Biology Commons^™

Ecosystem-Based Fisheries Management (Ebfm) Risk Assessment Of The Marine Aquarium Fish Managed Fishery 2014, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

Marine Aquarium Fish Resource Of Western Australia Harvest Strategy : 2018 – 2022 : Version 1.0, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

Status Update On The Threat Of Babesiosis Returning To The United States, Jason Tidwell, Christopher Vitek, Donald B. Thomas, John M. Thomas

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Babesiosis is a hemolytic disease caused by protozoan parasites in the genus Babesia, transmitted through the saliva of infected ticks. The most economically important species, Babesia bigemina and B. bovis, infect cattle and are the etiological agents of bovine babesiosis. In the southern United States, eradication efforts directed against the tick vectors, Boophilus spp., began in the early 1900s. A quarantine zone in south Texas along the US/Mexico border was subsequently established following the eradication of the disease in the US. The permanent quarantine zone, spanning approximately 33% of the total shared border between Texas and Mexico, has helped limit …

Parisitology Bio 231x, Michael Cerbo

Library Impact Statements

No abstract provided.

Information Has Value Webcast - The Utility Of Social Media For Teaching Information Literacy, Nora Belzowski, Kristi Bugajski

Library Faculty Publications

How to use inquiry-based learning techniques to teach the information literacy threshold concept Information Has Value to students in a science for non-majors biology course. The presenters also discussed the design, implementation, and assessment of a scalable lesson plan that addresses concepts and skills within the Information Has Value frame.

Pesticides And The Environment Ent 411/511, Michael Cerbo

Library Impact Statements

No abstract provided.

Comparison Of Two Ancient Dna Extraction Protocols For Skeletal Remains From Tropical Environments, Maria A. Nieves-Colon, Andrew T. Ozga, William J. Pestle, Andrea Cucina, Vera Tiesler, Travis W. Stanton, Anne C. Stone

Biology Faculty Articles

Objectives

The tropics harbor a large part of the world's biodiversity and have a long history of human habitation. However, paleogenomics research in these climates has been constrained so far by poor ancient DNA yields. Here we compare the performance of two DNA extraction methods on ancient samples of teeth and petrous portions excavated from tropical and semi‐tropical sites in Tanzania, Mexico, and Puerto Rico (N = 12).

Materials and Methods

All samples were extracted twice, built into double‐stranded sequencing libraries, and shotgun sequenced on the Illumina HiSeq 2500. The first extraction protocol, Method D, was previously designed for …

Yardwork: A Biography Of An Urban Place By Daniel Coleman, Vivian M. Hansen

The Goose

Review of Daniel Coleman's Yardwork: A Biography of an Urban Place.

Bubble Stream Production By Belugas (Delphinapterus Leucas), Megan Slack

Theses

Bubble stream production in belugas has been poorly characterized and its function is not well understood. I examined behavioral states when producing bubble streams (“bubbling”), and when bubbling calls, to determine whether bubbling was significantly associated with a particular call category or behavioral state. Using 19 hours of video and audio recordings collected over a two-day period, I quantified bubble streams of a 4-month old calf and an unrelated adult female housed together. Based on the overall activity budgets and pool of vocalizations for both animals, I calculated the expected counts of bubble streams with and without vocalizations, assuming that …

The Hero Organism And Heroism Science: A New Frontier Of Human Consciousness, Olivia Efthimiou

Heroism Science

In the context of a new science of heroism this article presents a brief history of the presence and study of heroism, and an outline of the key characteristics of the modern-day movement of heroism. The potentially wide-reaching impacts of the science of heroism are briefly discussed. The hypothesis of human beings as “hero organisms” is presented, before embarking on a discussion on what it means for each of us to be on our own hero’s journey.

