Biology Commons^™

Cross-Talk Between The Tumor Suppressors Par-4 And P53, Tripti Shrestha Bhattarai

Theses and Dissertations--Toxicology and Cancer Biology

This work describes the fascinating interplay between two tumor suppressors Prostate apoptosis response-4 (Par-4) and p53. The guardian of the genome, p53, is frequently mutated in human cancers, and may contribute to therapeutic resistance. However, p53 is intact and functional in normal tissues, and we observed that specific activation of p53 in normal fibroblasts could induce apoptosis selectively in p53-deficient cancer cells. This paracrine apoptotic effect was executed by Par-4 secreted in response to p53 activation. Accordingly, activation of p53 in wild-type mice, but not in p53^-/- or Par-4^-/- mice, caused systemic elevation of Par-4 that induced apoptosis …

Antibodies To Pseudogymnoascus Destructans Are Not Sufficient For Protection Against White-Nose Syndrome, Joseph S. Johnson, Deeann M. Reeder, Thomas M. Lilley, Ken Field

Faculty Journal Articles

White-nose syndrome (WNS) is a fungal disease caused by Pseudogymnoascus destructans (Pd) that affects bats during hibernation. Although millions of bats have died from WNS in North America, mass mortality has not been observed among European bats infected by the fungus, leading to the suggestion that bats in Europe are immune. We tested the hypothesis that an antibody-mediated immune response can provide protection against WNS by quantifying antibod- ies reactive to Pd in blood samples from seven species of free-ranging bats in North America and two free-ranging species in Europe. We also quantified antibodies in blood samples from little brown …

An Examination Of Mathematical Models For Infectious Disease, David M. Jenkins

Williams Honors College, Honors Research Projects

Starting with the original 1926 formulation of the SIR (Susceptible-Infected-Removed) model for infectious diseases, mathematical epidemiology continued to grow. Many extensions such as the SEIR, MSIR, and MSEIR models were developed using SIR as a basis to model diseases in a variety of circumstances. By taking the original SIR model, and reducing the system of three first-order equations to a single first-order equation, analysis shows that the model predicts two possible situations. This analysis is followed by discussion of an alternative use of the SIR model which allows for one to track the amount of sustainable genetic variation in a …

The Effects Of Substrate Roughness In Air And Water On The Gecko Adhesive System, Amanda Palecek

Williams Honors College, Honors Research Projects

In an effort to better understand the fascinating gecko adhesive system, scientists have long tested the abilities of the gecko in controlled conditions that mimic the gecko’s native environment. The effects of humidity, environmental temperature, and exposure to water have all been tested. Roughness, however has not been studied in great detail. Surfaces of varying roughnesses are all over the gecko’s natural environment. We tested geckos on hydrophilic silicon carbide sandpapers of varying roughnesses in both air and water to attempt to better study the effects of roughness on gecko adhesion. When tested on the rougher (1 µm) surface, the …

Comparison Of Gastropod Assemblages From Natural And Phosphate Mine Lakes Of Central Florida, William A. Mailand

USF Tampa Graduate Theses and Dissertations

Investigations were made examining the relationships between gastropod species richness and abundance across 20 phosphate and 20 natural lakes in Central Florida. In additional to lake category, age of phosphate lakes was used to determine if phosphate lakes ever approximate natural lakes. Additional physical, chemical, and biological parameters, including chlorophyll a, Ca, secchi, phosphorous, conductance, fish predation, and recreational lake use were investigated in order to determine if they affected gastropods with lake age. Comparisons were also made between gastropod species richness and average abundance and two groups of dominant vegetation categories: Panicum, a structurally complex macrophyte, and Typha …

Impacts Of Agrochemical Pollution On Aquatic Communities And Human Disease, Neal T. Halstead

USF Tampa Graduate Theses and Dissertations

The global human population is expected to exceed 9 billion individuals by 2050, putting greater strain on the natural resources needed to sustain such a population. To feed this many people, some expect agricultural production will have to double and agrochemical use will have to increase anywhere from two- to five-fold relative to the turn of the century. Although industrial agriculture has provided many benefits to society, it has caused declines in biodiversity, both directly (e.g., through conversion of habitat) and indirectly (e.g., through contamination of adjacent natural habitats). Agricultural activity has also been linked to increased prevalence and intensity …

Human Anatomy And Physiology Preparatory Course (1st Edition), Carlos Liachovitzky

Open Educational Resources

The overall purpose of this preparatory course textbook is to help students familiarize with some terms and some basic concepts they will find later in the Human Anatomy and Physiology I course.

