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University of Nebraska - Lincoln

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Articles 361 - 390 of 932

Full-Text Articles in Biology

Dehydration Stress Memory: Gene Networks Linked To Physiological Responses During Repeated Stresses Of Zea Mays, Laetitia Virlouvet, Thomas J. Avenson, Qian Du, Chi Zhang, Ning Liu, Michael Fromm, Zoya Avramova, Sabrina E. Russo Jul 2018

Dehydration Stress Memory: Gene Networks Linked To Physiological Responses During Repeated Stresses Of Zea Mays, Laetitia Virlouvet, Thomas J. Avenson, Qian Du, Chi Zhang, Ning Liu, Michael Fromm, Zoya Avramova, Sabrina E. Russo

School of Biological Sciences: Faculty Publications

Stress memory refers to the observation that an initial, sub-lethal stress alters plants’ responses to subsequent stresses. Previous transcriptome analyses of maize seedlings exposed to a repeated dehydration stress has revealed the existence of transcriptional stress memory in Zea mays. Whether drought-related physiological responses also display memory and how transcriptional memory translates into physiological memory are fundamental questions that are still unanswered. Using a systems-biology approach we investigate whether/how transcription memory responses established in the genome-wide analysis of Z. mays correlate with 14 physiological parameters measured during a repeated exposure of maize seedlings to dehydration stress. Co-expression network analysis revealed …

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Cross-Ecosystem Effects Of Terrestrial Predators Link Treefrogs, Zooplankton, And Aquatic Primary Production, Jessica L. Hite, Myra C. Hughey, Karen M. Warkentin, James R. Vonesh Jul 2018

Cross-Ecosystem Effects Of Terrestrial Predators Link Treefrogs, Zooplankton, And Aquatic Primary Production, Jessica L. Hite, Myra C. Hughey, Karen M. Warkentin, James R. Vonesh

School of Biological Sciences: Faculty Publications

Predators can directly or indirectly shape food webs through a combination of consumptive and non-consumptive effects. Yet, how these effects vary across natural populations and their consequences for adjacent ecosystems remains poorly resolved. We examined links between terrestrial predators and aquatic ecosystems through their effects on a locally abundant amphibian, the red-eyed treefrog (Agalychnis callidryas), which has arboreal eggs (heavily predated by snakes and wasps) and aquatic larvae; embryos can escape terrestrial threats by hatching at an earlier age and smaller size. Our multi-site field survey indicates that in natural populations, the relative contributions of these consumptive and non-consumptive effects …

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A Probable Case Of Incipient Speciation In Schizocosa Wolf Spiders Driven By Allochrony, Habitat Use, And Female Mate Choice, R. Tucker Gilman, Kasey Fowler-Finn, Eileen A. Hebets Jun 2018

A Probable Case Of Incipient Speciation In Schizocosa Wolf Spiders Driven By Allochrony, Habitat Use, And Female Mate Choice, R. Tucker Gilman, Kasey Fowler-Finn, Eileen A. Hebets

School of Biological Sciences: Faculty Publications

There is growing evidence that speciation can occur between populations that are not geographically isolated. The emergence of assortative mating is believed to be critical to this process, but how assortative mating arises in diverging populations is poorly understood. The wolf spider genus Schizocosa has become a model system for studying mechanisms of assortative mating. We conducted a series of experiments to identify the factors that control mate-pair formation in a Schizocosa population that includes both ornamented and nonornamented males. We show that the population also includes two previously unrecognized female phenotypes. One female phenotype mates mostly or exclusively with …

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Small Mammals In Cornfields And Associated Peripheral Habitats In Central Nebraska, Tyson J. Spanel, Keith Geluso Jun 2018

Small Mammals In Cornfields And Associated Peripheral Habitats In Central Nebraska, Tyson J. Spanel, Keith Geluso