The Search For A Hero Gene: Fact Or Fiction?, Olivia Efthimiou

Heroism Science

The radical entry of heroism research into scientific inquiry presents interesting challenges and possibilities for the study of heroism and the human condition more broadly. This ‘final frontier’ of the enduring phenomenon of heroism stands to offer remarkable, unprecedented, and controversial advances in our understanding of heroic and human behaviour. Is a genetic basis for heroism a real possibility? If so, what would its impacts be? Advances in genomics and increased interest in the fields of epigenetics and neuroplasticity might hold the key to its discovery. This article considers some of the leading emerging research in global health genomics and …

Functional Polymorphisms Of Alcohol Metabolism Genes And Their Protection Against Alcoholism Via Gene Therapy: A Systematic Review, Olivia Tzeng

Psychological Science Undergraduate Honors Theses

Around 45% of East Asians are unable to fully metabolize ethanol due to functional

polymorphisms of alcohol metabolism genes, specifically alcohol dehydrogenase (ADH) and aldehyde dehydrogenase (ALDH). These individuals display high levels of toxic blood acetaldehyde when consuming alcohol, causing symptoms such as tachycardia, vomiting, and flushing. The studies included in this review examine how functional polymorphisms of ADH and ALDH protect against alcoholism in addition to how polymorphisms can be utilized as protection against alcoholism via gene therapy. The studies included found that carriers of the ADH and ALDH polymorphisms were 66 to 99% genetically protected against alcoholism. Through …

Book Review - Coyote Settles The South, Cheryl Stiles

Georgia Library Quarterly

No abstract provided.

Differential Preservation Of Endogenous Human And Microbial Dna In Dental Calculus And Dentin, Allison E. Mann, Susanna Sabin, Kirsten Ziesemer, Ashild J. Vagene, Hannes Schroeder, Andrew T. Ozga, Krithivasan Sankaranarayanan, Courtney A. Hofman, James A. Fellows Yates, Domingo C. Salazar-Garcia, Bruno Frohlich, Mark Aldenderfer, Menno Hoogland, Christopher Read, George R. Milner, Anne C. Stone, Cecil M. Lewis Jr., Johannes Krause, Corinne Hofman, Kirsten I. Bos, Christina Warinner

Biology Faculty Articles

Dental calculus (calcified dental plaque) is prevalent in archaeological skeletal collections and is a rich source of oral microbiome and host-derived ancient biomolecules. Recently, it has been proposed that dental calculus may provide a more robust environment for DNA preservation than other skeletal remains, but this has not been systematically tested. In this study, shotgun-sequenced data from paired dental calculus and dentin samples from 48 globally distributed individuals are compared using a metagenomic approach. Overall, we find DNA from dental calculus is consistently more abundant and less contaminated than DNA from dentin. The majority of DNA in dental calculus is …

Hypocrisy And Corruption: How Disparities In Power Shape The Evolution Of Social Control, Omar T. Eldakar, J. Oliver Kammeyer, Nikhil Nagabandi, Andrew C. Gallup

Biology Faculty Articles

Altruism presents an evolutionary paradox, as altruistic individuals are good for the group yet vulnerable to exploitation by selfish individuals. One mechanism that can effectively curtail selfishness within groups is punishment. Here, we show in an evolutionary game-theoretical model that punishment can effectively evolve and maintain high levels of altruism in the population, yet not all punishment strategies were equally virtuous. Unlike typical models of social evolution, we explicitly altered the extent to which individuals vary in their power over others, such that powerful individuals can more readily punish and escape the punishment of others. Two primary findings emerged. Under …

Pearl Oyster (Pinctada Maxima) Resource Allocation Report : Prepared By The Integrated Fisheries Allocation Advisory Committee, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

A Novel On‐Chip Method For Differential Extraction Of Sperm In Forensic Cases, Fatih Inci, Mehmet O. Ozen, Yeseren Saylan, Morteza Miansari, Duygu Cimen, Raghu Dhara, Thiruppathiraja Chinnasamy, Mehmet Yuksekkaya, Chiara Filippini, Deepan Kishore Kumar, Semih Calamak, Yusuf Yesil, Naside Gozde Durmus, George Duncan, Leonard Klevan, Utkan Demirci

Biology Faculty Articles

One out of every six American women has been the victim of a sexual assault in their lifetime. However, the DNA casework backlog continues to increase outpacing the nation's capacity since DNA evidence processing in sexual assault casework remains a bottleneck due to laborious and time‐consuming differential extraction of victim's and perpetrator's cells. Additionally, a significant amount (60–90%) of male DNA evidence may be lost with existing procedures. Here, a microfluidic method is developed that selectively captures sperm using a unique oligosaccharide sequence (Sialyl‐LewisX), a major carbohydrate ligand for sperm‐egg binding. This method is validated with forensic mock samples dating …