The organization and functioning of the human organism generally is discussed in terms of different levels of increasing complexity, from the smallest building blocks to the entire body. This Anatomy and Physiology preparatory course covers the foundations on the chemical level, and a basic introduction to cellular level, organ level, and organ system levels. There is also an introduction to homeostasis at the beginning.

The Effects Of Lampricide 3-Trifluoromethyl-4-Nitrophenol Toxicity On The Gills Of Larval Sea Lamprey And Non-Target Rainbow Trout And Lake Sturgeon, Lisa A. Sorensen

Theses and Dissertations (Comprehensive)

The pesticide, 3-trifluoromethyl-4-nitrophenol (TFM), is widely used in the Great Lakes to control invasive sea lampreys (Petromyzon marinus) populations, but much about its sub-lethal effects remains unknown. A better understanding of its toxicity is needed to improve TFM effectiveness and to protect non-target organisms from its potential adverse effects. The objectives of this thesis were to test the following two hypotheses: (1) impairment of mitochondrial ATP production by TFM interferes with ATP-dependent ion-uptake by fish, leading to altered electrolyte balance, and (2) perturbations of gill function by TFM are exacerbated in soft, ion poor water (SW; 40 mg …

Purification And Characterization Of Bcsc; An Integral Component Of Bacterial Cellulose Export, Emily D. Wilson Ms

Theses and Dissertations (Comprehensive)

Biofilms are a growing concern in the medical field due to their increased resistance to antibiotics. When found in a biofilm, bacteria can have antibiotic resistance 10-1000 times that of their planktonic counterparts. Therefore, it is important to study the formation of biofilms. Cellulose biofilms are formed by Enterobacteriaceae, such as many Escherichia coli and Salmonella spp. strains. Biofilms provide these species with benefits including antimicrobial protection, development of bacterial communities, promotion of DNA exchange, uptake of nutrients, and, in the case of cellulose biofilms, immune system evasion. Cellulose biofilms are controlled by the Bacterial cellulose synthesis (Bcs) complex located …

Developing A Site Specific Understanding Of The Toxicity Of Rare Earth Elements, Cerium And Dysprosium, To Daphnia Pulex And Hyalella Azteca, Oliver Vukov

Theses and Dissertations (Comprehensive)

Rare earth elements (REEs) are a group of similarly reactive metals that are divided into two groups; the light (LREEs) and heavy (HREEs) rare earths. These metals are used in a variety of industries and are critical to the function of modern society. The demand for REEs is expected to increase and as a result new mining projects are being developed with a potential for future mining in Canada. The toxicological understanding of these metals in the aquatic environment is very limited. The objective of this research is to compare the toxicological effect of REEs to the freshwater invertebrates Daphnia …

Consequences Of Vine Infestation: Linking Abiotic Influences And Biotic Interactions To Successional And Structural Changes In Coastal Communities, Spencer N. Bissett

Theses and Dissertations

Located at the interfaces of terrestrial and marine environments, coastal habitats are inherently vulnerable to the effects of global change. Barrier island systems in particular serve not only as protective buffers against storm events, but also as sentinel ecosystems for observation of the impacts of sea level rise, and of increasing storm frequency and intensity. In the mid-Atlantic region, shrub thickets of Morella species compose the dominant forest community. The often monospecific nature of these plant community assemblages is advantageous to ecological studies and cross-scale applications; the relatively low diversity facilitates transitions between scales. My objective was to investigate the …

Modeling Atp-Binding Cassette G2 (Abcg2) Substrate Specificity, Raghav D. Acharya, Aurijit Sarkar, Glen E. Kellogg

UROP Posters

How well can we predict efflux by ATP-binding cassette G2?

It is estimated that there will be about 1.6 million new cases of cancer and half a million cancer deaths in the US during 2015.ATP-binding cassette (ABC) efflux transporters such as ABCG2 are overexpressed in chemotherapy-resistant cancer cells. Anticancer drugs are prone to efflux by these transporters. Being able to identify drugs that are effluxed is of great interest in drug discovery.The current arsenal of methods used to detect efflux are not easily adaptable to high throughput formats and are limited in scope, making experimental analysis an expensive prospect. Hence, …

Understanding The Physiological Effects Of Suspended Material On Rainbow Trout (Oncorhynchus Mykiss), Tyler J. Weinhardt

Theses and Dissertations (Comprehensive)

