Biology Commons^™

Methanogens, Plausible Extraterrestrial Life Forms On Mars, And Their Tolerance To Increasing Concentrations Of Illite Clay, Chandler Kern

Biological Sciences Undergraduate Honors Theses

Methanogens, some of Earth’s most primitive prokaryotic organisms, are candidates for possible life forms capable of inhabiting Mars. Specifically, four different species (Methanobacterium formicicum, Methanococcus maripaludis, Methanosarcina barkeri, Methanothermobacter wolfeii) were analyzed for their tolerance to the presence of illite clay. Illite is a crystalline mineral that has been identified from regions of Mars’s surface. Results indicated that all four species grew with some success in the illite at different concentrations. This experimentation with methanogens’ abilities to survive and reproduce in the presence of illite allows for a more accurate understanding of the potential capability of microbial …

Diversification Across A Dynamic Landscape: Phylogeography And Riverscape Genetics Of Speckled Dace (Rhinichthys Osculus) In Western North America, Steven Michael Mussmann

Graduate Theses and Dissertations

Evolution occurs at various spatial and temporal scales. For example, speciation may occur in historic time, whereas localized adaptation is more contemporary. Each is required to identify and manage biodiversity. However, the relative abundance of Speckled Dace (Rhinichthys osculus), a small cyprinid fish in western North America (WNA) and the study species for this dissertation, establishes it an atypical conservation target, particularly when contrasted with the profusion of narrowly endemic forms it displays. Yet, the juxtaposition of ubiquity versus endemism provides an ideal model against which to test hypotheses regarding the geomorphic evolution of WNA. More specifically, it also allows …

Crispr Knockouts Reveal An Endogenous Role For Ancient Neuropeptides In Regulating Developmental Timing In A Sea Anemone, Nagayasu Nakanishi, Mark Q. Martindale

Biological Sciences Faculty Publications and Presentations

Neuropeptides are evolutionarily ancient peptide hormones of the nervous and neuroendocrine systems, and are thought to have regulated metamorphosis in early animal ancestors. In particular, the deeply conserved Wamide family of neuropeptides—shared across Bilateria (e.g. insects and worms) and its sister group Cnidaria (e.g. jellyfishes and corals)—has been implicated in mediating life-cycle transitions, yet their endogenous roles remain poorly understood. By using CRISPR-Cas9-mediated reverse genetics, we show that cnidarian Wamide—referred to as GLWamide—regulates the timing of life cycle transition in the sea anemone cnidarian Nematostella vectensis. We find that mutant planula larvae lacking GLWamides transform into morphologically normal polyps …

Functional Polymorphisms Of Alcohol Metabolism Genes And Their Protection Against Alcoholism Via Gene Therapy: A Systematic Review, Olivia Tzeng

Psychological Science Undergraduate Honors Theses

Around 45% of East Asians are unable to fully metabolize ethanol due to functional

polymorphisms of alcohol metabolism genes, specifically alcohol dehydrogenase (ADH) and aldehyde dehydrogenase (ALDH). These individuals display high levels of toxic blood acetaldehyde when consuming alcohol, causing symptoms such as tachycardia, vomiting, and flushing. The studies included in this review examine how functional polymorphisms of ADH and ALDH protect against alcoholism in addition to how polymorphisms can be utilized as protection against alcoholism via gene therapy. The studies included found that carriers of the ADH and ALDH polymorphisms were 66 to 99% genetically protected against alcoholism. Through …

Phylogeny Of The Orangethroat Darter (Etheostoma Spectabile) Species Complex In The Ozark Highlands Of Arkansas, Mckenna George

Animal Science Undergraduate Honors Theses

Darters are small, benthic fishes that live in freshwater rivers and streams and belong to the family Percidae. Pleistocene glaciations fragmented many darter species, resulting in speciation, but new species are often hard to detect if they are morphologically identical to pre-existing species. Intraspecific hybridization and resulting introgression, which occur frequently in glaciated areas, further complicate identification by introducing heterospecific genomes into mitochondrial DNA, making it difficult to accurately resolve phylogenetic relationships. The results of Bossu and Near’s 2009 study highlight this issue, showing a large degree of incongruence between mitochondrial and nuclear gene trees.

