Biology Commons^™

The Relative Importance Of Fire History, Management Treatments, Biotic, And Abiotic Factors On The Abundance Of Key Vegetative Components In An Endangered Sagebrush-Steppe Ecosystem, Ann Marie Raymondi

Boise State University Theses and Dissertations

Dryland ecosystems are globally distributed and occupy nearly half of Earth’s terrestrial surface. Drylands are particularly vulnerable to degradation and their restoration has become a global concern. Sagebrush-steppe ecosystems in the intermountain western United States have been subject to decades of active management efforts to address invasive species and restore plant communities, and can serve as a relevant case study to investigate dynamics between fire, invasive species, and management treatments in a representative dryland system. My objective was to determine the relative importance of fire history, management treatment history, abiotic, and biotic factors in relation to the abundance of key …

Alectryon Vitiensis: A New Species Of Sapindaceae Endemic To Fiji, Sven Buerki, Porter P. Lowry Ii, Jérôme Munzinger, Marika Tuiwawa, Alivereti Naikatini, Martin W. Callmander

Biology Faculty Publications and Presentations

A new species of Alectryon Gaertn. (Sapindaceae) endemic to the Fijian archipelago is described as A. vitiensis Buerki, Lowry, Munzinger & Callm. based on morphological and molecular evidence. It can easily be distinguished from the two congeners currently known from Fiji by its smaller leaves, subsessile leaflets, apetalous flowers, and crested fruits. A phylogenetic analysis using ITS sequence data shows that the new species is closely related to two Australian endemics, A. diversifolius (F. Muell.) S. T. Reynolds and A. oleifolius (Desf.) S. T. Reynolds, but differs in having compound leaves covered with a golden indument. Moreover, the Australian taxa …

Case Report: Coincidental Inclusion In A 17-Locus Y-Str Mixture, Wrongful Conviction And Exoneration, Greg Hampikian, Gianluca Peri, Shih-Shiang Lo, Mon-Hwa Chin, Kuo-Lan Liu

Biology Faculty Publications and Presentations

We report the case of a suspect (Suspect-3) who was convicted (and later exonerated) of participating in the multiple-attacker rape of two women. The forensic evidence against him was his inclusion in a 17-marker Y-STR mixture isolated from semen on one victim’s clothing. The DNA inclusion produced a match statistic with a combined probability of inclusion of 1 in 741, and a Likelihood Ratio of 3296. While the defense team was told that Suspect-3 was included in the semen DNA mixture, they were not told that all of the Y-STR alleles could also be explained by just the other two …

Fatal Attraction?: Intraguild Facilitation And Suppression Among Predators, Kelly J. Sivy, Casey B. Pozzanghera, James B. Grace, Laura R. Prugh

Biology Faculty Publications and Presentations

Competition and suppression are recognized as dominant forces that structure predator communities. Facilitation via carrion provisioning, however, is a ubiquitous interaction among predators that could offset the strength of suppression. Understanding the relative importance of these positive and negative interactions is necessary to anticipate community-wide responses to apex predator declines and recoveries worldwide. Using state-sponsored wolf (Canis lupus) control in Alaska as a quasi experiment, we conducted snow track surveys of apex, meso-, and small predators to test for evidence of carnivore cascades (e.g., mesopredator release). We analyzed survey data using an integrative occupancy and structural equation modeling …

Natural History Collections: Teaching About Biodiversity Across Time, Space, And Digital Platforms, Anna K. Monfils, Karen E. Powers, Christopher J. Marshall, Christopher T. Martine, James F. Smith, L. Alan Prather

Biology Faculty Publications and Presentations

Natural history collections offer unique physical and virtual opportunities for formal and informal progressive learning. Collections are unique data in that they each represent a biological record at a single place and time that cannot be obtained by any other method. Collections-based experiences lead to an increased understanding of and substantive interaction with the living world. Global biological diversity and changes in that diversity are directly tracked through specimens in collections, regardless of whether changes are ancient or recent. We discuss how collections, specimens, and the data associated with them, can be critical components linking nature and scientific inquiry. Specimens …

