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Articles 391 - 420 of 1681
Full-Text Articles in Biology
A Minimally Invasive Transfer Method Of Mesenchymal Stem Cells To The Intactperiodontal Ligament Of Rat Teeth: A Preliminary Study, Ni̇sa Gül Amuk, Gokmen Kurt, Melis Kartal Yandim, Aysun Adan, Yusuf Baran
A Minimally Invasive Transfer Method Of Mesenchymal Stem Cells To The Intactperiodontal Ligament Of Rat Teeth: A Preliminary Study, Ni̇sa Gül Amuk, Gokmen Kurt, Melis Kartal Yandim, Aysun Adan, Yusuf Baran
Turkish Journal of Biology
The aim of this study was to introduce a minimally invasive procedure for mesenchymal stem cell (MSC) transfer into the intact periodontal ligament (PDL) of the molar teeth in rats. Ten 12-week-old Wistar albino rats were used for this preliminary study. MSCs were obtained from bones of two animals and were labeled with green fluorescent protein (GFP). Four animals were randomly selected for MSC injection, while 4 animals served as a control group. Samples were prepared for histological analysis, Cox-2 mRNA expression polymerase chain reaction analysis, and fluorescent microscopy evaluation. The number of total cells, number of osteoclastic cells, and …
The Ciliopathy Gene Product Cep290 Is Required For Primary Cilium Formation And Microtubule Network Organization, Eli̇f Nur Firat Karalar
The Ciliopathy Gene Product Cep290 Is Required For Primary Cilium Formation And Microtubule Network Organization, Eli̇f Nur Firat Karalar
Turkish Journal of Biology
The mammalian centrosome/cilium complex is composed of the centrosome, the primary cilium, and the centriolar satellites,which together function in key cellular processes including signaling. Defective assembly, maintenance, and function of the centrosome/cilium complex cause the human genetic diseases known as ciliopathies, which are characterized by a multitude of developmental syndromes including retinal degeneration and kidney cysts. The molecular mechanisms underlying pathogenesis in ciliopathies remain poorly understood, which requires structural and functional characterization of the mutated ciliopathy proteins at the cellular level. To this end, we elucidated the function and regulation of Cep290, which is the most frequently mutated gene in …
Exploring Allosteric Communication In Multiple States Of The Bacterial Ribosome Using Residue Network Analysis, Ayşe Özge Kürkçüoğlu Levi̇tas
Exploring Allosteric Communication In Multiple States Of The Bacterial Ribosome Using Residue Network Analysis, Ayşe Özge Kürkçüoğlu Levi̇tas
Turkish Journal of Biology
Antibiotic resistance is one of the most important problems of our era and hence the discovery of new effective therapeutics is urgent. At this point, studying the allosteric communication pathways in the bacterial ribosome and revealing allosteric sites/residues is critical for designing new inhibitors or repurposing readily approved drugs for this enormous machine. To shed light onto molecular details of the allosteric mechanisms, here we construct residue networks of the bacterial ribosomal complex at four different states of translation by using an effective description of the intermolecular interactions. Centrality analysis of these networks highlights the functional roles of structural components …
In Vitro Anticancer Effect Of Tricyclic Antidepressant Nortriptyline On Multiple Myeloma, Ayşenur Bi̇ber, İpek Zeynep Durusu, Can Özen
In Vitro Anticancer Effect Of Tricyclic Antidepressant Nortriptyline On Multiple Myeloma, Ayşenur Bi̇ber, İpek Zeynep Durusu, Can Özen
Turkish Journal of Biology
Drug repurposing has been proved to be an effective strategy to meet the urgent need for novel anticancer agents for multiple myeloma (MM) treatment. In this work, we aimed to investigate the anticancer effect and mechanism of tricyclic antidepressant nortriptyline (NTP) on the U266 MM cell line. The in vitro inhibitory effect of NTP at various doses and time points was studied. The combination potential of cisplatin-NTP was also investigated. Cell cycle analysis and three flow cytometric apoptosis assays were performed. NTP showed dose- and time-dependent inhibitory effects on the U266 MM cell line. NTP had greater inhibitory effect than …