The Y-Screen Assay: Validation And Evaluation Of Subsequent Str Success, Kassandra Luyando

Student Theses

There are hundreds of untested sexual assault kits in police custody. As of 2017, New York State passed a law stating that all untested kits must be turned over to forensic laboratories to be tested, causing backlogs at laboratories to increase. The Y-Screen assay is a DNA extraction protocol which utilizes NaOH to rapidly lyse epithelial and sperm cells, and the Quantifiler Trio DNA quantification kit to detect the presence or absence of male DNA prior to standard sample processing. The Y-Screen assay is a commercial product used in this research to test a defined set of validation samples with …

Radical Social Ecology As Deep Pragmatism: A Call To The Abolition Of Systemic Dissonance And The Minimization Of Entropic Chaos, Arielle Brender

Student Theses 2015-Present

This paper aims to shed light on the dissonance caused by the superimposition of Dominant Human Systems on Natural Systems. I highlight the synthetic nature of Dominant Human Systems as egoic and linguistic phenomenon manufactured by a mere portion of the human population, which renders them inherently oppressive unto peoples and landscapes whose wisdom were barred from the design process. In pursuing a radical pragmatic approach to mending the simultaneous oppression and destruction of the human being and the earth, I highlight the necessity of minimizing entropic chaos caused by excess energy expenditure, an essential feature of systems that aim …

Draft Management Plan For The Kimberley Crab Managed Fishery, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

Draft Management Plan For The Pilbara Crab Managed Fishery, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

Evaluating Implicit Self-Compassion In College Students, Emily Kutok

Senior Honors Projects

Typically, research on self-compassion and mental health has used the measurement tool of self-report (explicit) surveys to examine self-compassion. Implicit Association Tests (IAT) can be applied to a number of di erent constructs, some of which include racial biases, gender stereotypes, and suicidal ideation. ey are used to measure the strength of a person’s automatic association between two concepts (in this case, between self and compassion). By measuring implicit self-compassion, a researcher can expect less self-report bias related to self- presentational concerns and the limits of introspection, and they can capture psychological processes that occur without full conscious awareness but …

Evaluating In Situ Grazing Patterns Of Lytechinus Variegatus And Their Effects On Seagrass Beds Of Thalassia Testudinum, Adrianna Parson

Master of Science in Integrative Biology Theses

The sea urchin Lytechinus variegatus is a known grazer of the seagrass Thalassia testudinum, and has been known to denude vast stands of seagrass beds at high densities. Outside of these denudation events, the effects of sea urchins on seagrass are poorly understood. This study examines the effects of L. variegatus on T. testudinum in situ, to understand how sea urchins are affecting seagrasses in situ. Results indicate that urchins were found in the offshore portion of the seagrass bed at densities up to 4 urchins/m². Changes in temperature and sediment size in the bay indicate …

Salve Regina Arboretum Ten Year Plan To Reach Level Iii Accreditation, Jameson Chace, Helen Papp, Allyson Gilbert, Madeline Lark, Kyle Mcguire, Krysta Tsangarides, Madisen Archibald, Meghan Beals, Mackenzie Begley, Meagan Clickner, Makayla B. Cormier, Erin H. Donovan, Paige Dostie, Luke A. Gagnon, Micaela Griffin, Dana Johnson, Kunsang C. Lama, Kyle A. Macleod, Shannon A. Miller, Megan Moschetti, Amanda Munoz, Jennifer O'Connell, Erin O'Neill, Emily A. Riley, Alejandro C. Rojas, Ryan T. Senecal, Delaney A. Smith, Nicholas J. Sousa, Karolyne N. Stimpson, Sabrina Vieira, Mckenzie R. Wood

BIO 255 Conservation Biology

The Salve Regina University Arboretum, located in Newport, Rhode Island is currently registered as a Level II arboretum and is intertwined with the city of Newport Arboretum. The university now has intentions to reach Level III status, as part of a ten-year plan. This plan was developed by the students of the Spring 2018 BIO 255: Conservation Biology course, instructed by Dr. Jameson Chace, Associate Professor of biology at Salve Regina University. As part of a curriculum geared towards civic engagement, the class focused on creating and optimizing strategies that can be applied to the ten-year plan. These strategies were …

Social Play And The Development Of Temperament In Juvenile Belding’S Ground Squirrels (Urocitellus Beldingi), James Hurst-Hopf