This study analyzed samples from …

In Vivo Structure-Function Analysis Of Drosophila Robo1, An Axon Guidance Receptor Critical For Midline Repulsive Signaling In The Embryonic Central Nervous System, Haley Brown

Graduate Theses and Dissertations

The repellant ligand Slit and its Roundabout (Robo) family receptors regulate many aspects of axon guidance in bilaterians, including midline crossing of axons during development of the embryonic CNS. Slit proteins are produced by midline cells and signal through Robo receptors expressed on the surface of axonal growth cones to repel axons from the midline. Disruption of Slit-Robo signaling causes ectopic midline crossing phenotypes in the CNS of a broad range of animals, including insects and vertebrates.

Drosophila Robo1 has a conserved ectodomain structure of five immunoglobulin-like (Ig) domains plus three fibronectin (FN) repeats. By utilizing a genomic rescue construct …

Vertebrate Natural History Notes From Arkansas, 2018, Renn Tumlison, D. Blake Sasse, Henry W. Robison, Matt B. Connior, Chris T. Mcallister, Kelly Jobe, Matthew Anderson

Journal of the Arkansas Academy of Science

Because meaningful observations of natural history are not always part of larger studies, important pieces of information often are unreported. Small details, however, can fill gaps in understanding and lead to interesting questions about ecological relationships or environmental change. We have compiled recent important observations of distribution, deformities, and foods of various vertebrates, observations of winter activity of a woodchuck (Marmota monax) and winter torpor of a hoary bat (Lasiurus cinereus), and also report a very unusual case of bilateral gynandromorphism in a Cardinal (Cardinalis cardinalis). These unique observations continue to add immensely to …

Gene Flow And Genetic Structure Of Two Of Arkansas’S Rarest Darter Species (Teleostei: Percidae), The Arkansas Darter, Etheostoma Cragini, And The Least Darter, E. Microperca, Justin Baker, Brian Wagner, Robert Wood

Journal of the Arkansas Academy of Science

Distinguishing the effects of naturally caused historical fragmentation from those of contemporary landscape modification is critically important to understanding the consequences of human influences on patterns of gene flow and population dynamics. Nonetheless, relatively few recent studies focusing on this issue have dealt with species that showed evidence of historical fragmentation. In the current study, we disentangled the effects of fragmentation operating over separate timescales on two darter species, Etheostoma cragini and E. microperca, from the Ozark Highlands. Formerly more wide-spread within this region in Arkansas, these species now occur only in highly isolated habitats (i.e., spring-runs). …

Distribution Of Dracunculus Sp. Infection In River Otters (Lontra Canadensis) In Arkansas, Renn Tumlison, Allison Surf, Heather May

Journal of the Arkansas Academy of Science

No abstract provided.

New Records Of The American Badger (Taxidea Taxus) In Arkansas, With An Updated Distribution Map, Renn Tumlison, D. Blake Sasse

Journal of the Arkansas Academy of Science

No abstract provided.

Parasites Of The Spotted Sucker, Minytrema Melanops (Cypriniformes: Catostomidae) From Arkansas And Oklahoma, Chris T. Mcallister, Donald G. Cloutman, Anindo Choudhury, Tomas Scholz, Stanley E. Trauth, Thomas J. Fayton, Henry W. Robison

Journal of the Arkansas Academy of Science

During October 2015, March and April 2016 and again between March and April 2017, 15 Spotted Sucker (Minytrema melanops) were collected from sites in the Ouachita (n = 5), Red (n = 1), and St. Francis (n = 5) river drainages, Arkansas, and the Arkansas River drainage, Oklahoma (n = 4), and examined for protozoan and metazoan parasites. Found were Calyptospora sp., Myxobolus sp., Pseudomurraytrema alabarrum, Biacetabulum banghami, Penarchigetes oklensis, and Acanthocephalus sp. New host and distributional records are documented for these parasites.