Long Noncoding Rna Pvt1: Potential Oncogene In The Development Of Acutelymphoblastic Leukemia, Narjes Yazdi, Mohammad Houshmand, Amir Atashi, Alireza Kazemi, Ali Anjam Najmedini, Mahin Nikougoftar Zarif
Long Noncoding Rna Pvt1: Potential Oncogene In The Development Of Acutelymphoblastic Leukemia, Narjes Yazdi, Mohammad Houshmand, Amir Atashi, Alireza Kazemi, Ali Anjam Najmedini, Mahin Nikougoftar Zarif
Turkish Journal of Biology
Emerging evidence shows that long noncoding RNAs (lncRNAs) participate in various cellular processes, and that plasmacytoma variant translocation 1 (PVT1), a newly described oncogene that interacts with various molecules such as p15, p16, NOP2, and c-Myc, is a major contributing factor in tumor development. However, the role of this oncogene remains unknown in the pathogenesis of acute lymphoblastic leukemia (ALL), the most prevalent form of childhood leukemia. In this study, we first measure the expression level of PVT1 in a Jurkat cell line, then small interfering (siRNA) PVT1 is applied to demonstrate the impact of PVT1 knockdown in apoptosis, proliferation, …
In Vitro Evaluation Of The Effects Of Capsaicin On Normal And Cancerouscells Of Human Cartilage, Nagi̇han Helvaci, Sabahatti̇n Cömertpay
In Vitro Evaluation Of The Effects Of Capsaicin On Normal And Cancerouscells Of Human Cartilage, Nagi̇han Helvaci, Sabahatti̇n Cömertpay
Turkish Journal of Biology
Chondrosarcoma is a common form of bone cancer which affects the fibrous connective tissue around a joint. It most commonly develops in legs, arms, shoulder blades, rib cage, and pelvis. Capsaicin is an active bitter compound found in red pepper, the fruit of the species Capsicum annuum, and it has been shown to have a lethal effect on different types of cancer. However, to date, investigation of its effect on human chondrosarcoma cells has remained limited. In the study presented here, we determined IC50 values of capsaicin for chondrosarcoma and chondrocyte cells in both fetal bovine serum (FBS)-containing and FBS-deprived …
Oxidative Stress Upregulates The Transcription Of Genes Involved In Thiaminemetabolism, Burcu Kartal, Ahmet Akçay, Bedi̇a Palabiyik
Oxidative Stress Upregulates The Transcription Of Genes Involved In Thiaminemetabolism, Burcu Kartal, Ahmet Akçay, Bedi̇a Palabiyik
Turkish Journal of Biology
Thiamine is a major vitamin that acts as a cofactor in energy metabolism in all organisms, as well as in lipid and amino acid metabolisms, and is associated with many diseases. It is known that glucose starvation decreases the intracellular thiamine pool while increasing oxidative stress tolerance. Earlier, in whole genome analysis, we detected major differences in the expression of genes related to thiamine pathway against oxidative stress in Schizosaccharomyces pombe. We investigated the effects of oxidative stress and glucose repression to thiamine pathway in S. pombe by comparing some genes encoding key enzymes of each related pathway at the …
Comparative Evaluation Of Nano And Bulk Tin Dioxide Cytotoxicity On Dermal Fibroblasts By Real-Time Impedance-Based And Conventional Methods, Şükran Şeker
Turkish Journal of Biology
In this study, the possible cellular effects of tin dioxide (SnO2) nanoparticles, together with its bulk form, on mouse dermal fibroblasts (DFs) were revealed using in vitro assays. Particle characterizations were carried out with AFM, Braun-Emmet-Teller, and DLS analyses. The cells were treated with nano and bulk SnO2 at concentrations of 0.1, 1, 10, 50, and 100 μg/mL for 6, 24, and 48 h. At the end of the exposure periods, the morphology, viability, particle uptake, and membrane leakage statuses of the cells were evaluated. Furthermore, real-time monitoring of cell responses was performed by using an impedance-based label-free system. Findings …