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

In the Great Plains, many native grasslands have been converted to agricultural fields during the last two centuries. Peripheral habitats along edges of crop fields generally consist of linear habitats along roads, with many of these habitats used by native fauna. Our study examined capture rates and species composition of small mammals in cornfields, herbaceous roadside ditches, and wooded shelterbelts in central Nebraska. We captured nine species of small mammals. The Prairie Vole (Microtus ochrogaster) and Western Harvest Mouse (Reithrodontomys megalotis) were captured almost exclusively in roadside ditches, the White-footed Deermouse (Peromyscus leucopus) was …

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Predators Modify The Temperature Dependence Of Life-History Trade-Offs, Thomas M. Luhring, Janna M. Vavra, Clayton E. Cressler, John Delong Jun 2018

Predators Modify The Temperature Dependence Of Life-History Trade-Offs, Thomas M. Luhring, Janna M. Vavra, Clayton E. Cressler, John Delong

School of Biological Sciences: Faculty Publications

Although life histories are shaped by temperature and predation, their joint influence on the interdependence of life-history traits is poorly understood. Shifts in one life-history trait often necessitate shifts in another—structured in some cases by trade-offs— leading to differing life-history strategies among environments. The offspring size–number trade-off connects three traits whereby a constant reproductive allocation (R) constrains how the number (O) and size (S) of offspring change. Increasing temperature and size-independent predation decrease size at and time to reproduction which can lower R through reduced time for resource accrual or size-constrained fecundity. We investigated how O, S, and R in …

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Multiple True–False Questions Reveal The Limits Of The Multiple-Choice Format For Detecting Students With Incomplete Understandings, Brian A. Couch, Joanna K. Hubbard, Chad E. Brassil Jun 2018

Multiple True–False Questions Reveal The Limits Of The Multiple-Choice Format For Detecting Students With Incomplete Understandings, Brian A. Couch, Joanna K. Hubbard, Chad E. Brassil

School of Biological Sciences: Faculty Publications

By having students select one answer among several plausible options, multiple-choice (MC) questions capture a student’s preferred answer but provide little information regarding a student’s thinking on the remaining options. We conducted a crossover design experiment in which similar groups of introductory biology students were assigned verbatim questions in the MC format or multiple true–false (MTF) format, which requires students to separately evaluate each option as either true or false. Our data reveal that nearly half of the students who select the correct MC answer likely hold incorrect understandings of the other options and that the selection rates for individual …

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Parasite Rearing And Infection Temperatures Jointly Influence Disease Transmission And Shape Seasonality Of Epidemics, Marta S. Shocket, Daniela Vergara, Andrew J. Sickbert, Jason M. Walsman, Alexander T. Strauss, Jessica L. Hite, Meghan A. Duffy, Carla E. Caceres, Spencer R. Hall May 2018

Parasite Rearing And Infection Temperatures Jointly Influence Disease Transmission And Shape Seasonality Of Epidemics, Marta S. Shocket, Daniela Vergara, Andrew J. Sickbert, Jason M. Walsman, Alexander T. Strauss, Jessica L. Hite, Meghan A. Duffy, Carla E. Caceres, Spencer R. Hall

School of Biological Sciences: Faculty Publications

Seasonal epidemics erupt commonly in nature and are driven by numerous mechanisms. Here, we suggest a new mechanism that could determine the size and timing of seasonal epidemics: rearing environment changes the performance of parasites. This mechanism arises when the environmental conditions in which a parasite is produced impact its performance—independently from the current environment. To illustrate the potential for “rearing effects”, we show how temperature influences infection risk (transmission rate) in a Daphnia-fungus disease system through both parasite rearing temperature and infection temperature. During autumnal epidemics, zooplankton hosts contact (eat) fungal parasites (spores) reared in a gradually cooling environment. …

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Song Recognition And Heterospecific Associations Between 2 Fairy-Wren Species (Maluridae), Allison E. Johnson, Christina Masco, Stephen Pruett-Jones May 2018

