Biology Commons^™

Water Flow And Biofilm Cover Influence Environmental Dna Detection In Recirculating Streams, Arial Shogren, Jennifer L. Tank, Scott P. Egan, Olivia August, Emma J. Rosi, Brittany R. Hanrahan, Mark A. Renshaw, Crysta A. Gantz, Diogo Bolster

Environmental Science and Management Faculty Publications and Presentations

The increasing use of environmental DNA (eDNA) for determination of species presence in aquatic ecosystems is an invaluable technique for both ecology as a field and for the management of aquatic ecosystems. We examined the degradation dynamics of fish eDNA using an experimental array of recirculating streams, also using a “nested” primer assay to estimate degradation among eDNA fragment sizes. We introduced eDNA into streams with a range of water velocities (0.1–0.8 m s–1) and substrate biofilm coverage (0–100%) and monitored eDNA concentrations over time (∼10 d) to assess how biophysical conditions influence eDNA persistence. We found that the presence …

Identifying Marine Key Biodiversity Areas In The Greater Caribbean Region, Michael S. Harvey

Biological Sciences Theses & Dissertations

Anthropocene biodiversity extinction rates are increasing, suggesting a possible sixth global mass extinction event. Biological conservation planners are consequently seeking ways to more effectively protect species at national, regional and global scales. In 2010, the Convention on Biological Diversity (CBD) issued a number of conservation goals (Aichi Targets), including the establishment of protected areas (PA) in terrestrial, freshwater and marine areas of eminent conservation concern by 2020 to reduce and eventually eliminate species’ extinctions, as well as preserve hotspots of biodiversity and dynamic ecosystems. While well-established, adequately enforced PAs increase the likelihood of preserving species and habitats most at risk …

Potential Interaction Analysis Of Offshore Wind Energy Areas And Breeding Avian Species On The Us Mid-Atlantic Coast, Jeri Lynn Wisman

Biological Sciences Theses & Dissertations

Due to increasing US interest in developing wind energy sites in offshore waters, we synthesized existing data on colonial breeding seabird populations with the potential risk of interacting with lease areas in the mid-Atlantic. Previous efforts by BOEM and NOAA have predicted avian density using at-sea survey data; we seek to complement this work by focusing specifically on birds during the critical and energetically demanding breeding life history stage. We combined colony size and location for each species along the mid-Atlantic coast with buffers around the colonies that correlate with the species’ foraging range. We integrated population size, vulnerability to …

Inventory Of Oceanic Fauna Data Including Species, Weight, And Measurements From R/V Point Sur (Cruise Dp05) In The Gulf Of Mexico From 2017-05-01 To 2017-05-11, April Cook, Tracey Sutton

DEEPEND Datasets

This dataset includes an inventory of Gulf of Mexico oceanic fauna data including species, weight, and measurements collected from R/V Point Sur (Cruise DP05) from 2017-05-01 to 2017-05-11. The main gear type used was a 10-m2 Multiple Opening Closing Net and Environmental Sensing System (MOCNESS). The MOCNESS was fitted with 6 nets which were opened according to the following depth scheme: net 0 from the surface to 1500m, net 1 from 1500-1200m, net 2 from 200-1000m, net 3 from 1000-600m, net 4 from 600-200m, and net 5 from 200m to the surface. Two trawls were conducted at each station sampled …

Radical Social Ecology As Deep Pragmatism: A Call To The Abolition Of Systemic Dissonance And The Minimization Of Entropic Chaos, Arielle Brender

Student Theses 2015-Present

This paper aims to shed light on the dissonance caused by the superimposition of Dominant Human Systems on Natural Systems. I highlight the synthetic nature of Dominant Human Systems as egoic and linguistic phenomenon manufactured by a mere portion of the human population, which renders them inherently oppressive unto peoples and landscapes whose wisdom were barred from the design process. In pursuing a radical pragmatic approach to mending the simultaneous oppression and destruction of the human being and the earth, I highlight the necessity of minimizing entropic chaos caused by excess energy expenditure, an essential feature of systems that aim …