Cytoprotective Effect Of A Functional Antipollutant Blend Through Reducing B[A] P-Induced Intracellular Oxidative Stress And Uva Exposure, Gi̇zem Örs, Sultan Gülçe İz
Cytoprotective Effect Of A Functional Antipollutant Blend Through Reducing B[A] P-Induced Intracellular Oxidative Stress And Uva Exposure, Gi̇zem Örs, Sultan Gülçe İz
Turkish Journal of Biology
Benzo[a]pyrene (B[a]P) is a ubiquitous environmental pollutant that reacts with skin and induces intracellular oxidative stress through reactive oxygen species (ROS) accumulation. The antipollution properties of natural extracts, especially including antioxidants, for inhibiting ROS in cells are gaining importance, in addition to the anticancer effects attributed to them. In this study, a commercial functional antipollutant blend of plant extracts consisting of ellagic acid standardized Punica granatum peel extract, Sambucus nigra fruit extract, Prunus cerasus seed extract, and hydrolyzed wheat protein with high antioxidant properties and UV damage-protective properties attributed to each one was investigated. The cytoprotective effect of this functional …
Identification Of Ifitm3 And Mgat1 As Novel Interaction Partners Of Bri3by Yeast Two-Hybrid Screening, İzzet Aki̇va, Necla Bi̇rgül İyi̇son
Identification Of Ifitm3 And Mgat1 As Novel Interaction Partners Of Bri3by Yeast Two-Hybrid Screening, İzzet Aki̇va, Necla Bi̇rgül İyi̇son
Turkish Journal of Biology
No abstract provided.
Evaluation Of Genome Scaffolding Tools Using Pooled Clone Sequencing, Eli̇f Dal, Can Alkan
Evaluation Of Genome Scaffolding Tools Using Pooled Clone Sequencing, Eli̇f Dal, Can Alkan
Turkish Journal of Biology
DNA sequencing technologies hold great promise in generating information that will guide scientists to understand how the genome affects human health and organismal evolution. The process of generating raw genome sequence data becomes cheaper and faster, but more error-prone. Assembly of such data into high-quality finished genome sequences remains challenging. Many genome assembly tools are available, but they differ in terms of their performance and their final output. More importantly, it remains largely unclear how to best assess the quality of assembled genome sequences. Here we evaluate the accuracies of several genome scaffolding algorithms using two different types of data …
Peptidomic Characterization And Bioactivity Of Protoiurus Kraepelini(Scorpiones: Iuridae) Venom, Tuğba Doğan, Naşi̇t İğci̇, Ayşenur Bi̇ber, Seli̇n Gerekci̇, Hepşen Hazal Hüsnügi̇l, Afi̇fe İzbirak, Can Özen
Peptidomic Characterization And Bioactivity Of Protoiurus Kraepelini(Scorpiones: Iuridae) Venom, Tuğba Doğan, Naşi̇t İğci̇, Ayşenur Bi̇ber, Seli̇n Gerekci̇, Hepşen Hazal Hüsnügi̇l, Afi̇fe İzbirak, Can Özen
Turkish Journal of Biology
Protoiurus kraepelini is a scorpion species found in parts of Turkey and Greece. In this study, the peptide profile of its venom was determined for the first time. The electrophoretic profile of the crude venom showed a protein distribution from 2 to 130 kDa. MALDI-TOF MS analysis of the venom peptide fraction yielded 27 peptides between 1059 and 4623 Da in mass. Several ion channelblocking and antimicrobial peptides were identified by peptide mass fingerprinting analysis. Cytotoxic and antimicrobial effects of the venom were also demonstrated on Jurkat cells and Escherichia coli, respectively. As the first peptidomic characterization study on P. …
Effect Of Long-Term Administration Of Cinnamomum Cassia Silver Nanoparticles On Organs (Kidneys And Liver) Of Sprague-Dawley Rats, Koffi Kouame, Aniekan Peter, Edidiong Akang, Mistura Adana, Roshila Moodlay, Edwin C. Naidu, Onyemaechi Azu
Effect Of Long-Term Administration Of Cinnamomum Cassia Silver Nanoparticles On Organs (Kidneys And Liver) Of Sprague-Dawley Rats, Koffi Kouame, Aniekan Peter, Edidiong Akang, Mistura Adana, Roshila Moodlay, Edwin C. Naidu, Onyemaechi Azu