Song Recognition And Heterospecific Associations Between 2 Fairy-Wren Species (Maluridae), Allison E. Johnson, Christina Masco, Stephen Pruett-Jones

School of Biological Sciences: Faculty Publications

Although heterospecific associations beneficial to one or both species involved (e.g. commensalisms or mutualisms) are common, it is generally assumed that interactions between species are transient and not particular to individuals. However, long-term interactions between individuals of different species do occur. In such heterospecific social groups, discrimination between heterospecific individuals may be beneficial, allowing individuals to direct beneficial or aggressive behaviors towards appropriate targets. Here, we describe heterospecific groups composed of splendid and variegated fairy-wrens (Malurus splendens and M. lamberti) and provide the first experimental evidence that recognition of heterospecific group members occurs across species. In these species, …

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Morphological Traits As Indicators Of Sexual Dimorphism In Prairie Rattlesnakes (Crotalus Viridis), Colleen Rothe-Groleau, Claudia M. Rauter, James D. Fawcett May 2018

Morphological Traits As Indicators Of Sexual Dimorphism In Prairie Rattlesnakes (Crotalus Viridis), Colleen Rothe-Groleau, Claudia M. Rauter, James D. Fawcett

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

As humans encroach into areas inhabited by predators, the potential of human-predator confrontations increases and the predators become regarded as dangerous pests. Predators exert a measure of population control over pest species such as small rodents, as well as limit the quantity and scope of diseases (e.g. spread of Hantavirus by these prey species). Control of these small rodent pest species can be aided by conserving and managing their predators like rattlesnakes (Crotalus spp). Management of any population requires detailed information on population composition and the ability to determine the key information (especially age and sex) for each individual …

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Body Size Downgrading Of Mammals Over The Late Quaternary, Felisa A. Smith, Rosemary E. Elliott Smith, S. Kathleen Lyons, Jonathan L. Payne Apr 2018

Body Size Downgrading Of Mammals Over The Late Quaternary, Felisa A. Smith, Rosemary E. Elliott Smith, S. Kathleen Lyons, Jonathan L. Payne

School of Biological Sciences: Faculty Publications

Since the late Pleistocene, large-bodied mammals have been extirpated from much of Earth. Although all habitable continents once harbored giant mammals, the few remaining species are largely confined to Africa. This decline is coincident with the global expansion of hominins over the late Quaternary. Here, we quantify mammalian extinction selectivity, continental body size distributions, and taxonomic diversity over five time periods spanning the past 125,000 years and stretching approximately 200 years into the future. We demonstrate that size-selective extinction was already under way in the oldest interval and occurred on all continents, within all trophic modes, and across all time …

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Energetic Tradeoffs Control The Size Distribution Of Aquatic Mammals, William Gearty, Craig R. Mcclain, Jonathan Payne Apr 2018

Energetic Tradeoffs Control The Size Distribution Of Aquatic Mammals, William Gearty, Craig R. Mcclain, Jonathan Payne

School of Biological Sciences: Faculty Publications

Four extant lineages of mammals have invaded and diversified in the water: Sirenia, Cetacea, Pinnipedia, and Lutrinae. Most of these aquatic clades are larger bodied, on average, than their closest land-dwelling relatives, but the extent to which potential ecological, biomechanical, and physiological controls contributed to this pattern remains untested quantitatively. Here, we use previously published data on the body masses of 3,859 living and 2,999 fossil mammal species to examine the evolutionary trajectories of body size in aquatic mammals through both comparative phylogenetic analysis and examination of the fossil record. Both methods indicate that the evolution of an aquatic lifestyle …

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Influenza D Virus M2 Protein Exhibits Ion Channel Activity In Xenopus Laevis Oocytes, Evan Daniel Kesinger Apr 2018

Influenza D Virus M2 Protein Exhibits Ion Channel Activity In Xenopus Laevis Oocytes, Evan Daniel Kesinger

