, Rafael O. De Sá

Biology Faculty Publications

Adult Leptodactylus fragilis are small. The head is longer than wide, and the hind limbs are moderately long (Table 1; Heyer and Thompson 2000 provided definitions of adult size and leg length categories for Leptodactylus). Male vocal sacs are laterally expanded and range from lightly gray speckled to darkly pigmented. Male snout is spatulate; female snout is rounded. Male forearms are not hypertrophied and males lack asperities on the thumbs and chest. The dorsum is spotted or blotched with dark markings, which are often chevron-shaped and sometimes confluent. The supratympanic fold is dark brown. A pair of dorsolateral folds …

Redescripción De La Morfología Larval Externa De Dos Especies Del Grupo De Leptodactylus Fuscus (Anura, Leptodactylidae), José A. Langone, Rafael O. De Sá

Biology Faculty Publications

Re-description of the larval external morphology of two species of the Leptodactylus fuscus group (Anura, Leptodactylidae). The larvae of Leptodactylus gracilis (D’Orbigny y Bibron, 1840) and L. mystacinus Bumeister, 1861 are re-described and compared with previous descriptions noting intraspecific variation in oral disc characteristics (arrangement of papillae and rows of cornified teeth). The external morphological analysis of larvae of the Leptodactylus fuscus group suggest that the lack of comparable descriptions among species, as well as the lack of analyses of their intraspecific variation, limits the use of larval characteristics for diagnostic purposes.

A Phylogenetic Analysis Of Vanzolinius Heyer, 1974 (Amphibia, Anura, Leptodactylidae): Taxonomic And Life History Implications, Rafael O. De Sá, W. Ronald Heyer, Arley Camargo

Biology Faculty Publications

The validity of the monotypic leptodactylid frog genus Vanzolinius Heyer, 1974 has been questioned recently. We explore the relationship of Vanzolinius discodactylus within the cluster of closely related genera Adenomera, Leptodacylus, and Lithodytes with both morphological and molecular data sets. Morphological and combined morphological and molecular data were analyzed using maximum parsimony; molecular data sets were analyzed with maximum likelihood methods. The resultant relationships are unambiguous in Vanzolinius being imbedded within Leptodactylus. In order to maintain Leptodactylus as a monophyletic genus, Vanzolinius is placed in the synonymy of Leptodactylus Fitzinger, 1826. The implications of relationships analyzed in …