Turkish Journal of Biology
This study investigated the toxic effects of silver on the kidneys and livers of Sprague-Dawley rats after administering multiple doses of silver nanoparticles synthesized using extracts of Cinnamomum cassia (CcAgNPs). Twenty-four Sprague-Dawley rats (250 ± 20 g) were randomly assigned to four groups (A-D) of six animals per group and treated for 8 weeks. Group A was administered 200 mg/kg of Cinnamon Cassia extract (Cc), group B 5 mg/kg of CcAgNPs, group C 10 mg/kg of CcAgNPs, and group D normal saline. Body weight was measured weekly and fasting blood glucose was measured fortnightly. At the end of the experiment, …
The Role Of Silver Ions In The Regulation Of The Senescence Process In Triticum Aestivum, Mert Öktem, Yüksel Keleş
The Role Of Silver Ions In The Regulation Of The Senescence Process In Triticum Aestivum, Mert Öktem, Yüksel Keleş
Turkish Journal of Biology
The control of senescence has economic importance due to its effects on parameters such as herbal product quality and shelf life. This study is on the control of induced senescence in Triticum aestivum L. `Gu?n-91' plants with silver nitrate (AgNO3) treatments. It was observed that some changes that occurred with dark and indole-1-acetic acid (IAA) treatments could be reduced with AgNO3 treatments. After dark-induced senescence, it was observed in plants that seedling length, relative water content (RWC), chlorophyll, ß-carotene, xanthophylls, total antioxidant capacity, soluble phenol, total soluble protein, catalase (CAT), total superoxide dismutase (SOD), copper-zinc superoxide dismutase (Cu/Zn-SOD) activities, and …
Effectiveness Of Bitter Melon Extract In The Treatment Of Ischemic Wounds In Rats, Öznur Gürlek Kisacik, Ülkü Güneş, Mustafa Volkan Yaprakci, Korhan Altunbaş
Effectiveness Of Bitter Melon Extract In The Treatment Of Ischemic Wounds In Rats, Öznur Gürlek Kisacik, Ülkü Güneş, Mustafa Volkan Yaprakci, Korhan Altunbaş
Turkish Journal of Biology
There is no consensus on the properties of an ideal dressing for treating wounds. The aim of this study was to investigate the efficacy of dressings using topically administered bitter melon extract with olive oil, pure olive oil, nitrofurazone, and saline in the healing of ischemic wounds. A sample group of 48 rats was used in the trial. Their wounds were treated with bitter melon extract, pure olive oil, nitrofurazone, and saline. Data were collected between October 2014 and April 2015. The highest percentage (94.7%) of wound healing was observed in the bitter melon extract group and the lowest percentage …
Identification Of Conserved Mirna Molecules In Einkorn Wheat (Triticum Monococcum Subsp. Monococcum) By Using Small Rna Sequencing Analysis, Ercan Selçuk Ünlü, Sara Bataw, Di̇dem Şen, Yunus Şahi̇n, Nusret Zenci̇rci̇
Identification Of Conserved Mirna Molecules In Einkorn Wheat (Triticum Monococcum Subsp. Monococcum) By Using Small Rna Sequencing Analysis, Ercan Selçuk Ünlü, Sara Bataw, Di̇dem Şen, Yunus Şahi̇n, Nusret Zenci̇rci̇
Turkish Journal of Biology
Triticum monococcum subsp. monococcum as a first cultivated diploid wheat species possesses desirable agronomic and quality characteristics. Drought and salinity are the most dramatic environmental stress factors that have serious impact on yield and quality of crops; however, plants can use alternative defense mechanisms against these stresses. The posttranscriptional alteration of gene expression by microRNAs (miRNAs) is one of the most conserved mechanisms. In plant species including wheat genomes, miRNAs have been implicated in the management of salt and drought stress; however, studies on einkorn wheat (Triticum monococcum subsp. monococcum) are not yet available. In this study, we aimed to …
Decellularization Of Rat Adipose Tissue, Diaphragm, And Heart: A Comparison Of Two Decellularization Methods, Meli̇s Sesli̇, Esi̇n Akbay, Mehmet Ali̇ Onur