School of Biological Sciences: Dissertations, Theses, and Student Research

The Influenza virus M2 ion channel has good potential as a target for antiviral drugs, as the channel is necessary for viral replication. M2 of Influenza A and B viruses has beenstudied extensively, and is understood to function as a proton channel. Antiviral drugs like amantadine and rimantadine have been used to block the function of Influenza A virus M2. Influenza C virus M2 has also been researched and is understood to act as a chloride ion channel. However, the M2 channel of Influenza D virus (DM2) has been studied very little, and the activity and mechanism of the channel …

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Factors Affecting The Parasitism Of Gregarine Species In Grasshoppers In Western Nebraska, Alexandra Creigh, Kristin Mclarty, Scott Lyell Gardner Mar 2018

Factors Affecting The Parasitism Of Gregarine Species In Grasshoppers In Western Nebraska, Alexandra Creigh, Kristin Mclarty, Scott Lyell Gardner

Honors Program: Senior Projects (Public)

We conducted a survey of the species of parasites found in grasshoppers around the area of Dunwoody’s Pond to investigate whether there were any species specific parasitic relationships occurring there. We collected grasshoppers from several areas around Dunwoody’s Pond totaling 15 species including Melanoplus bivittatus (Say 1825) , Melanoplus sanguinipes (Fabricius, 1798) , Melanoplus differentialis (Thomas 1865), and Melanoplus femurrubrum (De Geer 1773), along with others (Seymour et al., 2009) and compared the parasites found in them. This study is similar to one conducted in South America by Lloyd in 1951, and we hoped to find connections between species to …

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Olfactory Learning Capabilities Of Paraphrynus Laevifrons, John Perez Mar 2018

Olfactory Learning Capabilities Of Paraphrynus Laevifrons, John Perez

Honors Program: Senior Projects (Public)

Amblypygids, a species of nocturnal arachnids from the tropics and subtropics are incredibly intelligent and are able to not only navigate through difficult tropical terrain but also, it is believed, possess olfactory learning capabilities that aid in navigation and recollection of environments. It is hypothesized that through sensitive olfactory receptors on their antenniform legs and highly developed mushroom bodies, Amblypygi can not only learn smells but also learn to associate smells with certain stimuli such as a crevice to take refuge in. To test this hypothesis, Paraphrynus laevifrons, a species of amplypygid was subjected to four different learning treatment groups …

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Genetic Diversity And Distinctness Of Wild Nebraska Hops And Hop Cultivars (Humulus Lupulus L.), Megan Franklin Mar 2018

Genetic Diversity And Distinctness Of Wild Nebraska Hops And Hop Cultivars (Humulus Lupulus L.), Megan Franklin

Honors Program: Senior Projects (Public)

Background Commercial hop (Humulus lupulus) cultivars that are being grown in the Midwest are not performing as successfully as when they are grown in the Pacific Northwest, the region to which they are adapted. To increase adaptation to the Midwest environment, one strategy is to draw from the genetic pool of wild native Midwest hops, which have developed genes that allow them to grow successfully in this environment. Wild hop plants that are genetically distinct from commercial cultivars are likely to have more adaptations, such as pest/disease resistance and drought tolerance, which can be bred into commercial lines. The …

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Temperature Drives Epidemics In A Zooplankton-Fungus Disease System: A Trait-Driven Approach Points To Transmission Via Host Foraging, Marta S. Shocket, Alexander T. Strauss, Jessica L. Hite, Maja Šljivar, David J. Civitello, Meghan A. Duffy, Carla E. Cáceres, Spencer R. Hall Feb 2018

Temperature Drives Epidemics In A Zooplankton-Fungus Disease System: A Trait-Driven Approach Points To Transmission Via Host Foraging, Marta S. Shocket, Alexander T. Strauss, Jessica L. Hite, Maja Šljivar, David J. Civitello, Meghan A. Duffy, Carla E. Cáceres, Spencer R. Hall