The effect of global warming on northern environments is becoming increasingly evident. Melting of underlying permafrost is associated with widespread impacts in these environments. The loss of permafrost results in a destabilizing of underlying sedimentary layers resulting in thermokarst slumping. When this occurs on a large scale (mega-slumping) soil material becomes mobilized and is carried into local streams and rivers. The purpose of this study is to examine the sub-lethal physiological effects that suspended material has on rainbow trout (Oncorhynchus mykiss) in the context of the Peel River Plateau. Juvenile rainbow trout were exposed (following Environment Canada exposure …

Impact Of Biofilm Formation And Composition On Antibiotic Resistance In Environmental Isolates Of Escherichia Coli And Salmonella Spp., Raluca Tutulan

Theses and Dissertations (Comprehensive)

Escherichia coli and Salmonella spp., like most bacteria, prefer to grow in biofilms. These biofilms provide bacteria with protection from harsh environmental factors (such as desiccation and changes in pH), aid in the evasion of host immune responses and provide increased antibiotic resistance. Biofilms are present in non-host environments (e.g. water pipes) as well as in mammalian hosts (in the healthy gastrointestinal microbiota and in over 65% of nosocomial infections). Two important components utilized by E. coli and Salmonella spp. to form biofilms are cellulose and curli fimbriae. Curli fimbriae mediate the attachment of bacteria to abiotic surfaces and …

Molecular Identification And Functional Characteristics Of Peptide Transporter 1 (Pept1) In The Bonnethead Shark (Sphyrna Tiburo), Hannah Hart

UNF Graduate Theses and Dissertations

Many elasmobranchs are considered top predators with worldwide distribution, and in general these fish play an important role in the transfer of energy from the lower to the upper trophic levels within the marine ecosystem. Despite this, little research has been done regarding the rates of prey ingestion, digestion, and the processes of energy and nutrient absorption. Specifically understudied is enzymatic digestion within the intestinal brush border, which functions to break down macromolecules into smaller subunits for luminal absorption across the gastrointestinal epithelium. Given their carnivorous diet, the present study sought to expand knowledge on nutrient intake in elasmobranchs by …

Speed And Resolution In The Age Of Technological Reproducibility, Shawn Taylor

Theses and Dissertations

The rate of acceleration of the biologic and synthetic world has for a while now, been in the process of exponentially speeding up, maxing out servers and landfills, merging with each other, destroying each other. The last prehistoric relics on Earth are absorbing the same oxygen, carbon dioxide and electronic waves in our biosphere as us. A degraded .jpeg enlarged to full screen on a Samsung 4K UHD HU8550 Series Smart TV - 85” Class (84.5” diag.). Within this composite ecology, the ancient limestone of the grand canyon competes with the iMax movie of itself, the production of Mac pros, …

Characterization Of A Putative Phospholipase D ´ Like Gene As A Lipid Signaling Modulator And Its Role In Salicylic Acid Mediated Defense Pathway In Nicotiana Tabacum, Phillip T. Dean

Electronic Theses and Dissertations

Plants are in a perpetual evolutionary arms race with a wide range of pathogens. Their sessile nature has led plants to evolve defense mechanisms that can quickly recognize a unique stressor and deploy a resistance tailored for a specific attack. The salicylic acid (SA) mediated defense pathway has been shown to be one of the major defense tactics plants can initiate to defend themselves against microbial pathogens. Following a pathogen attack high levels of methyl salicylate (MeSA) are produced that can be converted to SA by the enzyme salicylic acid binding protein 2 (SABP2). A yeast two-hybrid screening was performed …

Functional Morphology And Feeding Mechanics Of Billfishes, María Laura Habegger

USF Tampa Graduate Theses and Dissertations

Billfishes (marlins, spearfishes, sailfishes and swordfish) are one of the fastest and largest marine apex predators, and perhaps their most recognizable attribute is their bill or rostrum. The proposed function for this novel structure has ranged from hydrodynamic enhancement to defensive weaponry. However, the most supported hypothesis for its function has been linked to feeding. Billfishes have been observed to subdue their prey with their rostrum, either stunning or cutting them into pieces before ingestion. Due to their large body sizes and pelagic lifestyles a thorough investigation of the function of this structure has been logistically challenging. The goal of …

Influences Of Yard Management Intensity On Urban Soil Biogeochemistry, Viviana Penuela Useche

USF Tampa Graduate Theses and Dissertations

Soils are critical to ecosystem function as they provide essential nutrients for primary producers, habitat and organic energy for decomposers, and storage of organic matter. Irrigation with reclaimed water is an increasingly popular water conservation strategy; yet its high salinity and nutrient content potentially affect soil properties. In this study, set in a residential neighborhood of Tampa (U.S.). I tested whether there are distinct lawn system management strategies characterized by systematic differences in reclaimed water usage and irrigation and fertilization practices. I then investigated whether soil biogeochemistry responds to lawn system management strategy.