A Comparison Of Salinity Effects From Hurricanes Dolly (2008) And Alex (2010) In A Texas Lagoon System, Joseph L. Kowalski, Hudson R. Deyoe, Gilbert H. Boza Jr., Donald L. Hockaday, Paul V. Zimba

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

A comparison of salinity effects from hurricanes Dolly (2008) and Alex (2010) in a Texas lagoon system.Hurricanes are not uncommon along the Gulf of Mexico coast, but there are few studies of the effects they have on coastal embayments. Hurricanes Dolly (2008) and Alex (2010) were both Category 2 storms affecting the Lower Laguna Madre (LLM) of Texas. Surveys were performed to assess poststorm water quality after landfall of both storms at up to 18 sample stations. The main difference between storm effects was salinity reduction because of stormwater input from the watershed. Effects from Hurricane Dolly were of short …

Animal Agriculture And American Health: The Search For Sustainable Protein, Britta Brinkmann

Biology: Student Scholarship & Creative Works

This study examines the impact large-scale animal agriculture has on the environment. It links the environment and health. The goal is to find protein sources that are sustainable and nutritious in order to replace typical meat and dairy products. A study is proposed to measure the impact of the typical American diet, a vegan diet, an insect-supplemented diet and a diet heavy in seafood.

Population Characteristics Of A Closed Northern Pike (Esox Lucius) Catch-And-Release Population In Minnesota, John Kempe

Biology Graduate Theses

Literature regarding catch-and-release populations of Northern Pike are rare and provide a unique perspective on their population dynamics. Shingobee Lake is a 64- ha mesotrophic lake with a maximum depth of 12.2 m located in northern Minnesota. Northern Pike fishing has been catch-and-release only since 2005, and there are no public accesses on the lake. Annual ice-out trap-netting occurred from 2009-2017, and a sizable amount of the Northern Pike recaptured via trapnet or angling had been previously tagged (37-59%). The lack of exploitation and high tagging percentage provided a unique opportunity to study the population dynamics of Northern Pike. Shinogbee’s …

Breeding Season Ecology And Demography Of Lesser Scaup (Aythya Affinis) At Red Rock Lakes National Wildlife Refuge, Jeffrey M. Warren

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

It is hypothesized that individuals make reproductive decisions based on current assessments of their physiological condition and environmental conditions. For female lesser scaup (Aythya affinis), breeding occurs after an energetically costly spring migration. Increasing fat reserves (i.e., ‘body condition’) prior to breeding allows a female to produce a larger clutch of eggs, but time spent gaining body condition is costly in terms of time allowed to raise ducklings before freezing conditions in the fall. In Chapter 2 I explored rate of pre-breeding body condition gain in female lesser scaup, and how that rate influenced clutch size. Spring phenology, …

Evaluating The Impact Of Eastern Hemlock Decline On Louisiana Waterthrush Demographics And Behavior In Great Smoky Mountains National Park, Lee Cotten Bryant

Student Theses and Dissertations

Eastern hemlock (Tsuga canadensis) is declining throughout the eastern United States due to the invasive hemlock woolly adelgid (Adelges tsugae Annand). In the southern Appalachians, hemlock is concentrated in moist ravines and its loss threatens riparian specialists and habitat quality. The Louisiana waterthrush (Parkesia motacilla) is an obligate-riparian species that could be sensitive to hemlock condition in the southern Appalachians, but how hemlock decline might impact it is currently unknown. I addressed this knowledge gap by evaluating relationships between hemlock decline and waterthrushes. First, I evaluated the ultimate effects hemlock decline could have on waterthrushes, focusing on survival and habitat …

2018 3rd Place: The Growth And Characterization Of Psychromonas Aquimarina, A New Model Organism For Climate Change, Carrie Carpenter, Catherine Santai

Harrisburg University Research Symposium (2018 & 2019)