Decellularization Of Rat Adipose Tissue, Diaphragm, And Heart: A Comparison Of Two Decellularization Methods, Meli̇s Sesli̇, Esi̇n Akbay, Mehmet Ali̇ Onur
Turkish Journal of Biology
Decellularization is a process that involves the removal of cellular material from the tissues and organs while maintaining the structural, functional, and mechanical properties of extracellular matrix. The purpose of this study was to carry out decellularization of rat adipose tissue, diaphragm, and heart by using two different methods in order to compare their efficiency and investigate proliferation profiles of rat adipose-tissue-derived mesenchymal stem cells (AdMSCs) on these scaffolds. Tissues were treated with an optimized detergent-based decellularization (Method A) and a freeze-and-thaw-based decellularization (Method B). AdMSCs were then seeded on scaffolds having a density of 2 × 105 cells/scaffold and …
Deep Sequencing Reveals Two Jurkat Subpopulations With Distinct Mirna Profiles During Camptothecin-Induced Apoptosis, İpek Erdoğan, Mehmet İlyas Coşacak, Ayten Nalbant Aldanmaz, Bünyami̇n Akgül
Deep Sequencing Reveals Two Jurkat Subpopulations With Distinct Mirna Profiles During Camptothecin-Induced Apoptosis, İpek Erdoğan, Mehmet İlyas Coşacak, Ayten Nalbant Aldanmaz, Bünyami̇n Akgül
Turkish Journal of Biology
MicroRNAs (miRNAs) are small noncoding RNAs of about 19-25 nt that regulate gene expression posttranscriptionally under various cellular conditions, including apoptosis. The miRNAs involved in modulation of apoptotic events in T cells are partially known. However, heterogeneity associated with cell lines makes it difficult to interpret gene expression signatures, especially in cancer-related cell lines. Treatment of the Jurkat T-cell leukemia cell line with the universal apoptotic drug, camptothecin, resulted in identification of two Jurkat subpopulations: one that is sensitive to camptothecin and another that is rather intrinsically resistant. We sorted apoptotic Jurkat cells from nonapoptotic ones prior to profiling miRNAs …
Cloning, Expression, And Activity Analysis Of Human Cathepsin C In The Yeast Pichia Pastoris, Cenk Dağlioğlu
Cloning, Expression, And Activity Analysis Of Human Cathepsin C In The Yeast Pichia Pastoris, Cenk Dağlioğlu
Turkish Journal of Biology
The yeast Pichia pastorisexpression system was investigated for the production of human cathepsin C (CatC) recombinant protein. The full-length CatC cDNA, corresponding to amino acids 12-475, was synthesized from interleukin-2 (IL-2) stimulated human peripheral blood mononuclear cells and subcloned in the pGEM-T cloning vector. After confirming the DNA sequence of the insert, the gene was cloned into the pPICZ\alphaA expression vector under the control of the methanol-inducible alcohol oxidase (AOX1) promoter and transformed to P. pastoris X-33 cells. The expressed protein was secreted into the culture medium through the alpha-factor mating signal sequence of the expression vector. Analysis of the …
Optimization, Purification, And Characterization Of An Extracellular Antifungal Protein From Serratia Marcescens Dt3 Isolated From Soil In Vietnam, Tuyen Thi Do, Thao Thi Nguyen, Thanh Sy Le Nguyen, Hoang Thanh Le
Optimization, Purification, And Characterization Of An Extracellular Antifungal Protein From Serratia Marcescens Dt3 Isolated From Soil In Vietnam, Tuyen Thi Do, Thao Thi Nguyen, Thanh Sy Le Nguyen, Hoang Thanh Le
Turkish Journal of Biology
Gram-negative Serratia marcescens is a potential biological control agent of fungal plant diseases in many tropical regions. Its antifungal activity is due to the production of prodigiosin, protease, chitinase, and other substances that act to weaken the fungal cell wall and cause lysis. In the following investigation, a novel extracellular protein with antifungal activity against Rhizoctonia solani and Fusarium oxysporum was optimally produced, purified, and characterized from a native Serratia marcescens DT3. Under optimal conditions (medium containing 1.25% peptone, 0.5% yeast extract; temperature of 28 °C; initial pH of 7; culture time of 28 h), the antifungal activity of the …