My results indicated that amendment strategy, which …

Induced Phytoextraction Of Lead From Contaminated Urban Soil Through Manipulation Of Rhizosphere And Plant Biogeochemical Functions In Switchgrass (Panicum Virgatum), Deayne M. Johnson

Master of Science in Integrative Biology Theses

Contamination of soils with lead (Pb) continues to pose a risk to the health of humans especially in residential urban areas. Remediation of these soils is necessary to reduce the amount of Pb and alleviate risk to human health. Phytoextraction of Pb through chemically induced accumulation of Pb in the harvestable foliage and removal of contaminated plant material has great potential in offering a solution to this environmental problem. The effects of the combined application of a soil fungicide (benomyl), synthetic chelates (ethylenediamineteteraacetic acid, EDTA), and foliar-Fe supplement on lead (Pb) phytoextraction from contaminated soil by switchgrass (Panicum virgatum) was …

Genomic Characterization Of Polyps In Familial Adenomatous Polyposis Patients And Identification Of Candidate Chemopreventive Drugs, Francis A. San Lucas

Dissertations and Theses (Open Access)

Familial adenomatous polyposis (FAP) is an autosomal dominant disease characterized by APC germline mutations and the development of hundreds to thousands of premalignant adenomas in the gastrointestinal tract at a young age. If left untreated, these patients inevitably develop colon cancer (CRC) and small bowel tumors. We performed exome sequencing of samples from 12 FAP patients to characterize adenomas and to identify candidate genes of adenoma development that may serve as potential targets for chemoprevention drug development. From each patient, a blood and at least one polyp were sequenced with a total of 25 polyps analyzed. In some cases, normal …

Water Use And Water Tolerance In The Riparian Species American Sycamore (Plantanus Occidentalis L.) And How Its Physiology Compares To The Coexisting Black Willow (Salix Nigra Marshall), Eric Duncan

Dissertations, Theses and Capstone Projects (Full IR Collection)

This study set out to compare aspects of water use and tolerance to inundation and drought of two riparian tree species, Platanus occidentalis L. and Salix nigra Marshall. The main goal of the study was to better understand the two species and assess the suitability of P. occidentalis for use in riparian restoration. To accomplish this, potted individuals were subjected to treatments of drought, inundation, or control, under greenhouse conditions, and separately, in order to estimate water use in trees, season-long diurnal measurements of sap flux (using Granier type thermal dissipation probes) were determined in situ for trees growing in …

Phenotypic Analysis Of The Regulatory Role Of The Leucine-Responsive Regulatory Protein (Lrppa) In Pseudomonas Aeruginosa, Stephanie D. Larson

Master of Science in Integrative Biology Theses

Nutrient acquisition is critical to survival and infection by the opportunistic bacterium Pseudomonas aeruginosa. This pathogen expresses a number of virulence factors that are a part of the starvation response and are important in host-pathogen interactions. Additionally, P. aeruginosa is resistant to a large number of antibiotics and has become difficult to treat once it has colonized a tissue. New pharmaceutical treatments are sought while the metabolism of this organism must be fully understood to select new targets for therapy. The leucine- responsive regulatory protein (Lrp) could be a promising target for treatment. The ortholog in Escherichia coli is …

Nitrogen Inputs And Losses In Response To Chronic Co2 Exposure In A Subtropical Oak Woodland, B. A. Hungate, B. D. Duval, P. Dijkstra, D. W. Johnson, M. E. Ketterer, Peter Stiling, W. Cheng, J. Millman, A. Hartley, D. B. Stover

Integrative Biology Faculty and Staff Publications

Rising atmospheric CO₂ concentrations may alter the nitrogen (N) content of ecosystems by changing N inputs and N losses, but responses vary in field experiments, possibly because multiple mechanisms are at play. We measured N fixation and N losses in a subtropical oak woodland exposed to 11 years of elevated atmospheric CO₂ concentrations. We also explored the role of herbivory, carbon limitation, and competition for light or nutrients in shaping the response of N fixation to elevated CO₂. Elevated CO₂ did not significantly alter gaseous N losses, but lower recovery and deeper distribution in the …