The Role Of Disease And Ectoparasites In The Ecology Of Nestling Golden Eagles, Benjamin Michael Dudek

Boise State University Theses and Dissertations

Climate and anthropogenic land use changes can alter biological communities and affect disease infection rates and parasite species distribution and abundance. Management to mitigate the threats of emerging infectious diseases and parasite species requires identifying and understanding factors that influence individual susceptibility within populations. Golden eagles (Aquila chrysaetos) in southwestern Idaho face several current and emerging threats, including a landscape-mediated diet shift that has increased the potential for disease infection, and warming temperatures that may increase the distribution and abundance of hematophagous ectoparasites. We examined prevalence of Trichomonas gallinae infection in golden eagle nestlings across western North America …

Counterintuitive Roles Of Experience And Weather On Migratory Performance, Adrian I. Rus, Adam E. Duerr, Tricia A. Miller, James R. Belthoff, Todd Katzner

Biology Faculty Publications and Presentations

Migration allows animals to live in resource-rich but seasonally variable environments. Because of the costs of migration, there is selective pressure to capitalize on variation in weather to optimize migratory performance. To test the degree to which migratory performance (defined as speed of migration) of Golden Eagles (Aquila chrysaetos) was determined by age- and season-specific responses to variation in weather, we analyzed 1,863 daily tracks (n = 83 migrant eagles) and 8,047 hourly tracks (n = 83) based on 15 min GPS telemetry data from Golden Eagles and 277 hourly tracks based on 30 s data …

Correlates Of Immune Defenses In Golden Eagle Nestlings, Benjamin M. Dudek, Julie A. Heath

Biology Faculty Publications and Presentations

An individual’s investment in constitutive immune defenses depends on both intrinsic and extrinsic factors. We examined how Leucocytozoon parasite presence, body condition (scaled mass), heterophil-to-lymphocyte (H:L) ratio, sex, and age affected immune defenses in golden eagle (Aquila chrysaetos) nestlings from three regions: California, Oregon, and Idaho. We quantified hemolytic-complement activity and bacterial killing ability, two measures of constitutive immunity. Body condition and age did not affect immune defenses. However, eagles with lower H:L ratios had lower complement activity, corroborating other findings that animals in better condition sometimes invest less in constitutive immunity. In addition, eagles with Leucocytozoon infections had higher …

Simulations Reveal The Power And Peril Of Artificial Breeding Sites For Monitoring And Managing Animals, Christopher J.W. Mcclure, Benjamin P. Pauli, Julie A. Heath

Biology Faculty Publications and Presentations

Despite common use, the efficacy of artificial breeding sites (e.g., nest boxes, bat houses, artificial burrows) as tools for monitoring and managing animals depends on the demography of target populations and availability of natural sites. Yet, the conditions enabling artificial breeding sites to be useful or informative have yet to be articulated. We use a stochastic simulation model to determine situations where artificial breeding sites are either useful or disadvantageous for monitoring and managing animals. Artificial breeding sites are a convenient tool for monitoring animals and therefore occupancy of artificial breeding sites is often used as an index of population …

Forecasting Disturbance Effects On Wildlife: Tolerance Does Not Mitigate Effects Of Increased Recreation On Wild Lands, B. P. Pauli, R. J. Spaul, J. A. Heath

Biology Faculty Publications and Presentations

There is widespread evidence that human disturbance affects wildlife behavior, but long-term population effects can be difficult to quantify. Individual-based models (IBMs) offer a way to assess population-level, aggregate effects of disturbance on wildlife. We created TRAILS (Tolerance in Raptors and the Associated Impacts of Leisure Sports), an IBM that simulates interactions between recreationists and nesting raptors, to assess the effect of human disturbance on raptor populations and test if changes in tolerance to disturbance could mitigate negative consequences. We used behavioral and demographic data from golden eagles (Aquila chrysaetos), and recreation activity data to parameterize TRAILS and …

