Biology Commons^™

Using On‐Line Data Sources To Allow Students To Test Hypotheses About River Flow And Effects On Remotely Sensed Coastal Ocean Properties., Lawrence B. Cohoon, Kristin M. Hardy, Dustin M. Allen

Biological Sciences

This exercise shows students how to relate remotely sensible properties of coastal waters to variations in river discharge using on‐line data resources. Students can then test hypotheses about the effects of climate changes (drought and wet periods), anthropogenic impacts (urbanized, agricultural, or undeveloped watersheds), or seasonality on river discharges and their consequences, if any, on coastal water quality as determined from remotely sensed properties. River flow has been measured for various periods of time, in some cases from almost the beginning of the 20^th century, at many locations throughout the U.S. by the U.S. Geological Survey, with data on …

Bioluminescence In The Sea, Steven H.D. Haddock, Mark A. Moline, James F. Case

Biological Sciences

Bioluminescence spans all oceanic dimensions and has evolved many times—from bacteria to fish—to powerfully influence behavioral and ecosystem dynamics. New methods and technology have brought great advances in understanding of the molecular basis of bioluminescence, its physiological control, and its significance in marine communities. Novel tools derived from understanding the chemistry of natural light-producing molecules have led to countless valuable applications, culminating recently in a related Nobel Prize. Marine organisms utilize bioluminescence for vital functions ranging from defense to reproduction. To understand these interactions and the distributions of luminous organisms, new instruments and platforms allow observations on individual to oceanographic …

The Metabolic Demands Of Swimming Behavior Influence The Evolution Of Skeletal Muscle Fiber Design In The Brachyuran Crab Family Portunidae, Kristin M. Hardy, Sean C. Lema, Stephen T. Kinsey

Biological Sciences

We investigated the influence of intracellular diffusion on muscle fiber design in several swimming and non-swimming brachyuran crabs. Species with sustained swimming behavior had aerobic dark fibers subdivided into small metabolic functional units, creating short diffusion distances necessary to support the high rates of aerobic ATP turnover associated with endurance activity. This dark fiber design was observed in all swimming species including Ovalipes ocellatus, which has apparently evolved swimming behavior independently of other Portunidae. In addition, we observed fiber and subdivision size-dependent differences in organelle distribution. Mitochondria, which rely on oxygen to function, were uniformly distributed in small fibers/subdivisions, …

First Record Of The Extinct Sawfish Propristis Schweinfurthi Dames, 1883 (Batoidea: Pristiformes: Pristidae) From The Middle Eocene Of Spain, Francesc Farrés, Harry L. Fierstine

Biological Sciences

A partial rostrum of Propristis schweinfurthi Dames, 1883 was collected in the Bartonian strata of northeastern Spain. The specimen represents the second record of the species from Europe, and the second occurrence of a sawfish (Mesopristis osonensis Farrés, 2003) from the Vic-Manlleu Marls Formation. In spite of some evidence to the contrary, Propristis probably preferred ecological conditions similar to extant sawfishes, i.e., inhabiting near shore tropical to subtropical seas with occasional excursions into freshwater.

Dissolved Organic Matter Influences The Timing Of Embryonic Development Of The Purple Sea Urchin, Strongylocentrotus Purpuratus., Corbin J. Hodges

Master's Theses

Marine dissolved organic matter (DOM) comprises one of the largest carbon reservoirs on earth and has long been considered a potential energy source for marine invertebrates. The importance of DOM transport has been adequately demonstrated for unicellular organisms, where DOM can meet 100% of an organisms energy needs, but the effects of DOM uptake for marine metazoans are less well understood. In this study, three general areas involving the influence of DOM transport to marine invertebrates were explored. First, we assessed the effects of using seawater exposed to high intensity ultraviolet radiation (UVR) on the study organism; embryos of the …