The Sca1+ Mesenchymal Stromal Subpopulation Promotesdendritic Cell Commitment In The Niche, Na Li, Dandan Yin, Huijie Zhang, Jinmei Xu, Fan Wen, Zheng Liu, Yaozhen Chen, Ning An, Jiajia Xin, Yazhou Wang, Wen Yin, Xingbin Hu
The Sca1+ Mesenchymal Stromal Subpopulation Promotesdendritic Cell Commitment In The Niche, Na Li, Dandan Yin, Huijie Zhang, Jinmei Xu, Fan Wen, Zheng Liu, Yaozhen Chen, Ning An, Jiajia Xin, Yazhou Wang, Wen Yin, Xingbin Hu
Turkish Journal of Biology
The hematopoietic microenvironment regulates self-renewal and differentiation of hematopoietic stem cells. Mesenchymal stromal cells (MSCs) contribute to the niche and participate in supporting dendritic cell (DC) commitment in vitro and in vivo. However, due to MSCs being heterogenic, it is necessary to understand the function of the MSC subpopulation in modulating the DC commitment. The current study showed that one of the bone-related Sca1+ MSCs enhanced bone marrow cell differentiation into DCs by direct cell-to-cell contact. Furthermore, the expression of STAT3 and STAT5 genes decreased in supernatant cells after Sca1+ MSCs were cocultured with bone marrow cells. In contrast, the …
Characterization And Pathogenicity Of Fusarium Proliferatum Andfusarium Verticillioides, Causal Agents Of Fusarium Ear Rot Of Corn, Nur Ain Izzati Mohd Zainudin, Farah Aqila Hamzah, Nor Azizah Kusai, Nur Syuhada Zambri, Suhaida Salleh
Characterization And Pathogenicity Of Fusarium Proliferatum Andfusarium Verticillioides, Causal Agents Of Fusarium Ear Rot Of Corn, Nur Ain Izzati Mohd Zainudin, Farah Aqila Hamzah, Nor Azizah Kusai, Nur Syuhada Zambri, Suhaida Salleh
Turkish Journal of Biology
Fusarium ear rot is a significant disease of corn caused by several toxigenic Fusarium species including Fusarium proliferatum and Fusarium verticillioides. Forty-one Fusarium isolates were recovered from corn with Fusarium ear rot disease symptoms collected from Peninsular Malaysia. Isolates were classified into three described species known as F. proliferatum, F. verticillioides, and F. solani. Based on sexual compatibility test, four isolates from F. proliferatum (MATD-1) were crossed-fertile with tester isolate F. proliferatum D024853 (MATD-2), producing perithecia in the presence of ascospores. Meanwhile, the isolates from F. verticillioides (MATA-2) were crossed with tester isolate F. verticillioides A00149 (MATA-1), but were found …
Characterization Of The Promoter Region Of The Glycerol-3-Phosphate-O-Acyltransferase Gene In Lilium Pensylvanicum, Lijing Chen, Li Zhang, Weikang Qi, Muhammad Irfan, Jing-Wei Lin, Hui Ma, Zhi-Fu Guo, Ming Zhong, Tian-Lai Li
Characterization Of The Promoter Region Of The Glycerol-3-Phosphate-O-Acyltransferase Gene In Lilium Pensylvanicum, Lijing Chen, Li Zhang, Weikang Qi, Muhammad Irfan, Jing-Wei Lin, Hui Ma, Zhi-Fu Guo, Ming Zhong, Tian-Lai Li
Turkish Journal of Biology
Cold environmental conditions influence the growth and development of plants, causing crop reduction or even plant death. Under stress conditions, cold-inducible promoters regulate cold-related gene expression as a molecular switch. Recent studies have shown that the chloroplast-expressed GPAT gene plays an important role in determining cold sensitivity. However, the mechanism of the transcriptional regulation of GPAT is ambiguous. The 5'-flanking region of GPAT with length of 1494 bp was successfully obtained by chromosome walking from Lilium pensylvanicum. The cis-elements of GPAT promoters were predicted and analyzed by a plant cis-acting regulatory DNA element database. There exist core promoter regions including …
Cell-Compatible Phb/Silk Fibroin Composite Nanofibermat For Tissue Engineering Applications, Zeynep Karahali̇loğlu