Climate change is currently affecting the Earth and will only increase with time1. A change to the environment means that wildlife will need to adapt. Adaptation occurs when an organism changes physiologically or otherwise to permit continued growth in the environment in which it resides. Scientists do not completely understand adaptation mechanisms. Psychromonas aquimarinais a novel bacterium, with little known. This bacteria will first be characterized and studied before conducting temperature studies. Psychromonas aquimarina is a psychrophile, a bacterium able to survive in colder regions where most bacteria would not. P. aquimarinais an ideal bacterium to study because climate change …

Gymnosperms On The Edge, Félix Forest, Justin Moat, Elisabeth Baloch, Neil A. Brummitt, Steve P. Bachman, Steffi Ickert-Bond, Peter M. Hollingsworth, Aaron Liston, Damon P. Little, Sarah Mathews, Hardeep Rai, Catarina Rydin, Dennis W. Stevenson, Philip Thomas, Sven Buerki

Wildland Resources Faculty Publications

Driven by limited resources and a sense of urgency, the prioritization of species for conservation has been a persistent concern in conservation science. Gymnosperms (comprising ginkgo, conifers, cycads, and gnetophytes) are one of the most threatened groups of living organisms, with 40% of the species at high risk of extinction, about twice as many as the most recent estimates for all plants (i.e. 21.4%). This high proportion of species facing extinction highlights the urgent action required to secure their future through an objective prioritization approach. The Evolutionary Distinct and Globally Endangered (EDGE) method rapidly ranks species based on their evolutionary …

Moss Revegetation- A Process To Initiate Restoration And Repair Natural Resources Damaged By Mining, Arundeep Taduri

Graduate Theses & Non-Theses

Mosses are small plants within the phylum Bryophyta known for their ability to grow on acidic, metal laden soil. This project proposes the restoration of moss to barren mine waste areas which will stabilize the soil, thus reducing heavy metal contaminants released to the aquifer and the surrounding environment.

In general, the mine waste areas can be naturally recolonization by native and non-native vegetation as a remediation process. This process is very slow. The removal of the mine waste, capping and replacing it with clean soil, and subsequently replanting is a common remediation method. However, this approach is very expensive …

Volume 10, Taylor Hogg, Tiffany Carter, Brandyn Johnson, Haleigh James, Josh Baker, Tyler Cernak, Kirsten Bauer, Allie Snavely, Mary Zell Galen, Eric Powell, Thomas Wise, Katie Kinsey, Beth Barbolla, Maeleigh Ferlet, Rebecca Morra, Michala Day, Alexandra Evangelista, Max Flores, Harley Hodges, Clardene Jones, Harrison Samaniego, Jamesha Watson, Abby Gargiulo, Heather Green, Haley Klepatzki, Juan Guevara, Dani Bondurant, Michael Joseph Link Jr., Pamela Dahl, Maeve Losen, Charlotte Murphey

Incite: The Journal of Undergraduate Scholarship

Introduction Dr. Roger A. Byrne

An Analysis of Media Framing in Cases of Violence Against Women by Taylor Hogg

Writing in the Discipline of Nursing by Tiffany Carter

Photography by Brandyn Johnson

The Hidden Life of Beef Cattle: A Study of Cattle Welfare on Traditional Ranches and Industrial Farms by Haleigh James

Bloodworth's by Josh Baker and Tyler Cernak

Prosimians: Little Bodies, Big Significance by Kirsten Bauer

Skinformed by Allie Snavely

Coopertition and Gracious Professionalism: The Effects of First Robotics Folklore and Culture on the Stem Community by Mary Zell Galen

Tilt by Eric Powell And Thomas Wise

The Millennial …

The Critically Endangered Forest Owlet Heteroglaux Blewitti Is Nested Within The Currently Recognized Athene Clade: A Century-Old Debate Addressed, Pankaj Koparde, Prachi Mehta, Sushma Reddy, Uma Ramakrishnan, Shomita Mukherjee, V. V. Robin