Exhaustive Exercise Training Enhances Aerobic Capacity In American Alligator (Alligator Mississippiensis), John Eme, Tomasz Owerkowicz, June Gwalthney, Jason M. Blank, Bryan C. Rourke, James W. Hicks

Biological Sciences

The oxygen transport system in mammals is extensively remodelled in response to repeated bouts of activity, but many reptiles appear to be ‘metabolically inflexible’ in response to exercise training. A recent report showed that estuarine crocodiles (Crocodylus porosus) increase their maximum metabolic rate in response to exhaustive treadmill training, and in the present study, we confirm this response in another crocodilian, American alligator (Alligator mississippiensis). We further specify the nature of the crocodilian training response by analysing effects of training on aerobic [citrate synthase (CS)] and anaerobic [lactate dehydrogenase (LDH)] enzyme activities in selected skeletal muscles, …

Surgical Removal Of Right-To-Left Cardiac Shunt In The American Alligator (Alligator Mississippiensis) Causes Ventricular Enlargement But Does Not Alter Apnoea Or Metabolism During Diving, John Eme, June Gwalthney, Jason M. Blank, Tomasz Owerkowicz, Gildardo Barron, James W. Hicks

Biological Sciences

Crocodilians have complete anatomical separation between the ventricles, similar to birds and mammals, but retain the dual aortic arch system found in all non-avian reptiles. This cardiac anatomy allows surgical modification that prevents right-to-left (R–L) cardiac shunt. A R–L shunt is a bypass of the pulmonary circulation and recirculation of oxygen-poor blood back to the systemic circulation and has often been observed during the frequent apnoeic periods of non-avian reptiles, particularly during diving in aquatic species. We eliminated R–L shunt in American alligators (Alligator mississippiensis) by surgically occluding the left aorta (LAo; arising from right ventricle) upstream and …

Evaluating Connectivity Between Marine Protected Areas Using Codar High-Frequency Radar, Brian Zelenke, Mark A. Moline, Burt H. Jones, Steven R. Ramp, Greg B. Crawford, John L. Largier, Eric J. Terrill, Newell Garfield Iii, Jeffrey D. Paduan, Libe Washburn

Biological Sciences

To investigate the connectivity between central California marine protected areas (MPAs), back-projections were calculated using the network of high-frequency (HF) radar ocean surface current mapping stations operated along the California coast by the member institutions of the Coastal Ocean Currents Monitoring Program with funding provided by California voters through Propositions 40 & 50 and administered by the State Coastal Conservancy. Trajectories of 1 km resolution grids of water particles were back-projected from ten MPAs each hour, out through 40 days in the past, from each day in 2008, producing a map of where surface waters travel over a 40-day period …

Ornithocoprophilous Plants Of Mount Desert Rock, A Remote Bird-Nesting Island In The Gulf Of Maine, U.S.A, Nishanta Rajakaruna, Nathaniel S. Pope, Jose Perez-Orozco, Tanner B. Harris

Biological Sciences

Plants growing on seabird-nesting islands are uniquely adapted to deal with guano-derived soils high in N and P. Such ornithocoprophilous plants found in isolated, oceanic settings provide useful models for ecological and evolutionary investigations. The current study explored the plants found on Mount Desert Rock (MDR), a small seabird-nesting, oceanic island 44 km south of Mount Desert Island (MDI), Hancock County, Maine, U.S.A. Twenty-seven species of vascular plants from ten families were recorded. Analyses of guano-derived soils from the rhizosphere of the three most abundant species from bird-nesting sites of MDR showed significantly higher (P < 0.05) NO₃⁻, available …

A Hump-Shaped Relationship Between Isolation And Abundance Of Notonecta Irrorata Colonists In Aquatic Mesocosms, Shannon J. Mccauley, Christopher J. Davis, Jennifer Nystrom, Earl E. Werner