Anthropogenic Noise Changes Arthropod Abundances, Jessie P. Bunkley, Christopher J.W. Mcclure, Akito Y. Kawahara, Clinton D. Francis, Jesse R. Barber

Biology Faculty Publications and Presentations

Anthropogenic noise is a widespread and growing form of sensory pollution associated with the expansion of human infrastructure. One specific source of constant and intense noise is that produced by compressors used for the extraction and transportation of natural gas. Terrestrial arthropods play a central role in many ecosystems, and given that numerous species rely upon airborne sounds and substrate-borne vibrations in their life histories, we predicted that increased background sound levels or the presence of compressor noise would influence their distributions. In the second largest natural gas field in the United States (San Juan Basin, New Mexico, USA), we …

Improved Supervised Classification Of Accelerometry Data To Distinguish Behaviors Of Soaring Birds, Maitreyi Sur, Srisarguru Sridhar

Biology Faculty Publications and Presentations

Soaring birds can balance the energetic costs of movement by switching between flapping, soaring and gliding flight. Accelerometers can allow quantification of flight behavior and thus a context to interpret these energetic costs. However, models to interpret accelerometry data are still being developed, rarely trained with supervised datasets, and difficult to apply. We collected accelerometry data at 140Hz from a trained golden eagle (Aquila chrysaetos) whose flight we recorded with video that we used to characterize behavior. We applied two forms of supervised classifications, random forest (RF) models and K-nearest neighbor (KNN) models. The KNN model was substantially …

It’S All About Relationships: Amf-Plant Associations, The Rhizosphere, And Our Changing World, Joel Velasco

McNair Scholars Research Journal

Arbuscular mycorrhizal fungi are obligate biotrophic organisms that facilitate nutrient uptake in exchange for organic carbon as part of a symbiotic association with their host plants. This symbiotic relationship is among the oldest known and has been important for the coevolution of both symbionts. This review explores the relationship between Arbuscular mycorrhizal fungi and their hosts, the role AMF play in the invasive strategies of certain plants, and how severe pressure affects the reciprocal relationship. This review hopes to add to the body of knowledge and to the conversation about these dynamic relationships and the timescale on which they operate, …

Evaluation Of Micro-Gps Receivers For Tracking Small-Bodied Mammals, Laura A. Mcmahon, Janet L. Rachlow, Lisa A. Shipley, Jennifer S. Forbey, Timothy R. Johnson, Peter J. Olsoy

Biology Faculty Publications and Presentations

GPS telemetry markedly enhances the temporal and spatial resolution of animal location data, and recent advances in micro-GPS receivers permit their deployment on small mammals. One such technological advance, snapshot technology, allows for improved battery life by reducing the time to first fix via postponing recovery of satellite ephemeris (satellite location) data and processing of locations. However, no previous work has employed snapshot technology for small, terrestrial mammals. We evaluated performance of two types of micro-GPS (< 20 g) receivers (traditional and snapshot) on a small, semi-fossorial lagomorph, the pygmy rabbit (Brachylagus idahoensis), to understand how GPS errors might influence fine-scale assessments of space use and habitat selection. During stationary tests, microtopography (i.e., …

Endoplasmic Reticulum Stress And Unfolded Protein Response In Cartilage Pathophysiology; Contributing Factors To Apoptosis And Osteoarthritis, Alexandria Hughes, Alexandra E. Oxford, Ken Tawara, Cheryl L. Jorcyk, Julia Thom Oxford

Biology Faculty Publications and Presentations

Chondrocytes of the growth plate undergo apoptosis during the process of endochondral ossification, as well as during the progression of osteoarthritis. Although the regulation of this process is not completely understood, alterations in the precisely orchestrated programmed cell death during development can have catastrophic results, as exemplified by several chondrodystrophies which are frequently accompanied by early onset osteoarthritis. Understanding the mechanisms that underlie chondrocyte apoptosis during endochondral ossification in the growth plate has the potential to impact the development of therapeutic applications for chondrodystrophies and associated early onset osteoarthritis. In recent years, several chondrodysplasias and collagenopathies have been recognized as …