Biology: Faculty Publications and Other Works

Range-restricted species generally have specific niche requirements and may often have unique evolutionary histories. Unfortunately, many of these species severely lack basic research, resulting in poor conservation strategies. The phylogenetic relationship of the Critically Endangered Forest Owlet Heteroglaux blewitti has been the subject of a century-old debate. The current classifications based on non-phylogenetic comparisons of morphology place the small owls of Asia into three genera, namely, Athene, Glaucidium, and Heteroglaux. Based on morphological and anatomical data, H. blewitti has been alternatively hypothesized to belong within Athene, Glaucidium, or its own monotypic genus Heteroglaux. …

Effects Of Elevated Co2, Increased Nitrogen Deposition, And Plant Diversity On Aboveground Litter And Root Decomposition, Xiaoan Zuo, Johannes Knops

School of Biological Sciences: Faculty Publications

Global change-induced litter decomposition strongly affects the carbon (C) and nitrogen (N) dynamics in grassland ecosystems. However, few studies show the interactive effects of global change factors on litter and root decomposition. We conducted a four-year grassland field experiment to examine the quality and decomposition of litter and root in a three-factorial experiment with elevated CO₂, increased N deposition, and plant species richness. We found that elevated CO₂ decreased the litter N content and root lignin content. N addition increased the root N content and decreased the litter lignin content. Increasing plant richness decreased the N and …

Mapping The Yearly Extent Of Surface Coal Mining In Central Appalachia Using Landsat And Google Earth Engine, Andrew A. Pericak, Christian J. Thomas, David A. Kroodsma, Matthew F. Wasson, Matthew R.V. Ross, Nicolas E. Clinton, David J. Campagna, Yolandita Franklin, Emily S. Bernhardt, John F. Amos

Faculty & Staff Scholarship

Surface mining for coal has taken place in the Central Appalachian region of the United States for well over a century, with a notable increase since the 1970s. Researchers have quantified the ecosystem and health impacts stemming from mining, relying in part on a geospatial dataset defining surface mining’s extent at a decadal interval. This dataset, how- ever, does not deliver the temporal resolution necessary to support research that could establish causal links between mining activity and environmental or public health and safety outcomes, nor has it been updated since 2005. Here we use Google Earth Engine and Landsat imagery …

Salt Retention In Wetland Soils And Effects On Dissolved Organic Carbon Export, Kayla Marie Mcguire

Master's Theses and Doctoral Dissertations

Deicing salt runoff has negative effects on ecosystems. Wetland ecosystems can act as important filters for runoff pollution (e.g., nutrients), mitigating damage to plants and microbes. Wetlands are important sinks for nutrients and pollutants (e.g., road salt) and transformation spots for many nutrients including carbon. The interactions between deicing salt runoff and wetland soil carbon were explored by measuring chloride export and retention, dissolved organic carbon (DOC) export, and carbon quality using mesocosm experiments. Net retention of Cl- was highest in soils receiving high salt treatments (5.0 g/L NaCl), although percent retention of Cl- was greater in soils receiving moderate …

Ms Environmental Biology Capstone Project, Annamaria Marcel

Regis University Student Publications (comprehensive collection)

Due to the worldwide decline of biodiversity, protected nature reserves are necessary for species facing extinction. Many frog species have been experiencing rapid population decline and extinction due to the threat of the fungus Batrachochytrium dendrobatidis (Bd), which inflicts the highly transmittable and deadly disease chytridiomycosis. Chytridiomycosis causes increased skin tissue growth which disrupts respiration and the maintenance of water balance, which can ultimately lead to death. Certain ecological and geographical characteristics have been studied in order to assess their influence on Bd’s prevalence. Specifically, it is hypothesized that high elevations, lotic habitats, and low species richness have a positive …

Growth Rate And Hatch Date Of Age-0 Fishes On Leech Lake, Minnesota Before Zebra Mussel Establishment, Kayla Morey, Emily Larson