Biological Sciences

We examined the relationship between the isolation of experimental aquatic mesocosms and the abundance of an aquatic insect colonist, Notonecta irrorata, over two years. We used a curve-fitting approach to assess whether linear or quadratic models better describe the relationship between isolation and abundance. For two measures of mesocosm isolation, distance to nearest source and distance to the largest source population, there was a significant quadratic relationship between isolation and abundance. Abundance of colonizing N. irrorata was not found to be significantly related to a third measure of isolation, mesocosm connectivity. These results indicate that the relationship between habitat …

Density Dependence And The Economic Efficacy Of Marine Reserves, Crow White

Biological Sciences

Predictions on the efficacy of marine reserves for benefiting fisheries differ in large part due to considerations of models of either intra- or inter-cohort population density regulating fish recruitment. Here, I consider both processes acting on recruitment and show using a bioeconomic model how for many fisheries density dependent recruitment dynamics interact with harvest costs to influence fishery profit with reserves. Reserves consolidate fishing effort, favoring fisheries that can profitably harvest low-density stocks of species where adult density mediates recruitment. Conversely, proportion coastline in reserves that maximizes profit, and relative improvement in profit from reserves over conventional management, decline with …

Sex And Microhabitat Influence The Allocation Of Mycosporine-Like Amino Acids To Tissues In The Purple Sea Urchin, Strongylocentrotus Purpuratus, Sarah A. Gravem

Master's Theses

Field surveys of Strongylocentrotus purpuratus demonstrated that concentrations of natural sunscreens, mycosporine-like amino acids (MAAs), were higher in females than males for both gonadal and epidermal tissues, increased in ovaries as spawning season approached, and were influenced by the sea urchins’ microhabitat. Sea urchins occupying burrows, or “pits”, had lower concentrations of MAAs than those outside pits, suggesting a trade-off between physical and UV protection. Overall, UV irradiance did not influence MAA accumulation in gonadal tissues. However, males increased their allocation of MAAs to epidermal tissues in the microhabitat with the highest irradiance. Relative concentrations of individual MAAs were similar …

Impact Of Weed Management Practices On Grapevine Growth, Yield Components, Plant And Arthropod Abundance, And Carabid Seed Predation In Paso Robles Vineyard, Paolo Sanguankeo

Master's Theses

In the Central Coast of California, USA, wine grape growers are making efforts to identify weed control practices that promote biodiversity in their vineyards while maintaining yields. A field study was conducted in Paso Robles, CA in 2006 and 2007 evaluating the effect on Zinfandel grape-vine growth and production, groundcover plant, and ground dwelling arthropod communities of five weed control practices: 1) flumioxazin, 2) simazine, 3) cultivation, 4) cover crop, and 5) untreated control.

The herbicide treatments had the lowest weed biomass followed by the cultivation, being approximately 10 and 2 times lower than the weed biomass of either the …

Mimicking Fire For Post-Mining Restoration Success, Katherine M. Wilkin

Master's Theses

This study is based at Rocky Canyon Quarry (RCQ), a 200-acre granite aggregate open-pit quarry with chaparral-dominated plant communities located in San Luis Obispo County, CA. At RCQ, the Surface Mining and Reclamation Act (SMARA) of 1975 was interpreted as restoring the landscape to native plant communities. Native plant community restoration projects have occurred there since 1993 through cooperation with California Polytechnic State University Biology Department in San Luis Obispo, CA. I evaluated past restoration at RCQ and researched new techniques to improve chaparral restoration based on the natural processes of fire.

Chaparral is an important fire-dominated plant community within …

Exposure To Ultraviolet Radiation Causes Proteomic Changes In Embryos Of The Purple Sea Urchin, Strongylocentrotus Purpuratus, Joseph Paul Campanale

Master's Theses

The amount of solar ultraviolet radiation (UVR, 290-400 nm) reaching Earth’s surface is increasing due to ozone depletion and global climate change. Embryos of the purple sea urchin, Strongylocentrotus purpuratus, provide an ideal system for examining how UVR affects developing marine organisms and cells in general. To model the protein-mediated cell cycle response to UV-irradiation, six batches of S. purpuratus embryos were exposed to UVR, monitored for delays in the first mitotic division and examined for global proteomic changes. Embryos from each batch were exposed to or protected from artificial UVR for 25 or 60 min. Embryos treated with …

Biology Of Ultramafic Rocks And Soils: Research Goals For The Future, Robert S. Boyd, Arthur R. Kruckeberg, Nishanta Rajakaruna

Biological Sciences

In absence of a text abstract the introduction of the article is provided.