Creative Activity and Research Day - CARD

We evaluated the hypothesis that social play behavior influences the development of temperament in young animals, using docility as a measure of temperament. We observed the play behavior of juvenile Belding’s ground squirrels (Urocitellus beldingi) during the developmental period in which play primarily occurs, and conducted behavioral tests measuring docility at the beginning and end of the play interval. Tests involved handling squirrels and recording their responses. Body mass was a reliable predictor of docility at the beginning of the play period. Rates of social play and maximum distances traveled from the natal burrow during the play interval were reliable …

Octopus Resource Of Western Australia Harvest Strategy : 2018 – 2022 : Version 1.0, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

Herpetofauna Of Sumak Allpa: A Baseline Assessment Of An Unstudied Island Herpetofaunal Community, Sara Freimuth

Independent Study Project (ISP) Collection

Sumak Allpa is an island dedicated to the provision and protection of habitat for the conservation and rehabilitation of primates. As such, the island - a varzea ecosystem located in the Western Amazon of Ecuador, one of the most biodiverse and also most threatened regions in the world – consists of protected primary forest that is home not only to a variety of primates, but also to an even wider variety of other taxa, nearly all of which have gone unstudied on the island. The present investigation assessed two of those taxa, amphibians and reptiles, in order to establish a …

Volume 10, Taylor Hogg, Tiffany Carter, Brandyn Johnson, Haleigh James, Josh Baker, Tyler Cernak, Kirsten Bauer, Allie Snavely, Mary Zell Galen, Eric Powell, Thomas Wise, Katie Kinsey, Beth Barbolla, Maeleigh Ferlet, Rebecca Morra, Michala Day, Alexandra Evangelista, Max Flores, Harley Hodges, Clardene Jones, Harrison Samaniego, Jamesha Watson, Abby Gargiulo, Heather Green, Haley Klepatzki, Juan Guevara, Dani Bondurant, Michael Joseph Link Jr., Pamela Dahl, Maeve Losen, Charlotte Murphey

Incite: The Journal of Undergraduate Scholarship

Introduction Dr. Roger A. Byrne

An Analysis of Media Framing in Cases of Violence Against Women by Taylor Hogg

Writing in the Discipline of Nursing by Tiffany Carter

Photography by Brandyn Johnson

The Hidden Life of Beef Cattle: A Study of Cattle Welfare on Traditional Ranches and Industrial Farms by Haleigh James

Bloodworth's by Josh Baker and Tyler Cernak

Prosimians: Little Bodies, Big Significance by Kirsten Bauer

Skinformed by Allie Snavely

Coopertition and Gracious Professionalism: The Effects of First Robotics Folklore and Culture on the Stem Community by Mary Zell Galen

Tilt by Eric Powell And Thomas Wise

The Millennial …

Chronic Administration Of Probiotic L. Rhamnosus Increases Anxiety-Like Behavior In Group-Housed Male Long Evans Rats, Parker Maddison Griff

Honors Theses

Early life stress is a risk factor for later development of alcohol use disorders and anxiety disorders in humans. Using rodent experimental models, we know that rats experiencing social isolation as early-life stress exhibit greater anxiety-like behavior and alcohol consumption than rats housed in groups. Examining potential preventive strategies, we investigated the effects of probiotics, which have previously been shown to decrease rodent anxiety-like behavior, on the relationship between early-life stress and anxiety-like behavior in rats. We hypothesized that probiotics consumption would decrease anxiety-like behavior in socially isolated rats, as well as in rats housed in groups. To our surprise, …

Blooming Mountains Of Biodiversity: An Investigation Of Angiosperms On Cerro Mayordomo, Tungurahua, Ecuador, Ella Matsuda

Independent Study Project (ISP) Collection

Ecuador is one of the most biodiverse places on the planet, and many of the species in the region are found nowhere else in the world. The cloud forest is particularly diverse because the mountainous terrain isolates populations and changes in elevation create a wide variety of habitats. Cerro Mayordomo is a relatively unexplored mountain in the cloud forest of Tungurahua, Ecuador. It is known to have very high levels of endemism and several new species have been discovered there, but the biodiversity of angiosperms on the mountain has never been quantified. In this study, 5x5 m quadrants were established …