Journal of Earth and Life Science

The introduction of an invasive species to an ecosystem is considered a very severe environmental problem. Zebra Mussel veligers Dreissena polymorpha have recently been found in Leech Lake, Minnesota, and are likely going to have a large influence on this ecosystem. Zebra Mussels are filter-feeders that rely on phytoplankton and zooplankton as their main source of energy. A shift in populations of plankton due to Zebra Mussels may affect the growth rates of larval fish. Median hatch dates and growth rates were estimated from four age-0 fish species (Yellow Perch Perca flavescens, Walleye Sander vitreus, Smallmouth Bass Micropterus …

Standing Dead Trees Are A Conduit For The Atmospheric Flux Of Ch4 And Co2 From Wetlands, Mary Jane Carmichael, Ashley M. Helton, Joseph C. White, William K. Smith

Biology Faculty Scholarship

In vegetated wetland ecosystems, plants can be a dominant pathway in the atmospheric flux of methane, a potent greenhouse gas. Although the roles of herbaceous vegetation and live woody vegetation in this flux have been established, the role of dead woody vegetation is not yet known. In a restored wetland of North Carolina’s coastal plain, static flux chambers were deployed at two heights on standing dead trees to determine if these structures acted as a conduit for methane emissions. Methane fluxes to the atmosphere were measured in five of the chambers, with a mean flux of 0.4±0.1 mg m-2 h-1. …

The Coastal Monitor: Fall 2017/ Spring 2018, John T. Tanacredi Ph.D.

The Coastal Monitor

As I sat there in the Members Lounge at the Explorers Club; the world center for exploration, getting ready for our first Spring Saturday Science for Students @the EC lecture, I was putting together some notes on the accomplishments of our science students and CERCOM over the last few months since our last newsletter. Our visit to the Galapagos, a spectacular academic experience for our Molloy College students was at the top of my list! This was certainly not an epiphany but as I accumulated the items on this list, I was impressed not only with what we have conducted …

Age-0 Walleye Growth Rates Following Spiny Water Flea Bythotrephes Longimanus Invasion, Joseph Amundson

Journal of Earth and Life Science

Within Voyageurs National Park, spiny water flea Bythotrephes longimanus has reduced Lake Kabetogama and Rainy Lake native zooplankton biomass during summer peak by 40-60%. Subsequently, planktivorous age-0 Yellow Perch Perca flavescens growth has decreased. A possible trophic cascade may influence predatory fish growth rates like that of age-0 Walleye Sander vitreus. Using seine net and electrofishing data, age-0 Walleye growth rates were modeled as a linear function of growing degree days (GDD) and the slope was compared between pre- and post-spiny water flea establishment. Nearby Lake Vermilion, assumed to have been unaffected by spiny water flea until 2015 and …

Black-Tailed Prairie Dog (Cynomys Ludovicianus) State-And-Transition Model For Loamy Ecological Sites In Mlra 62 In Custer State Park, South Dakota, Mark R. Hendrix

Electronic Theses and Dissertations

Black-tailed prairie dogs (Cynomys ludovicianus) are native burrowing rodents that occupy large areas in the shortgrass and mixed-grass prairies of the Northern Great Plains. They are an important component of these prairie systems due to their impacts on plant communities. Currently State-and-Transition models (STMs) for grassland Ecological Site Descriptions (ESDs) address grazing by livestock as a major factor affecting states and phases within states. Impacts from other grazers, such as prairie dogs, are either not addressed directly, or are included only in a transition to a generalized early seral state. There are, however, dramatic differences in plant communities …

Incorporating Multi-Spectral Imaging Into Long-Term Upland Breeding Bird Monitoring, Kyle William Schumacher