The Bovine Rumen Microbiome Revealed By Different Fractions Of Rumen Contents, Ashlee L. Breakstone

Animal Science Undergraduate Honors Theses

The bovine rumen microbiota is very important in terms of animal functionality and digestion. The fermentative capability of the rumen provides means for the digestion of complex plant material that is indigestible by humans. The rumen is the working ground for millions of microorganisms, primarily bacteria, to digest and ferment feed into volatile fatty acids and bacterial protein for the animal’s energy and protein needs, respectively. Of significant importance is the rumen microbiomes ability to conform to certain factors such as genetics, feed, or geographic location. These changes can have a direct measure on animal growth, health, and performance. The …

The Effects Of Mesopredator Presence On Population Abundances Of Eastern Wild Turkey (Meleagris Gallopavo Silvestris), James Mcmichen

Biological Sciences Undergraduate Honors Theses

The eastern wild turkey (Meleagris gallopavo silvestris) has been an important game bird for the cultures and livelihood of peoples living in North America for centuries. Understanding how predation pressures affect wild turkey behavior can help us better manage turkey populations. I looked at three mesopredators: raccoons (Procyon lotor), gray foxes (Urocyon cinereoargenteus), and coyotes (Canis latrans) to see how they influence turkey presence at the White Rock Ecosystem Recreational Area, northwest Arkansas. I employed the use of 16 Moultrie trail cameras to ennumerate wild turkey and mesopredators at 29 sites. I deployed the cameras during late winter and early …

Thylakoid Protein Targeting/Insertion By A Signal Recognition Particle In Chloroplasts, Priyanka Sharma

Graduate Theses and Dissertations

Protein targeting is a fundamental cellular process that directs proteins from their site of synthesis to the site where they function. The signal recognition particle (SRP) dependent targeting pathway is conserved in both eukaryotes and prokaryotes where it co-translationally targets polypeptide chains emerging from ribosomes to the endoplasmic reticulum (eukaryotes) or cytoplasmic membrane (prokaryotes). A structurally unique form of SRP is found in chloroplasts where it functions to post-translationally bind and target a subset of integral thylakoid membrane proteins, the light harvesting chlorophyll binding proteins (LHCPs). Mature LHCPs bind chlorophyll a/b and function in photosynthetic light capture. Like many other …

The Fleas (Arthropoda: Insecta: Siphonaptera) Of Arkansas, Chris T. Mcallister, Lance A. Durden, Henry W. Robison, Matthew B. Connior

Journal of the Arkansas Academy of Science

Fleas (Insecta: Siphonaptera) are important ectoparasites of cats, dogs, other mammals (including humans), and birds, and are an important component of the biota of North America. In addition, they can be nuisance biters and serve as vectors or intermediate hosts of several flea-borne disease agents and parasites that negatively affect mammals and birds. In Arkansas, there have been no recent comprehensive summaries of fleas in the last 45+ years. Here, we provide a summary of the 29 species of fleas within 7 families that have been recorded from the state, update their taxonomy, and note their medical and veterinary importance.

Local Scale Comparisons Of Avian And Woody Vegetation Communities Within Four Arkansas State Parks, Bennett P. Grooms, Rachael E. Urbanek

Journal of the Arkansas Academy of Science

Measuring the spatial distribution of biotic communities can provide useful data to wildlife managers on how and why species assemblages differ across a landscape. During 18 May – 7 August 2015, we conducted avian point counts and collected vegetation data in nested subplots at 4 Arkansas state parks. We then used a series of one-way ANOVAs and Kruskal-Wallis tests to examine differences in species richness, Simpson’s evenness, Simpson’s diversity, and Bray-Curtis similarity across the 4 parks. Mount Magazine State Park had the lowest avian evenness (F_3,22 = 9.57 P = 0.003) and diversity (F_3,22 = 17.8 …

Distribution, Habitat, And Life History Aspects Of The Shrimp Crayfish, Faxonius Lancifer (Hagen) (Decapoda: Cambaridae) In Arkansas, Henry W. Robison, Chris T. Mcallister, Renn Tumlison

Journal of the Arkansas Academy of Science

The Shrimp Crayfish, Faxonius (formerly Orconectes) lancifer (Hagen) is an uncommon, although widespread, crayfish in Arkansas. This species is herein documented from 19 counties of the Gulf Coastal Plain physiographic region. Between 1974 and 2017, we made 344 collections throughout the 75 counties of Arkansas, of which 22 (6%) yielded 163 specimens of F. lancifer. Thus, from these collections, plus 10 unpublished collections of Reimer (1963), and one collection from G.L. Harp, a total of 34 collections of F. lancifer are now known from the state. Faxonius lancifer ranged from uncommon (1 specimen) to locally abundant …

The Fishes Of Chadron Creek, Dawes County, Nebraska, Chris T. Mcallister, Michael B. Leite, Renn Tumlison

