Biology Commons^™

Predictive Biomarkers Demonstrating The Effect Of Levels Of Copper And Zinc From Exposure To World Trade Center 9/11 Particulate Matter On Human Esophageal Cells In Vitro, Rossara Nunez

Theses, Dissertations and Culminating Projects

The World Trade Center Attack on September 11th, 2001 was the largest environmental attack that has ever happened in New York City. In the aftermath of the collapse of the twin towers, many first responders and rescue workers were exposed to the resulting clouds of dust. This toxic material has been shown to be responsible for membrane damage in human lung cells and can possibly become the cause of increased oxidative stress. The underlying factors that produce these findings are thought to the synergistic effects of the many components found within the market street sample. Complete analysis of the heavy …

Adaptive Responses Of Animals To Climate Change Are Most Likely Insufficient, Viktoriia Radchuk, Thomas Reed, Céline Teplitsky, Martijn Van De Pol, Anne Charmantier, Christopher Hassall, Peter Adamík, Frank Adriaensen, Markus P. Ahola, Karl S. Berg

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Biological responses to climate change have been widely documented across taxa and regions, but it remains unclear whether species are maintaining a good match between phenotype and environment, i.e. whether observed trait changes are adaptive. Here we reviewed 10,090 abstracts and extracted data from 71 studies reported in 58 relevant publications, to assess quantitatively whether phenotypic trait changes associated with climate change are adaptive in animals. A meta-analysis focussing on birds, the taxon best represented in our dataset, suggests that global warming has not systematically affected morphological traits, but has advanced phenological traits. We demonstrate that these advances are adaptive …

Coral Reef Change Detection In Remote Pacific Islands Using Support Vector Machine Classifiers, Justin J. Gapper, Hesham El-Askary, Erik Linstead, Thomas Piechota

Mathematics, Physics, and Computer Science Faculty Articles and Research

Despite the abundance of research on coral reef change detection, few studies have been conducted to assess the spatial generalization principles of a live coral cover classifier trained using remote sensing data from multiple locations. The aim of this study is to develop a machine learning classifier for coral dominated benthic cover-type class (CDBCTC) based on ground truth observations and Landsat images, evaluate the performance of this classifier when tested against new data, then deploy the classifier to perform CDBCTC change analysis of multiple locations. The proposed framework includes image calibration, support vector machine (SVM) training and tuning, statistical assessment …

Microplastics In The Digestive System Of The Atlantic Sharpnose Shark (Rhizoprionodon Terraenovae) In Winyah Bay, Sc, Elise Virginia Pullen

Electronic Theses and Dissertations

The digestive tracts and livers of adult male Atlantic sharpnose sharks (N=16), Rhizoprionodon terraenovae, from Winyah Bay, South Carolina were examined for ingested microplastics. R. terraenovae is a small, locally abundant, coastal mesopredatory elasmobranch belonging to the family Carcharhinidae. Microfibers comprised the largest categories of plastics (94% of the total), and were found in 100% of sharks examined. The number of micro- and other plastics ranged from 34 to 75 per individual and totaled 927. The majority of plastics (40%) were blue in coloration, and 55% were <1 mm in length. Microplastics were observed on both the interior and exterior of the organs examined, and three microfibers were embedded within the stomach lining, an observation not previously reported in marine vertebrates and one which represents a potential pathway for the translocation of ingested microplastics.

Predicting Habitat Choice After Rapid Environmental Change, Philip H. Crowley, Pete C. Trimmer, Orr Spiegel, Sean M. Ehlman, William S. Cuello, Andrew Sih

Biology Faculty Publications

Decisions made while searching for settlement sites (e.g., nesting, oviposition) often have major fitness implications. Despite numerous case studies, we lack theory to explain why some species are thriving while others are making poor habitat choices after environmental change. We develop a model to predict (1) which kinds of environmental change have larger, negative effects on fitness, (2) how evolutionary history affects susceptibility to environmental change, and (3) how much lost fitness can be recovered via readjustment after environmental change. We model the common scenario where animals search an otherwise inhospitable matrix, encountering habitats of varying quality and settling when …

Saturated Hydrocarbon Analysis Of Liberty State Park Soils, Matthew Chi-Hymn Cheung