School of Biological Sciences: Faculty Publications

Climatic warming will likely have idiosyncratic impacts on infectious diseases, causing some to increase while others decrease or shift geographically. A mechanistic framework could better predict these different temperature-disease outcomes. However, such a framework remains challenging to develop, due to the nonlinear and (sometimes) opposing thermal responses of different host and parasite traits and due to the difficulty of validating model predictions with observations and experiments. We address these challenges in a zooplanktonfungus (Daphnia dentifera–Metschnikowia bicuspidata) system. We test the hypothesis that warmer temperatures promote disease spread and produce larger epidemics. In lakes, epidemics that start earlier and warmer in …

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Effects Of Elevated Co2, Increased Nitrogen Deposition, And Plant Diversity On Aboveground Litter And Root Decomposition, Xiaoan Zuo, Johannes Knops Feb 2018

Effects Of Elevated Co2, Increased Nitrogen Deposition, And Plant Diversity On Aboveground Litter And Root Decomposition, Xiaoan Zuo, Johannes Knops

School of Biological Sciences: Faculty Publications

Global change-induced litter decomposition strongly affects the carbon (C) and nitrogen (N) dynamics in grassland ecosystems. However, few studies show the interactive effects of global change factors on litter and root decomposition. We conducted a four-year grassland field experiment to examine the quality and decomposition of litter and root in a three-factorial experiment with elevated CO2, increased N deposition, and plant species richness. We found that elevated CO2 decreased the litter N content and root lignin content. N addition increased the root N content and decreased the litter lignin content. Increasing plant richness decreased the N and …

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Eight-Legged Encounters—Arachnids, Volunteers, And Art Help To Bridge The Gap Between Informal And Formal Science Learning, Eileen Hebets, Melissa Welch-Lazoritz, Pawl Tisdale, Patricia Wonch Hill Feb 2018

Eight-Legged Encounters—Arachnids, Volunteers, And Art Help To Bridge The Gap Between Informal And Formal Science Learning, Eileen Hebets, Melissa Welch-Lazoritz, Pawl Tisdale, Patricia Wonch Hill

Eileen Hebets Publications

Increased integration and synergy between formal and informal learning environments is proposed to provide multiple benefits to science learners. In an effort to better bridge these two learning contexts, we developed an educational model that employs the charismatic nature of arachnids to engage the public of all ages in science learning; learning that aligns with the Next Generation Science Standards (NGSS Disciplinary Core Ideas associated with Biodiversity and Evolution). We created, implemented, and evaluated a family-focused, interactive science event—Eight-Legged Encounters (ELE)—which encompasses more than twenty modular activities. Volunteers facilitated participant involvement at each activity station and original …

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Feeding Immunity: Physiological And Behavioral Responses To Infection And Resource Limitation, Sarah A. Budischak, Christina B. Hansen, Quentin Caudron, Romain Garnier, Tyler R. Kartzinel, István Pelczer, Clayton E. Cressler, Anieke Van Leeuwen, Andrea L. Graham Jan 2018

Feeding Immunity: Physiological And Behavioral Responses To Infection And Resource Limitation, Sarah A. Budischak, Christina B. Hansen, Quentin Caudron, Romain Garnier, Tyler R. Kartzinel, István Pelczer, Clayton E. Cressler, Anieke Van Leeuwen, Andrea L. Graham

School of Biological Sciences: Faculty Publications

Resources are a core currency of species interactions and ecology in general (e.g., think of food webs or competition). Within parasite-infected hosts, resources are divided among the competing demands of host immunity and growth as well as parasite reproduction and growth. Effects of resources on immune responses are increasingly understood at the cellular level (e.g., metabolic predictors of effector function), but there has been limited consideration of how these effects scale up to affect individual energetic regimes (e.g., allocation trade-offs), susceptibility to infection, and feeding behavior (e.g., responses to local resource quality and quantity). We experimentally rewilded laboratory mice (strain …