The Role Of Sirtuin Inhibitors On The Proteomic Responses Of The Mussels Mytilus Galloprovincialis And Mytilus Trossulus To Menadione Induced Oxidative Stress, Hayley C. Chilton

Master's Theses

Global climate change imposes physiological constraints on marine ecosystems that can alter the distribution of intertidal organisms. In one such instance, the native cold-adapted mussel Mytilus trossulus is being replaced along its southern range by the invasive warm-adapted Mytilus galloprovincialis. These blue mussels occur throughout rocky intertidal zones where they are subjected to greatly varying environmental conditions known to induce oxidative stress. We hypothesize that while under acute stress, related Mytilus congeners undergo a shift in redox potential from NADH-fueled respiratory pathways to pathways producing NADPH as a way to decrease the production of reactive oxygen species (ROS) and …

Differences In The Communicative Behavior And Neurobiology Of Chimpanzees (Pan Troglodytes) And Bonobos (Pan Paniscus), Brittany Moore

Master of Science in Integrative Biology Theses

Chimpanzees and bonobos have distinctly different vocalizations, but it is unclear why these differences have evolved. We hypothesized that differences in habitat and feeding ecology have selected for bonobos to have an increased reliance on vocal communication compared to chimpanzees. To evaluate this hypothesis 1571 chimpanzee vocal events and 612 bonobo vocal events were analyzed. After analyzing and coding video of communicative interactions it was determined that chimpanzees are more likely than bonobos to utilize multimodal communication and to direct vocalizations to an individual conspecific. Bonobos were more likely than chimpanzees to produce a vocalization that was not bound to …

Assessing The In Situ Fertilization Status Of Two Marine Copepod Species, Temora Longicornis And Eurytemora Herdmani; How Common Are Unfertilized Eggs In Nature?, Rachel S. Lasley-Rasher, Andrew M. Kramer, Victoria Burdett-Coutts, Jeannette Yen

Integrative Biology Faculty and Staff Publications

We utilized an egg staining technique to measure the in situ fertilization success of two marine copepod species, Temora longicornis and Eurytemora herdmani from May to October 2008 in coastal Maine and correlated fertilization success with environmental conditions in their habitat. T. longicornis is a free spawning species that releases eggs into the ambient seawater after mating. In contrast, E. herdmani carries eggs in an egg sac until they hatch. The proportion of fertilized eggs within E. herdmani egg sacs was significantly higher than the freely spawned clutches of T. longicornis. This may be a result of the asymmetrical costs …

Time To Competitive Exclusion, Andrew M. Kramer, John M. Drake

Integrative Biology Faculty and Staff Publications

A predictive theory of population extinction for natural populations requires integrating the effects of stochasticity with the interactions engaged in with populations of other species. The theory of competitive exclusion predicts that inferior competitors for a limiting resource will be driven to extinction, but the effects of resource competition on time to extinction have not been examined. We studied a stochastic version of Tilman's resource competition model to examine two species competition-driven extinction. Simulations showed that competitive imbalance, population size and demographic rates of the “inferior” competitor were the most important determinants of mean extinction time, while factors including resource …

Selections On The Empirical And Theoretical Investigations Of Behavioral Variability: An Introduction To The Special Issue, W. David Stahlman, Aaron P. Blaisdell

Psychological Science Articles

The study of behavioral variability continues to grow in importance and gather interest. A thorough understanding of the fundamental processes by which variation is generated and by which it is adaptive is potentially important to our understandings of a whole host of phenomena, including all types of learning, from basic skills to language and thought (Bateson & Martin, 2013) as well as the antifragility of complex systems (Taleb, 2012). This issue represents a brief look into an important scientific enterprise, extraordinarily vast in scope and implications (Brembs, 2010). Even if we accept a fundamental unpredictability to animal behavior, this does …

Comparative Analysis Of Selected Model Species Used In Intervertebral Disc Research, Lauren A. Monaco

Theses and Dissertations (Comprehensive)

Animal models are frequently used in place of human specimens to study the progression of injury and/or disease of the intervertebral disc (IVD). This project aimed to compare the geometry, hydration, histology, and mechanical properties of selected animal models: bovine (cow) tail, porcine (pig) lumbar, and ovine (sheep) lumbar IVDs. X-ray images were taken and used to determine the anterior, posterior, and lateral IVD and vertebral heights in order to calculate IVD: vertebral height ratios. Water content was determined by comparing IVD weight before (wet weight) and after (dry weight) 24 hours of incubation at 65°C. Mechanical properties …