Effects Of Delayed Nsaid Administration After Experimental Eccentric Contraction Injury – A Cellular And Proteomics Study, Laura Bond

Biology Faculty Publications and Presentations

Background

Acute muscle injuries are exceedingly common and non-steroidal anti-inflammatory drugs (NSAIDs) are widely consumed to reduce the associated inflammation, swelling and pain that peak 1–2 days post-injury. While prophylactic use or early administration of NSAIDs has been shown to delay muscle regeneration and contribute to loss of muscle strength after healing, little is known about the effects of delayed NSAID use. Further, NSAID use following non-penetrating injury has been associated with increased risk and severity of infection, including that due to group A streptococcus, though the mechanisms remain to be elucidated. The present study investigated the effects of delayed …

The Effect Of Nullomer-Derived Peptides 9r, 9s1r And 124r On The Nci-60 Panel And Normal Cell Lines, Abdelkrim Alileche, Greg Hampikian

Biology Faculty Publications and Presentations

Background: Nullomer peptides are the smallest sequences absent from databases of natural proteins. We first began compiling a list of absent 5-amino acid strings in 2006 (1). We report here the effects of Nullomer-derived peptides 9R, 9S1R and 124R on the NCI-60 panel, derived from human cancers of 9 organs (kidney, ovary, skin melanoma, lung, brain, lung, colon, prostate and the hematopoietic system), and four normal cell lines (endothelial HUVEC, skin fibroblasts BJ, colon epithelial FHC and normal prostate RWPE-1).

Methods: NCI-60 cancer cell panel and four normal cell lines were cultured in vitro in RPMI1640 supplemented with 10% Hyclone …

Barn Owls (Tyto Alba) Crossing The Road - Examining The Interplay Among Occupancy, Behavior, Habitat Selection, And Roadway Mortality In Southern Idaho, Tempe Regan

Boise State University Theses and Dissertations

Barn Owls (Tyto alba) are killed by vehicle collisions in greater numbers than any other North American bird of prey. Interstate-84 (I-84) in southern Idaho, USA has among the world’s highest known rates of Barn Owl-vehicle collisions. Little is known about Barn Owl occupancy in this region, so it is unclear if owls are killed in proportion to their abundance, or if they are equally abundant in segments with lower mortality and somehow escape collisions. Furthermore, studies of Barn Owl movements and behavior are limited. I was interested in understanding (1) factors that affect Barn Owl occupancy in …

Nonmotorized Recreation And Motorized Recreation In Shrub-Steppe Habitats Affects Behavior And Reproduction Of Golden Eagles (Aquila Chrysaetos), Robert J. Spaul, Julie A. Heath

Biology Faculty Publications and Presentations

Different forms of outdoor recreation have different spatiotemporal activity patterns that may have interactive or cumulative effects on wildlife through human disturbance, physical habitat change, or both. In western North America, shrub-steppe habitats near urban areas are popular sites for motorized recreation and nonmotorized recreation and can provide important habitat for protected species, including golden eagles. Our objective was to determine whether recreation use (i.e., number of recreationists) or recreation features (e.g., trails or campsites) predicted golden eagle territory occupancy, egg-laying, or the probability a breeding attempt resulted in ≥1 offspring (nest survival). We monitored egg-laying, hatching and fledging success, …

Variable Effects Of Snow Conditions Across Boreal Mesocarnivore Species, C. B. Pozzanghera, K. J. Sivy, M. S. Lindberg, L. R. Prugh