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Convergent Body Size Evolution Of Crocodyliformes Upon Entering The Aquatic Realm, William Gearty, Jonathan Payne Jan 2018

Convergent Body Size Evolution Of Crocodyliformes Upon Entering The Aquatic Realm, William Gearty, Jonathan Payne

School of Biological Sciences: Presentations

Twenty-four species of crocodile populate the globe today, but this richness represents a minute fraction of the diversity and disparity of Crocodyliformes since their origin early in the Triassic. Across this clade, three major diversification events into the aquatic realm have occurred. Aquatic and terrestrial habitats impose differing selective pressures on body size. However, previous research on this topic in Crocodyliformes remains qualitative in nature. In this study, our goal was to quantify the influence of habitat (terrestrial versus aquatic) on the evolution of body size in Crocodyliformes. We find a history of repeated body size increase and convergence following …

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The Development And Application Of Bioinformatics Core Competencies To Improve Bioinformatics Training And Education, Nicola Mulder, Russell Schwartz, Michelle D. Brazas, Cath Brooksbank, Bruno Gaeta, Sarah L. Morgan, Mark A. Pauley, Anne Rosenwald, Gabriella Rustici, Michael Sierk, Tandy Warnow, Lonnie Welch Jan 2018

The Development And Application Of Bioinformatics Core Competencies To Improve Bioinformatics Training And Education, Nicola Mulder, Russell Schwartz, Michelle D. Brazas, Cath Brooksbank, Bruno Gaeta, Sarah L. Morgan, Mark A. Pauley, Anne Rosenwald, Gabriella Rustici, Michael Sierk, Tandy Warnow, Lonnie Welch

School of Biological Sciences: Faculty Publications

Bioinformatics is recognized as part of the essential knowledge base of numerous career paths in biomedical research and healthcare. However, there is little agreement in the field over what that knowledge entails or how best to provide it. These disagreements are compounded by the wide range of populations in need of bioinformatics training, with divergent prior backgrounds and intended application areas. The Curriculum Task Force of the International Society of Computational Biology (ISCB) Education Committee has sought to provide a framework for training needs and curricula in terms of a set of bioinformatics core competencies that cut across many user …

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Gene Turnover And Diversification Of The Α- And Β- Globin Gene Families In Sauropsid Vertebrates, Federico G. Hoffmann, Michael W. Vandewege, Jay F. Storz, Juan C. Opazo Jan 2018

Gene Turnover And Diversification Of The Α- And Β- Globin Gene Families In Sauropsid Vertebrates, Federico G. Hoffmann, Michael W. Vandewege, Jay F. Storz, Juan C. Opazo

School of Biological Sciences: Faculty Publications

The genes that encode the α- and β-chain subunits of vertebrate hemoglobin have served as a model system for elucidating general principles of gene family evolution, but little is known about patterns of evolution in amniotes other than mammals and birds. Here,we report a comparative genomic analysis of the α- and β-globin gene clusters in sauropsids (archosaurs and nonavian reptiles). The objectives were to characterize changes in the size and membership composition of the α- and β-globin gene families within and among the major sauropsid lineages, to reconstruct the evolutionary history of the sauropsid α- and β-globin genes, to resolve …

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Influenza D Virus M2 Protein Exhibits Ion Channel Activity In Xenopus Laevis Oocytes, Evan Kesinger, Jianing Liu, Aaron Jensen, Catherine P. Chia, Andrew Demers, Hideaki Moriyama Jan 2018

Influenza D Virus M2 Protein Exhibits Ion Channel Activity In Xenopus Laevis Oocytes, Evan Kesinger, Jianing Liu, Aaron Jensen, Catherine P. Chia, Andrew Demers, Hideaki Moriyama