Theses, Dissertations and Culminating Projects

Contaminated soils have been a concern in New Jersey since the Industrial Revolution (Gallagher, 2008). One site in particular has a variety of contaminants and is near the coast of Jersey City in Liberty State Park. Liberty State Park has been impacted by three significant changes. It was first a wetland in the 1600s, then became a New York dump site, and finally a railyard for the Central Railroad of New Jersey (Stanislaw, 2013). The whole land mass has mixed contaminants, including trace elements, heavy metals, organic wastes, and organic compounds. Currently, most of the state park has been dredged …

Biogeochemical Effects Of Sea Level Rise-Induced Transitions Within Coastal Wetlands, Havalend Steinmuller

Electronic Theses and Dissertations

As sea level rise (SLR) affects coastal wetlands, ecosystem responses can include vertical accretion, landward transgression, or submergence. Sea level rise-induced transitions can alter key biogeochemical transformations within wetland soils, impacting the ability of these systems to provide ecosystem services, specifically carbon (C) storage and water quality regulation. Through a series of complementary laboratory and field-based studies, biogeochemical responses to salinity, vegetation shifts, and submergence were investigated. Changes in nutrient dynamics associated with saltwater intrusion were evaluated by artificially adding saline water to different freshwater wetland soil types, indicating that potential exports of critical nutrients (forms of nitrogen, phosphorus, and …

Effects Of Ecological Restoration Techniques In Glen Canyon National Recreation Area, Simone Ka-Voka Jackson

UNLV Theses, Dissertations, Professional Papers, and Capstones

A better understanding of key ecological restoration techniques can inform land management in the Southwest on restoration options for areas infested by invasive grasses that can pose threats to ecosystems, from changes in nutrient cycling to altered fire regimes. In the semi-arid desert of Glen Canyon National Recreation Area (GLCA), several exotic grasses pose risks to local ecosystems: Saccharum ravennae, a relatively new invasive perennial grass, and Bromus rubens and Bromus tectorum, widespread annual grasses. In this study, multiple ecological restoration techniques were implemented to assess their effects on native and nonnative vegetation on sites invaded by the non-native grasses …

Assessing Minimal-Input Restoration Strategies For Desert Soil And Vegetation Restoration, Audrey Jean Rader

UNLV Theses, Dissertations, Professional Papers, and Capstones

The Mojave and Sonoran Deserts have been negatively impacted by anthropogenic disturbances. Considering that these ecosystems may recover on millennial timescales, research has shown that restoration techniques can be fairly successful in initiating long-term recovery processes in these sensitive environments. However, uncertainty remains as to which techniques are effective in different circumstances, such as in different climates or across different soil properties, and which techniques may best avoid unintended consequences, such as facilitating non-native plants. To reduce fugitive dust as a human health hazard, increase soil stability, and enhance wildlife habitat, further work is necessary to develop restoration techniques for …

Isolation And Characterization Of A Novel Terpenoid From The Needles Of Eastern White Pine (Pinus Strobus), And Its Potential Relation To Climate Change, Samantha Hack

Honors Theses

Climate changes is one of the most serious threats facing the future of our planet, and with is we will see drastic changes to water levels global temperatures, and atmospheric conditions. Modeling future atmospheric conditions is crucial if we are to plan for and mitigate the consequences of climate change – while important, these models will not be useful to future scientists unless various parameters, such as BVOC emission to the atmosphere, are accounted for and included in computer models. Eastern white pine (Pinus strobus) are predicted to be a major component of future climax forests as their abundance increases …

The Effects Of Climate Change And Forest Disturbances On Terpene Production Of White Pine (Pinus Strobus) And Red Pine (Pinus Resinosa) In Northern Michigan, Troy Dehagen

Honors Theses

The secondary impacts that climate change may have on the interactions between forests and the atmosphere through forest disturbances is of increasing interest as the climate continues to change. Anthropogenic climate change, which is a direct result of coal and fossil fuel emissions, is likely to impact forest ecology through increased temperatures and extreme precipitation events, thus increasing the frequency and severity of climate-induced forest disturbances. Forest disturbances may have a secondary impact on the production and emission of biogenic volatile organic compounds (BVOC) within forests. In the presence of oxides of nitrogen (NO_x) produced from fossil fuel …

Reduced-Impact Logging For Climate Change Mitigation (Ril-C) Can Halve Selective Logging Emissions From Tropical Forests, Anand Roopsind