Biology Faculty Publications and Presentations

Mesocarnivores are increasingly recognized as key drivers of community dynamics, but the effects of bottom-up and abiotic factors on mesocarnivore populations remain poorly understood. We evaluated the effects of snow conditions, prey abundance, and habitat type on the distribution of five sympatric mesocarnivore species in interior Alaska using repeated snow track surveys and occupancy modelling. Snow depth and snow compaction were the best predictors of mesocarnivore occupancy, with differential effects across species. Coyotes (Canis latrans (Say, 1823)) and red foxes (Vulpes vulpes L., 1758) occurred in areas of shallow, compact snow, Canada lynx (Lynx canadensis (Kerr, 1792)) …

Genotypic Diversity Effects On Biomass Production In Native Perennial Bioenergy Cropping Systems, Geoffrey P. Morris, Zhenbin Hu, Paul P. Grabowski, Justin O. Borevitz, Marie-Anne De Graaff, R. Michael Miller, Julie D. Jastrow

Biology Faculty Publications and Presentations

The perennial grass species that are being developed as biomass feedstock crops harbor extensive genotypic diversity, but the effects of this diversity on biomass production are not well understood. We investigated the effects of genotypic diversity in switchgrass (Panicum virgatum) and big bluestem (Andropogon gerardii) on perennial biomass cropping systems in two experiments conducted over 2008–2014 at a 5.4-ha fertile field site in northeastern Illinois, USA. We varied levels of switchgrass and big bluestem genotypic diversity using various local and nonlocal cultivars – under low or high species diversity, with or without nitrogen inputs – and …

A Phylum-Level Phylogenetic Classification Of Zygomycete Fungi Based On Genome-Scale Data, Merlin M. White

Biology Faculty Publications and Presentations

Zygomycete fungi were classified as a single phylum, Zygomycota, based on sexual reproduction by zygospores, frequent asexual reproduction by sporangia, absence of multicellular sporocarps, and production of coenocytic hyphae, all with some exceptions. Molecular phylogenies based on one or a few genes did not support themonophyly of the phylum, however, and the phylum was subsequently abandoned. Here we present phylogenetic analyses of a genome-scale data set for 46 taxa, including 25 zygomycetes and 192 proteins, and we demonstrate that zygomycetes comprise two major clades that form a paraphyletic grade. A formal phylogenetic classification is proposed herein and includes two phyla, …

Selective Foraging By Pogonomyrmex Salinus (Hymenoptera: Formicidae) In Semiarid Grassland: Implications For A Rare Plant, Matthew S. Schmasow, Ian C. Robertson

Biology Faculty Publications and Presentations

Selective foraging by granivores can have important consequences for the structure and composition of plant communities, and potentially severe consequences for rare plant species. To understand how granivore foraging behavior affects common and rare plant species, diet selection should be viewed relative to the availability of alternative seed options, and with consideration of the individual attributes of those seeds (e.g., morphology, nutrient content). We examined the foraging decisions of Owyhee harvester ants, Pogonomyrmex salinus [Olsen], in semiarid grassland dominated by two species of grass, Poa secunda and Bromus tectorum, and two species of mustard, Sisymbrium altissimum and Lepidium papilliferum …

Spatial, Roadway, And Biotic Factors Associated With Barn Owl (Tyto Alba) Mortality And Characteristics Of Mortality Hotspots Along Interstates 84 And 86 In Idaho, Erin Melissa Arnold

Boise State University Theses and Dissertations

One of the world’s highest roadway mortality rates for barn owls (Tyto alba) occurs along Interstate 84/86 (I-84/86) in southern Idaho. Although mortality occurs in numerous portions of the I-84/86 corridor, there are segments where relatively much higher numbers of owls are killed (in total comprising >20% of the corridor total, hereafter “hotspots”). My objectives were to 1) identify areas of greatest mortality (hotspots), 2) understand the spatial, roadway, and biotic factors potentially contributing to barn owl-vehicle collisions and 3) assess how mortality hotspots have changed over time. If factors contributing to barn owl mortality along highways can …

Switchgrass Cultivar And Intraspecific Diversity Impacts On Nitrogen Use Efficiency, Aislinn Johns