School of Biological Sciences: Faculty Publications

A new type of influenza virus, known as type D, has recently been identified in cattle and pigs. Influenza D virus infection in cattle is typically asymptomatic; however, its infection in swine can result in clinical disease. Swine can also be infected with all other types of influenza viruses, namely A, B, and C. Consequently, swine can serve as a "mixing vessel" for highly pathogenic influenza viruses, including those with zoonotic potential. Currently, the only antiviral drug available targets influenza M2 protein ion channel is not completely effective. Thus, it is necessary to develop an M2 ion channel blocker capable …

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Rnai Doxxes Segregation Distorters On The X, Justin P. Blumenstiel, Colin D. Meiklejohn Jan 2018

Rnai Doxxes Segregation Distorters On The X, Justin P. Blumenstiel, Colin D. Meiklejohn

School of Biological Sciences: Faculty Publications

Species with chromosomal sex determination are susceptible to an evolutionary tug-of-war over sex chromosome segregation. RNA silencing has been proposed to play a role in this intragenomic conflict. Reporting in Developmental Cell, Lin et al. (2018) demonstrate that RNA interference is key to this conflict as a genome defender. ... This work from Lin et al. (2018) provides exciting new evidence that RNA silencing may play a special role as a genome defense against native genes gone rogue. It will be interesting to see how these evolutionary games mediated by RNA silencing influence germline evolution and the dynamics of speciation.

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Student, Instructor, And Observer Agreement Regarding Frequencies Of Scientific Teaching Practices Using The Measurement Instrument For Scientific Teaching-Observable (Misto), Mary F. Durham, Jennifer Knight, Emily K. Bremers, Jameson D. Defreece, Alex R. Paine, Brian A. Couch Jan 2018

Student, Instructor, And Observer Agreement Regarding Frequencies Of Scientific Teaching Practices Using The Measurement Instrument For Scientific Teaching-Observable (Misto), Mary F. Durham, Jennifer Knight, Emily K. Bremers, Jameson D. Defreece, Alex R. Paine, Brian A. Couch

School of Biological Sciences: Faculty Publications

Background: The Scientific Teaching (ST) pedagogical framework encompasses many of the best practices recommended in the literature and highlighted in national reports. Understanding the growth and impact of ST requires instruments to accurately measure the extent to which practitioners implement ST in their courses. Researchers have typically relied on students, instructors, or observers to document course teaching practices, but it remains unclear whether and how these perspectives differ from each other. To address this issue, we modified our previously published instrument to generate the Measurement Instrument for Scientific Teaching-Observable (MISTO), which can be completed by students, instructors, and observers, and …

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What Types Of Instructional Shifts Do Students Experience? Investigating Active Learning In Science, Technology, Engineering, And Math Classes Across Key Transition Points From Middle School To The University Level, Kenneth Akiha, Emilie Brigham, Brain A. Couch, Justin Lewin, Marilyne Stains, Mackenzie R. Stetzer, Erin L. Vinson, Michelle K. Smith Jan 2018

What Types Of Instructional Shifts Do Students Experience? Investigating Active Learning In Science, Technology, Engineering, And Math Classes Across Key Transition Points From Middle School To The University Level, Kenneth Akiha, Emilie Brigham, Brain A. Couch, Justin Lewin, Marilyne Stains, Mackenzie R. Stetzer, Erin L. Vinson, Michelle K. Smith

School of Biological Sciences: Faculty Publications

Despite the need for a strong Science, Technology, Engineering, and Math (STEM) workforce, there is a high attrition rate for students who intend to complete undergraduate majors in these disciplines. Students who leave STEM degree programs often cite uninspiring instruction in introductory courses, including traditional lecturing, as a reason. While undergraduate courses play a critical role in STEM retention, little is understood about the instructional transitions students encounter upon moving from secondary to post-secondary STEM courses. This study compares classroom observation data collected using the Classroom Observation Protocol for Undergraduate STEM from over 450 middle school, high school, introductory-level university, …