Journal of the Arkansas Academy of Science

This first modern comprehensive survey of fishes collected from Chadron Creek, Dawes County, Nebraska, documents collections made with a small seine and backpack electrofisher during November 2007 and February and March 2008. Chadron Creek’s fish community is of low diversity. The total of 3 collections at each of 9 stations along the length of Chadron Creek resulted in 254 individual fishes, which represented only 7 species within 4 families. Water quality parameters, including dissolved oxygen, pH, conductivity, total dissolved solids, temperature and fecal coliform counts indicate that Chadron Creek is a healthy stream capable of supporting a greater diversity of …

Sun-Bathing By Greater Roadrunners – A Neglected Aspect Of Their Range Extension, Kimberly G. Smith, Joseph C. Neal, J. C. Reynolds

Journal of the Arkansas Academy of Science

No abstract provided.

Literature Record Checklist Of True Bugs (Hemiptera) For Arkansas, U.S.A., As Of 2018., Stephen W. Chordas Iii

Journal of the Arkansas Academy of Science

No abstract provided.

An Annotated Checklist Of The Crayfishes (Decapoda: Cambaridae) Of Arkansas, Henry W. Robison, Keith A. Crandall, Chris T. Mcallister

Journal of the Arkansas Academy of Science

Prior to the present study, 56 species with 3 additional subspecies for a total of 59 different taxa of crayfishes were recognized from Arkansas. We add a single species (Carmel Crayfish, Fallicambarus schusteri) to that list, subtract a documented synonym (Procambarus ferrugenius = Procambarus liberorum), update the classification to better reflect recent phylogenetic insights, and provide an updated annotated checklist of the 59 crayfish taxa of presently known from the state. There are 8 endemic species in Arkansas, including the Bayou Bodcau Crayfish (Bouchardina robisoni), Boston Mountains Crayfish (Cambarus causeyi), Hell Creek …

Leech Parasitism Of The Gulf Coast Box Turtle, Terrapene Carolina Major (Testudines:Emydidae) In Mississippi, Usa, Dennis J. Richardson, C. I. Hammond, W. E. Moser, A. J. Heaton, C. T. Mcallister

Journal of the Arkansas Academy of Science

Ten leeches were collected from a Gulf Coast box turtle, Terrapene carolina major, found crossing a road in Gulfport, Harrison County, Mississippi, USA. Eight of the leeches were identified as Placobdella multilineata and 2 were identified as Helobdella europaea. This represents the second vouchered report of leeches from a box turtle. Helobdella europaea is reported for the first time associated with a turtle and for the second time from the New World.

Coccidian Parasites (Apicomplexa: Eimeriidae) Of Arkansas Herpetofauna: A Summary With Two New State Records, Chris T. Mcallister, Dagmara Motriuk-Smith, Robert S. Seville, Matthew B. Connior, Stanley E. Trauth, Henry W. Robison

Journal of the Arkansas Academy of Science

Coccidian parasites (Protista: Apicomplexa: Eimeriidae) commonly infect reptiles, and to a lesser degree, amphibians. The family Eimeriidae includes at least 18 genera and 3 of them, Caryospora, Eimeria, and Isospora have been reported previously from various Arkansas herpetofauna. Over the past 3 decades, our community collaborative effort has provided a great deal of information on these parasites found in amphibians and reptiles of Arkansas. Here, we provide a summary of all coccidians reported from herptiles of the state as well as provide 2 new state records for coccidians from non-native Mediterranean geckos, Hemidactylus turcicus.

Relationships Between Nutrients, Periphyton Abundance, And Benthic Macroinvertebrate Scrapers In Ozark Highland Streams, Harrison Smith

Biological Sciences Undergraduate Honors Theses

We collected samples from seven Arkansas streams during the months of August 2014 and February 2015 with the objective of determining possible relationships between nutrients, periphyton abundance and benthic macroinvertebrates. We hypothesized that periphyton would be positively associated with nutrients, and that increases in periphyton biomass would increase the abundance and diversity of benthic scraper families. Samples were collected from three transects at each site. The periphyton was analyzed for carbon, nitrogen, phosphorus, and ash free dry mass and Chl-a content. Macroinvertebrates families belonging to the feeding group of grazers/scrapers were compared with water column and periphyton nutrient concentrations, as …

Stream Benthic Algal Relationships With Multi-Metric Indices Of Sensitivity, Exposure, And Vulnerability To Watershed Land Use Change, With An Emphasis On Unconventional Natural Gas Development, Hannah J. Verkamp