Boise State University Theses and Dissertations

Bioenergy feedstock production is an important component of the national renewable energy strategy, which is based on biomass supply. Biofuels for ethanol production may be produced in high-input crop production systems, but the efficacy of these systems for increasing net energy yields over its full life-cycle compared to traditional fuels is under debate, because it is now evident that the benefits of feedstock production are maximized only when biofuels are derived from feedstocks produced with much lower life-cycle greenhouse-gas emissions than traditional fossil fuels. To this end, the reduction of agricultural inputs is key to developing an effective biofuel feedstock …

Understanding Tradeoffs Between Food And Predation Risks In A Specialist Mammalian Herbivore, Jamie L. Utz, Lisa A. Shipley, Janet L. Rachlow, Tamara Johnstone-Yellin, Meghan Camp, Jennifer Sorenson Forbey

Biology Faculty Publications and Presentations

Understanding habitat use by animals requires understanding the simultaneous tradeoffs between food and predation risk within a landscape. Quantifying the synergy between patches that provide quality food and those that are safe from predators at a scale relevant to a foraging animal could better reveal the parameters that influence habitat selection. To understand more thoroughly how animals select habitat components, we investigated tradeoffs between diet quality and predation risk in a species endemic to sagebrush Artemisia spp. communities in North America, the pygmy rabbitBrachylagus idahoensis. This species is a rare example of a specialist herbivore that relies almost entirely …

Arsenite Resistance Of Euglena Mutabilis, Nicole Loumarinett Rosendo Mercado, Doug G. Cole (Mentor)

Idaho Conference on Undergraduate Research

Euglena are photosynthetic unicellular protozoa. Commonly found in rivers, lakes and ponds, some Euglena are found in toxic environments, like areas of acid mine drainage where they can grow at low pH and in the presence of heavy metals and metalloids such as arsenite (e.g. Euglena mutabilis). The goal of this research is to determine if an Idaho Euglena isolate (SG6) belongs to the E. mutabilis species and to compare it’s level of arsenite resistance with other E. mutabilis strains. As part of the methodology, we have developed microtiter plate assays in which the cells are …

Early-Onset Alzheimer’S: Should You Worry?, Troy Rohn

Biology Faculty Publications and Presentations

You have forgotten where you put your car keys, or you can’t seem to remember the name of your colleague you saw in the grocery store the other day. You fear the worst, that maybe these are signs of Alzheimer’s disease.

Proteolytic Cleavage Of Apolipoprotein E In The Down Syndrome Brain, Ryan J. Day, Katie L. Mccarty, Kayla E. Ockerse, Elizabeth Head, Troy T. Rohn

Biology Faculty Publications and Presentations

Down syndrome (DS) is one of the most common genetic causes of intellectual disability and is characterized by a number of behavioral as well as cognitive symptoms. Many of the neuropathological features of early-onset Alzheimer’s disease (AD) including senile plaques and neurofibrillary tangles (NFTs) are also present in people with DS as a result of triplication of the amyloid precursor gene on chromosome 21. Evidence suggests that harboring one or both apolipoprotein E4 (APOE4) alleles may increase the risk for AD due to the proteolytic cleavage of apoE4 and a subsequent loss of function. To investigate a role …

Mid- And Long-Term Effects Of Wildfire And Debris Flows On Stream Ecosystem Metabolism, Quenton M. Tuckett, Peter Koetsier

Biology Faculty Publications and Presentations

Wildfire is an important and prevalent agent of disturbance in vegetated landscapes across much of the Earth’s surface, including forested watersheds in the arid western USA. Between 1992 and 2003, >40% of the watersheds in the upper reaches of the Boise River watershed in central Idaho burned. The purpose of our study was to investigate the legacy effects of wildfire on stream ecosystems by analyzing the relationship between wildfire and resulting debris flows and their joint effects on stream ecosystem metabolism in 31 streams. The watersheds of ∼½ of these streams burned within the last 11 y, and some of …