Cell-Compatible Phb/Silk Fibroin Composite Nanofibermat For Tissue Engineering Applications, Zeynep Karahali̇loğlu
Turkish Journal of Biology
Cell compatibility is one of the prominent requirements for the fabrication of tissue engineering materials. Silk fibroin (SF) is an excellent material for biomedical applications and shows desirable properties such as good compatibility, minimal tissue reaction, and tailorable degradability. Poly[(R)-3-hydroxybutyrate] (PHB) has a high percentage of crystallinity and a high melting temperature. In this study, PHB and SF were blended together to improve the mechanical properties of the SF fibrous structure and the crystallinity of PHB. Furthermore, the cell-biomaterial interaction on the PHB/SF composite scaffold was expected to be enhanced via the SF. For this purpose, PHB/SF composite scaffolds were …
Fret-Based Characterization Of K264a, D345a, And Y335amutants In The Human Dopamine Transporter, Oya Orun, Pinar Mega Ti̇ber
Fret-Based Characterization Of K264a, D345a, And Y335amutants In The Human Dopamine Transporter, Oya Orun, Pinar Mega Ti̇ber
Turkish Journal of Biology
The dopamine transporter (DAT) plays a role in the termination of dopaminergic neurotransmission; thereby it is accepted as the primary target of various psychostimulants. N-terminal phosphorylation of DAT has been proposed as a regulator in different DAT functions, such as amphetamine-induced efflux or PKC/PKA-mediated responses. To understand the role of N-terminal conformational changes in dopamine transporter structure and function, the fluorescence resonance energy transfer (FRET) method was applied to various DAT constructs fluorescently labeled at the N-terminus and substrate-induced conformational changes were determined using rhodamine-labeled cocaine analog JHC1-64 in three DAT mutants. The results indicated that the construct with YFP …
Production And Characterization Of Polyclonal Antibodies To Human Recombinant Domain B-Free Antihemophilic Factor Viii, Artem Tykhomyrov, Victor Nedzvetsky, Sergiy Shemet, Can Ali̇ Ağca
Production And Characterization Of Polyclonal Antibodies To Human Recombinant Domain B-Free Antihemophilic Factor Viii, Artem Tykhomyrov, Victor Nedzvetsky, Sergiy Shemet, Can Ali̇ Ağca
Turkish Journal of Biology
Moroctocog alpha is a human B-domain deleted recombinant factor VIII (BDDrFVIII), which represents a new generation of pure antihemophilic products. We describe here an optimized procedure for polyclonal anti-FVIII-antibody production with the use of BDDrFVIII as an immunogen. The main immunochemical characteristics of the produced antibodies and their potential biomedical applications are also reported. Rabbits were immunized with BDDrFVIII as an emulsion with Freund's adjuvant or with antigen immobilized in polyacrylamide gel (PAAG). Antibody titers in immune sera were assayed by enzyme-linked immunosorbent assay (ELISA). IgG purification was performed by affine chromatography on protein A-sepharose. Immune sera and IgG were …
Analysis Of Ca125 Antigen In Normal Human Seminal Plasma Highlightsthe Molecular Heterogeneity Of Underlying Glycosylated Species, Ninoslav Mitic, Bojana Milutinovic, Miroslava Jankovic
Analysis Of Ca125 Antigen In Normal Human Seminal Plasma Highlightsthe Molecular Heterogeneity Of Underlying Glycosylated Species, Ninoslav Mitic, Bojana Milutinovic, Miroslava Jankovic
Turkish Journal of Biology
Cancer antigen CA125 represents an extracellular part of transmembrane mucin MUC16 and may be expressed in tissues of the male reproductive tract. It reaches human seminal plasma (hSP) after undergoing the main processes involved in protein speciation: synthesis, posttranslational modifications, compartmentalization, and auto/proteolytic degradation. This study was aimed at profiling CA125-immunoreactive species in hSP from healthy subjects as a specific and unexplored source of this tumor-associated antigen expressed under normal physiological conditions. High molecular mass components from total hSP and corresponding acid-soluble hSP preparations were analyzed. The results indicated that antibodies recognizing two distinct immunogenic areas of CA125 antigen exhibited …