Introduction

At this, the 6th International Conference on Serpentine Ecology, it seems timely to review briefl y the present status of the fi eld and to project the needs for future research. Although a great deal of serpentine research was done prior to 1960, as summarized by Krause (1958) and discussed briefl y by Brooks (1987), much of our progress in learning how serpentine geology affects plant and animal life occurred in the mid- to late 20th century. In that era, it was the landmark studies of …

Phylogeography Of The North American Red Fox: Vicariance In Pleistocene Forest Refugia, Keith B. Aubry, Mark J. Statham, Benjamin N. Sacks, John D. Perrine, Samantha M. Wisely

Biological Sciences

Fossil, archaeological, and morphometric data suggest that indigenous red foxes in North America were derived from vicariance in two disjunct refugia during the last glaciation: one in Beringia and one in the contiguous USA. To test this hypothesis, we conducted a phylogeographical analysis of the North American red fox within its presettlement range. We sequenced portions of the mitochondrial cytochrome b (354 bp) gene and D-loop (342 bp) from 220 historical red fox specimens. Phylogenetic analysis of the cytochrome b gene produced two clades that diverged c. 400 000 years before present (bp): a Holarctic and a Nearctic clade. …

Adiantum Viridimontanum, Aspidotis Densa, Minuartia Marcescens, And Symphyotrichum Rhiannon: Additional Serpentine Endemics From Eastern North America, Tanner Harris, Nishanta Rajakaruna

Biological Sciences

Serpentine outcrops around the world are known to harbor disproportionately high rates of plant endemism. Remarkable cases of serpentine endemism occur in New Caledonia and Cuba, with 3178 and 920 endemic taxa, respectively, found solely on serpentine. Despite the patchy occurrence of serpentine in eastern North America from Québec and Newfoundland south to Alabama, only one taxon, Cerastium velutinum var. villosissimum, has been broadly recognized as a serpentine endemic for the region. Based on reports in the literature, we suggest that Adiantum viridimontanum, Minuartia marcescens, and Symphyotrichum rhiannon be considered endemic to serpentine soils from the east coast …

Advances In Serpentine Geoecology: A Retrospective, Nishanta Rajakaruna, Robert S. Boyd

Biological Sciences

(In absence of a text abstract the first paragraph of the paper is provided.)

Serpentine habitats have long provided model settings for geoecological research (reviewed in Alexander et al. 2007, Brady et al. 2005, Brooks 1987, Kazakou et al. 2008, Kruckeberg 1984, Proctor and Woodell 1975, Raja-karuna et al 2009). Serpentine loosely refers to a broad group of minerals associated with the weathering of ultramafi c (high iron and magnesium-rich) rocks found along continental margins and orogenic belts. Soils associated with such rocks often differ from more widespread soils, being less fertile and having high concentrations of some heavy metals. …

The Relationship Between Plasma Steroid Hormone Concentrations And The Reproductive Cycle Of The Northern Pacific Rattlesnake, Crotalus Oreganus, Craig Michael Lind

Master's Theses

To gain a better understanding of the role of steroid hormones in vertebrate reproduction, we quantified steroid hormone concentrations in a free ranging population of the Northern Pacific rattlesnake, Crotalus oreganus. Plasma steroid hormone concentrations were quantified for both male and female snakes throughout the active season (Mar-Oct). We measured testosterone (T), 5α-dihydrotestosterone (DHT), and corticosterone (B) concentrations in male and female snakes. 17β-estradiol (E2) and progesterone (P) were measured in females only. We also observed breeding behaviors (e.g. consortship, courtship, and copulation) in the field and measured testis and follicle size in male and female snakes from museum collections. …