Biological Sciences Undergraduate Honors Theses

Unconventional natural gas (UNG) is harvested using a unique fossil fuel extraction method that uses horizontal drilling and hydraulic fracturing techniques. The combined methods have expanded the industry both nationally and globally, and development has the ability to transform landscapes and impact freshwater resources. Natural gas wells are often near streams, yet substantial knowledge gaps remain as to how and the extent to which development affects surface waters. Stream algal biomass can respond positively to anthropogenic stressors associated with different types of land use, including agriculture. Benthic algal biomass can also positively correlate with UNG well density and proximity to …

Exploring The Mechanisms Of Action Of Antifungal Peptides Using Saccharomyces Cerevisiae., Michelle L. Mason

Biological Sciences Undergraduate Honors Theses

Candida albicans is a normal inhabitant of the skin and mucosal membranes of humans, however, in individuals with depressed immune systems or disrupted cutaneous flora, Candida can overgrow and cause serious infection. Candida infection is the fourth leading cause of nosocomial infection in the United States. These infections are often associated with longer hospital stays and higher mortality. Current drug therapies for this infection are largely ineffective due to the increased drug resistance of Candida species, and for some therapeutics, high levels of drug toxicity to humans. Histatin 5 is a naturally occurring salivary peptide that has strong antifungal properties. …

The Effect Of Hypertonicity On Glucose Regulation In Healthy Adults, Alison L. Schroeder

Biological Sciences Undergraduate Honors Theses

Impaired glucose tolerance is the key defining characteristic of diabetes, a condition which affects nearly 30% of Americans. Hydration status and the physiological effects of poor hydration have been linked to compromised glucose tolerance in animal models, but have not been thoroughly investigated in humans. PURPOSE: The purpose of this investigation was to observe the effect of altered hydration status on a healthy male adult’s response to an oral glucose tolerance test (OGTT). METHODS: Four healthy adult men (28.4±1 y, 23.6±1.2 kg/m2, HbA1C 5.6±0.2%, non-smoking, non-athletes) participated. Subjects took OGTT’s in both a hypohydrated and euhydrated state. The euhydrated state …

Damsels In Distress: A Study Of The Effect Of Temperature On Damselfly Competitive Interactions, Madison Pitts

Biological Sciences Undergraduate Honors Theses

Temperature has a fundamental role in shaping numerous physiological aspects of organisms, such as growth rate, that determine an organism's performance. Due to global climate change, temperature is projected to keep increasing. As temperature increases, so does an organism’s growth rate. Also, as competition increases organisms’ growth rate decreases. While studies have examined these factors individually, no experiments have assessed the combined impact of temperature and competition on organism’s growth rates. The experiment we conducted manipulated temperature and density in order to project what will happen as a result of rising temperatures.

Effects Of Arachidin-1 And Arachidin-3 On Human Colon Cancer Cells, Jessica L. Bettis

Biological Sciences Undergraduate Honors Theses

Cancer remains a leading cause of death in the state of Arkansas and across the United States. Recent research found that peanuts consumption has been correlated with a decreased risk of cancer. Although limited research has been conducted, phenolic antioxidant compounds found in peanuts, arachidin-1 and arachidin-3, are correlated to a decrease in human leukemia and lung cancer cell growth. The objective of this study was to evaluate the anti-colon cancer effects of these compounds. Experiments were conducted to examine the effects of purified arachidin-1 and arachidin-3 on Caco-2 cell proliferation. Treatment of cells with arachidin-1 (0, 1, 5, 10µM) …

Response Of Leukocyte Profiles To Corticosterone Manipulation In The Prairie Rattlesnake (Crotalus Viridus), Jill E. Guillette

Biological Sciences Undergraduate Honors Theses

Prior work has shown that when animals are stressed they have altered leukocyte profiles. The use of leukocyte profiles could provide an inexpensive and efficient method for determining stress. Here we present a validation of the use of leukocyte profiles for showing induced stress in Prairie Rattlesnakes (Crotalus viridus). Snakes (N=19) with masses ranging from 682g to 137g were used in a repeated measures design to examine the effect of hormone manipulation on leukocyte profiles. During each trial snakes were dosed with either corticosterone and sesame oil (1.1µg/g) or only sesame oil. Prior to dosing, baseline blood samples …