Master's Theses or Doctor of Nursing Practice

Quivira National Wildlife Refuge in Kansas, United States partnered with Fort Hays State University Hays, KS in 2014 to begin a collaborative research project that aimed to develop a long-term monitoring protocol guided by the Comprehensive Conservation Plan for the refuge published in 2013. This plan identified specific wildlife taxa underrepresented in management impact assessments throughout the property. As a result of this plan, surveys were established to monitor interactions between upland breeding birds and the vegetation community. I conducted point count surveys in 2016, 2017, and 2018 for 122 observation points across four transects. I measured seventeen vegetation variables …

Evolution And Distribution Of Phenotypic Diversity In The Venom Of Mojave Rattlesnakes (Crotalus Scutulatus), Jason Strickland

Electronic Theses and Dissertations

Intraspecific phenotype diversity allows for local adaption and the ability for species to respond to changing environmental conditions, enhancing survivability. Phenotypic variation could be stochastic, genetically based, and/or the result of different environmental conditions. Mojave Rattlesnakes, Crotalus scutulatus, are known to have high intraspecific venom variation, but the geographic extent of the variation and factors influencing venom evolution are poorly understood. Three primary venom types have been described in this species based on the presence (Type A) or absence (Type B) of a neurotoxic phospholipase A2 called Mojave toxin and an inverse relationship with the presence of snake venom metalloproteinases …

Patterns Of Trematode Distribution From Hosts Collected At Lake Winnibigoshish, Minnesota, Scott Malotka

All Graduate Theses, Dissertations, and Other Capstone Projects

A comparative and seasonal study was performed on trematode populations and communities within waterfowl definitive hosts in order to determine important factors in the structuring of these communities. Furthermore, larval trematode populations were also sampled in order to compare larval stages found within snail hosts to adult stages found within collected waterfowl in order to determine where infections could have occurred with the trematode species. 52 birds including 18 blue-winged teal (Anas discors), 5 bufflehead (Bucephala albeola), 4 common goldeneye (Bucephala clangula), 1 greater scaup (Aythya marila), 1 green-winged teal (Anas carolinensis), 11 lesser scaup (Aythya affinis), 1 northern pintail …

The Role Of Environmental Filtering In Structuring Appalachian Tree Communities: Topographic Influences On Functional Diversity Are Mediated Through Soil Characteristics, Julia I. Chapman, Ryan W. Mcewan

Biology Faculty Publications

Identifying the drivers of community assembly has long been a central goal in ecology, and the development of functional diversity indices has provided a new way of detecting the influence of environmental gradients on biotic communities. For an old-growth Appalachian forest, we used path analysis to understand how patterns of tree functional diversity relate to topography and soil gradients and to determine whether topographic effects are mediated through soil chemistry. All of our path models supported the idea of environmental filtering: stressful areas (high elevation, low soil moisture, low soil nutrients) were occupied by communities of low functional diversity, which …

Hunter Harvest Effect On The Breeding Bird Population Of Northern Pintail Anas Acuta In North America, Matthew Wang

Journal of Earth and Life Science

Hunter harvest and the effects that it can have on population dynamics is a relationship used by wildlife professionals when making management decisions. Hunter harvest can be compensatory or additive on wildlife populations and instances where hunter harvest has been a key role in a population decline, and sometimes demise, is an occurrence studied in wildlife management. Waterfowl numbers in North America have increased 17% since 1960, but during that same time frame the Northern Pintail population has decreased 40%. Hunter harvest data has been recorded by the U.S. Fish and Wildlife Service since 1961, while they have simultaneously been …

The Ecology Of Land Managers In Riparian Restoration, Lisa Buie Clark

Electronic Theses and Dissertations

While previous studies in restoration ecology have focused on the efficacy of direct management actions, the driving forces on management decisions (e.g., managers' characteristics or attitudes, environmental conditions) and the indirect impacts on restoration outcomes from management decisions (such as whether to collaborate) are quantified here for the first time. As a case study, I used data from 244 sites across the riparian Southwest US where the invasive shrubby tree Tamarix sp. was removed using various different methods. I surveyed and interviewed the 45 land managers who were responsible for the removal projects to determine their characteristics, attitudes, and …