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Binary-State Speciation And Extinction Method Is Conditionally Robust To Realistic Violations Of Its Assumptions, Andrew G. Simpson, Peter J. Wagner, Scott L. Wing, Charles B. Fenster Jan 2018

Binary-State Speciation And Extinction Method Is Conditionally Robust To Realistic Violations Of Its Assumptions, Andrew G. Simpson, Peter J. Wagner, Scott L. Wing, Charles B. Fenster

School of Biological Sciences: Faculty Publications

Phylogenetic comparative methods allow us to test evolutionary hypotheses without the benefit of an extensive fossil record. These methods, however, make simplifying assumptions, among them that clades are always increasing or stable in diversity, an assumption we know to be false. This study simulates hypothetical clades to test whether the Binary State Speciation and Extinction (BiSSE) method can be used to correctly detect relative differences in diversification rate between ancestral and derived character states even as net diversification rates are declining overall. We simulate clades with declining but positive diversification rates, as well those in which speciation rates decline below …

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Evidence For Trait-Based Dominance In Occupancy Among Fossil Taxa And The Decoupling Of Macroecological And Macroevolutionary Success, Peter Wagner, Roy E. Plotnick, S. Kathleen Lyons Jan 2018

Evidence For Trait-Based Dominance In Occupancy Among Fossil Taxa And The Decoupling Of Macroecological And Macroevolutionary Success, Peter Wagner, Roy E. Plotnick, S. Kathleen Lyons

School of Biological Sciences: Faculty Publications

Biological systems provide examples of differential success among taxa, from ecosystems with a few dominant species (ecological success) to clades that possess far more species than sister clades (macroevolutionary success). Macroecological success, the occupation by a species or clade of an unusually high number of areas, has received less attention. If macroecological success reflects heritable traits, then successful species should be related. Genera composed of species possessing those traits should occupy more areas than genera with comparable species richness that lack such traits. Alternatively, if macroecological success reflects autapomorphic traits, then generic occupancy should be a by-product of species richness …

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Energy Demand And The Context-Dependent Effects Of Genetic Interactions Underlying Metabolism, Luke A. Hoekstra, Cole R. Julick, Katelyn M. Mika, Kristi L. Montooth Jan 2018

Energy Demand And The Context-Dependent Effects Of Genetic Interactions Underlying Metabolism, Luke A. Hoekstra, Cole R. Julick, Katelyn M. Mika, Kristi L. Montooth

School of Biological Sciences: Faculty Publications

Genetic effects are often context dependent, with the same genotype differentially affecting phenotypes across environments, life stages, and sexes.We used an environmental manipulation designed to increase energy demand during development to investigate energy demand as a general physiological explanation for context-dependent effects of mutations, particularly for those mutations that affect metabolism. We found that increasing the photoperiod during which Drosophila larvae are active during development phenocopies a temperature-dependent developmental delay in a mitochondrial-nuclear genotype with disrupted metabolism. This result indicates that the context-dependent fitness effects of this genotype are not specific to the effects of temperature and may generally result …

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Evolutionary Origins Of Vocal Mimicry In Songbirds, Maria Goller, Daizaburo Shizuka Jan 2018

Evolutionary Origins Of Vocal Mimicry In Songbirds, Maria Goller, Daizaburo Shizuka

School of Biological Sciences: Faculty Publications

Vocal learning is an important behavior in oscines (songbirds). Some songbird species learn heterospecific sounds as well as conspecific vocalizations. The emergence of vocal mimicry is necessarily tied to the evolution of vocal learning, as mimicry requires the ability to acquire sounds through learning. As such, tracking the evolutionary origins of vocal mimicry may provide insights into the causes of variation in song learning programs among songbirds. We compiled a database of known vocal mimics that comprised 339 species from 43 families. We then traced the evolutionary history of vocal mimicry across the avian phylogeny using ancestral trait reconstruction on …

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