Role Of Alternative Phosphorylation And O-Glycosylation Of Erythropoietinreceptor In Modulating Its Function: An In Silico Study, Humera Kausar, Sana Gul, Waqar Ahmad, Sana Awan, Muhammad Tahir Sarwar, Bushra Ijaz, Muhammad Ansar, Sultan Asad, Sajida Hassan
Role Of Alternative Phosphorylation And O-Glycosylation Of Erythropoietinreceptor In Modulating Its Function: An In Silico Study, Humera Kausar, Sana Gul, Waqar Ahmad, Sana Awan, Muhammad Tahir Sarwar, Bushra Ijaz, Muhammad Ansar, Sultan Asad, Sajida Hassan
Turkish Journal of Biology
Detailed knowledge of the three-dimensional (3D) structure of a protein is essential for the proper understanding of its function(s) that could be modified through posttranslational modifications (PTMs). Among these PTMs, alterations of serine/threonine residues of a protein through phosphorylation and O-glycosylation are extremely dynamic and could modulate the functions of a protein by affecting their 3D structure. Potential of a protein for certain PTMs could be evaluated through computer-based methods. Erythropoietin (EPO) is a multifunctional protein that primarily regulates red blood cell production and is also involved in other nonhematopoietic functions; for example, EPO also has cardioprotective and neuroprotective effects. …
Studies On Organogenesis During Regeneration In The Earthworm, Eudrilus Eugeniae, In Support Of Symbiotic Association With Bacillus Endophyticus, Elaiya Raja Subramanian, Dineshkumar Sudalaimani, Johnson Retnaraj Samuel Selvan Christyraj, Kalidas Ramamoorthy M, Nino Gopi D, Jackson Durairaj Selvan Christyraj, Kasimani Renganathan, Sundar Krishnan, Sudhakar Sivasubramaniam
Studies On Organogenesis During Regeneration In The Earthworm, Eudrilus Eugeniae, In Support Of Symbiotic Association With Bacillus Endophyticus, Elaiya Raja Subramanian, Dineshkumar Sudalaimani, Johnson Retnaraj Samuel Selvan Christyraj, Kalidas Ramamoorthy M, Nino Gopi D, Jackson Durairaj Selvan Christyraj, Kasimani Renganathan, Sundar Krishnan, Sudhakar Sivasubramaniam
Turkish Journal of Biology
Organogenesis and animal adaptation upon loss of body parts are crucial events in regeneration of all traits, and both are uncovered areas in biology. The organogenesis of the mouth and anus during regeneration was studied in Eudrilus eugeniae. It was found that the earthworm regenerates a functional mouth and anus in six days. During the course of organogenesis, the earthworm adopts unique starvation behavior for 5 days, and the starvation triggers the gut microflora of E. eugeniae to produce riboflavin. One of the efficient riboflavin-producing bacteria, Bacillus endophyticus, confirmed through 16S rRNA sequencing, has been isolated from its gut. The …
The Mtt Viability Assay Yields Strikingly False-Positive Viabilities Although The Cells Are Killed By Some Plant Extracts, Di̇dem Karakaş, Ferda Ari, Engi̇n Ulukaya
The Mtt Viability Assay Yields Strikingly False-Positive Viabilities Although The Cells Are Killed By Some Plant Extracts, Di̇dem Karakaş, Ferda Ari, Engi̇n Ulukaya
Turkish Journal of Biology
The MTT assay is one of the often used cell viability/cytotoxicity assays. However, when the methanol extracts of plants are used to test their cytotoxic potential, interference may occur, resulting in false-positive viability results. Therefore, in this study, the reliability of the MTT assay was investigated in the case of plant use. The methanol extracts of three different plants (Hypericum adenotrichum, Salvia kronenburgii, and Pelargonium quercetorum) were tested in breast cancer cell lines (MCF-7 and MDA-MB-231) using the MTT assay and the results were compared to the ATP assay, which is a much more sensitive and reliable assay due to …