Investigating The Roles Of Ndj1 And Tid1 In Distributive Segregation Using Non-Exchange Chromosomes, Jonathan V. Henzel

Master's Theses

Meiosis is a specialized cell division that leads to a reduction of ploidy in sexually reproducing organisms through segregation of homologous chromosomes at the first meiotic division. Improper segregation of chromosomes during meiosis results in anueploidy, which is usually fatal during embryonic development. The meiotic process is therefore tightly regulated. Typically, proper segregation of homologs at meiosis I requires pairing of homologous chromosomes, followed by crossover recombination between homologs. Crossovers enable proper chromosomal segregation during the first meiotic division in part by establishing tension in the meiotic spindle. However, in the absence of crossovers, some cells maintain the ability to …

Spatial, Seasonal, And Size-Dependent Variation In The Diet Of Sacramento Pikeminnow In The Main Stem Of Chorro Creek, Central Coast California, Brian G. Dugas

Master's Theses

This study examined the diet composition of ninety-nine Sacramento pikeminnow (150-410 mm [5.9-16 in] fork length [FL]) collected from the upper and lower main stem of Chorro Creek, Morro Bay Watershed, California in 2006. The goal of this study was to characterize the spatial and seasonal variability in the diet of Sacramento pikeminnow within Chorro Creek and to determine what proportion of the diet is represented by rainbow trout (Oncorhynchus mykiss) and their anadromous form (steelhead). Prey was identified in 88% of the samples collected in the early season and 84% of the samples collected in the late season. Fish …

Biological Effects Within No-Take Marine Reserves: A Global Synthesis, Sarah E. Lester, Benjamin S. Halpern, Kirsten Grorud-Colvert, Jane Lubchenco, Benjamin I. Ruttenberg, Steven D. Gaines, Satie Airamé, Robert R. Warner

Biological Sciences

The study and implementation of no-take marine reserves have increased rapidly over the past decade, providing ample data on the biological effects of reserve protection for a wide range of geographic locations and organisms. The plethora of new studies affords the opportunity to reevaluate previous findings and address formerly unanswered questions with extensive data syntheses. Our results show, on average, positive effects of reserve protection on the biomass, numerical density, species richness, and size of organisms within their boundaries which are remarkably similar to those of past syntheses despite a near doubling of data. New analyses indicate that (1) these …

Thyroid Hormone Regulation Of Mrnas Encoding Thyrotropin Β-Subunit, Glycoprotein Α-Subunit, And Thyroid Hormone Receptors Α And Β In Brain, Pituitary Gland, Liver, And Gonads Of An Adult Teleost, Pimephales Promelas, Sean C. Lema, Jon T. Dickey, Irvin R. Schultz, Penny Swanson

Biological Sciences

Thyroid hormones (THs) regulate growth, morphological development, and migratory behaviors in teleost fish, yet little is known about the transcriptional dynamics of gene targets for THs in these taxa. Here, we characterized TH regulation of mRNAs encoding thyrotropin subunits and thyroid hormone receptors (TRs) in an adult teleost fish model, the fathead minnow (Pimephales promelas). Breeding pairs of adult minnows were fed diets containing 3,5, 3^,-triiodo-_L-thyronine (T₃) or the goitrogen methimazole for 10 days. In males and females, dietary intake of exogenous T₃ elevated circulating total T₃, while methimazole …

Development, Implementation And Evaluation Of A Data-Assimilative Ocean Forecasting System Off The Central California Coast, Yi Chao, Zhijin Li, John Farrara, James C. Mcwilliams, James Bellingham, Xavier Capet, Francisco Chavez, Jei-Kook Choi, Russ Davis, Jim Doyle, David M. Fratantoni, Peggy Li, Patrick Marchesiello, Mark A. Moline, Jeff Paduan, Steve Ramp

Biological Sciences

The development and implementation of a real-time ocean forecast system based on the Regional Ocean Modeling System (ROMS) off the coast of central California are described. The ROMS configuration consists of three nested modeling domains with increasing spatial resolutions: the US West coastal ocean at 15-km resolution, the central California coastal ocean at 5 km, and the Monterey Bay region at 1.5 km. All three nested models have 32 vertical sigma (or terrain-following) layers and were integrated in conjunction with a three-dimensional variational data assimilation algorithm (3DVAR) to produce snapshots of the ocean state every 6 h (the reanalysis) and …

Bioluminescence To Reveal Structure And Interaction Of Coastal Planktonic Communities, Mark A. Moline, Shelley M. Blackwell, James F. Case, Steven H.D. Haddock, Christen M. Herren, Cristina M. Orrico, Eric Terrill

Biological Sciences

Ecosystem function will in large part be determined by functional groups present in biological communities. The simplest distinction with respect to functional groups of an ecosystem is the differentiation between primary and secondary producers. A challenge thus far has been to examine these groups simultaneously with sufficient temporal and spatial resolution for observations to be relevant to the scales of change in coastal oceans. This study takes advantage of general differences in the bioluminescence flash kinetics between planktonic dinoflagellates and zooplankton to measure relative abundances of the two groups within the same-time space volume. This novel approach for distinguishing these …

The Most Widely Publicized Gender Problem In Human Genetics, William D. Stansfield, Matthew A. Carlton

Biological Sciences

In two-child families containing at least one boy, the expected probability that such a family has two boys is 1/3, provided that the boy/girl (B/G) ratio is 1.0 and the population to which they belong has a binomial distribution of BB, (BG + GB), and GG families. It is commonly known that in most human populations the sex ratio at birth (i.e., the ratio of the number of boys to the number of girls) is greater than 1.0. Teachers and textbook writers seldom discuss the more realistic expected distributions in populations where the sex ratio is greater than 1.0. We …

Forward And Reverse Genetics Of Rapid-Cycling Brassica Oleracea, Edward Himelblau, Laurie Mentzer, Erin J. Gilchrist, Kelly Buono, Colleen Bizzell, Robert Vogelzang, Thomas Osborn, Richard M. Amasino, Isobel A.P. Parkin, George W. Haughn

Biological Sciences

Seeds of rapid-cycling Brassica oleracea were mutagenized with the chemical mutagen, ethylmethane sulfonate. The reverse genetics technique, TILLING, was used on a sample population of 1,000 plants, to determine the mutation profile. The spectrum and frequency of mutations induced by ethylmethane sulfonate was similar to that seen in other diploid species such as Arabidopsis thaliana. These data indicate that the mutagenesis was effective and demonstrate that TILLING represents an efficient reverse genetic technique in B. oleracea that will become more valuable as increasing genomic sequence data become available for this species. The extensive duplication in the B. oleracea genome …

Mendel's Search For True-Breeding Hybrids, William D. Stansfield

Biological Sciences

No abstract provided.

Hydrothermal And Thermal Time Models For The Invasive Grass, Arundo Donax, Anthony Graziani, Scott J. Steinmaus

Biological Sciences

Controlled laboratory and field experiments were performed to determine the developmental response to temperature and moisture of Arundo donax, a riparian invasive grass and potential bioenergy crop. A logistic function was parameterized and used to predict thermal times to sprouting and the nine-leaf stage. Consistent estimates of the base temperature (T_b) and base water potential (ψ_b) below which development ceases were obtained from various statistical and mathematical analyses. Estimates of T_b and ψ_b were 12.7 ± 1.7 °C and −1.56 ± 0.43 MPa, respectively, for the median fraction of sprouting rhizomes. Median …