Biology Faculty Publications and Presentations

Selective logging causes at least half of the emissions from tropical forest degradation. Reduced-impact logging for climate (RIL-C) is proposed as a way to maintain timber production while minimizing forest damage. Here we synthesize data from 61 coordinated field-based surveys of logging impacts in seven countries across the tropics. We estimate that tropical selective logging emitted 834 Tg CO₂ in 2015, 6% of total tropical greenhouse gas emissions. Felling, hauling, and skidding caused 59%, 31%, and 10% of these emissions, respectively. We suggest that RIL-C incentive programs consider a feasible target carbon impact factor of 2.3 Mg emitted per …

Effect Of Environmental Conditions On Biomass Of Symplocarpus Foetidus, Christy Lemay

Student Scholar Showcase

Symplocarpus foetidus (skunk cabbage) is an obligate wetland plant that occurs sporadically in wetlands throughout Virginia. Its life cycle is well studied with flowers budding in late January to early February through a process known as thermogenesis that heats the soil surrounding the plant. Pollination of fruits by flies and distribution of fruits/seeds through wildlife. Leaves appear in March with full growth above ground by early May. The leaves die back by July. Reproduction and distribution is sensitive to disturbance and environmental factors such as soil moisture, hydrology, and seed distribution. We collected environmental data in eight designated wetland plots …

Delineation Of Ohio River Flood Zones In Ballard County Using Remote Sensing, Nathan Rister

Scholars Week

The purpose of this study was to use remote sensing to map flood zones in Ballard County as it correlates to the Ohio River flood gauges. This will help Wildlife managers to know which areas are most likely to be flooded by simply looking at river gauges and prevent them to having to check which areas are flooded in person. By using this technique wildlife managers will be able to save time and resources as well as better manage wildlife areas along the Ohio River.

Characterization Of Psychromonas Aquimarina, A New Model Organism For Climate Change, Carrie Carpenter

Experiential Learning Projects

The current increase of average global temperature puts 25 to 35 percent of plant and animal species at an increased risk of extinction (Climate Change, 2018). Changing any environmental factor, such as increasing growth temperature, can significantly impact any organisms’ ability to survive. Because of the diversity of organisms on the planet, it is not feasible to study how each individually might adapt, but rather it is more efficient to study select organisms. This research focuses on a psychrophilic bacterium, Psychromonas aquimarina, which can survive in colder regions where most bacteria would not. This bacterium was chosen because climate change …

Effects Of Increased Precipitation On The Life History Of Spring- And Autumn-Germinated Plants Of The Cold Desert Annual Erodium Oxyrhynchum (Geraniaceae), Yanfeng Chen, Xiang Shi, Lingwei Zhang, Jerry M. Baskin, Carol C. Baskin, Huiliang Liu, Daoyuan Zhang

Biology Faculty Publications

Future increased precipitation in cold desert ecosystems may impact annual/ephemeral plant species that germinate in both spring and autumn. Our primary aim was to compare the life history characteristics of plants from spring-germinating (SG) and autumn-germinating (AG) seeds of Erodium oxyrhynchum. Plants in field plots with simulated increases in precipitation of 0, 30 and 50 % in spring and summer were monitored to determine seedling survival, phenology, plant size, seed production and biomass accumulation and allocation. Germination characteristics were determined in the laboratory for seeds produced by plants in all increased precipitation treatments. Increased precipitation in spring significantly improved survival …

Changes In Spring Arrival Times: Climate Change And The Phenology Of Spring Bird Migration, Aaron Svedlow

Student Scholarship

Climate change and weather affect the phenology of bird migration; however, specific climatological factors associated with these observed effects have only recently been described. The relationship between local, regional, and global climate patterns and avian migration are increasingly important to understand due to the widespread, and potentially negative, implications (such as reduced fecundity) of rapid human induced climate change on bird populations. Migratory birds are under selective pressure to arrive at breeding areas at the optimal time to set up nesting territories and exploit seasonally abundant food resources, and because climate change has the potential to occur more rapidly than …

Snowshoe Hares (Lepus Americanus) Alter Feeding Behavior In Response To Coyote (Canis Latrans) And Moose (Alces Alces) Cues At Diverse Vegetation Densities, Zachary K. Lankist

Student Scholarship

Prey interpret predator cues as a warning and use them to assess the danger of a given area. Multiple prey species avoid chemical cues from predators at feeding sites because the risk of death outweighs the benefit of food. However, we lack information regarding avoidance of chemical cues from competitors as well as how foraging behavior changes alongside vegetative cover. To test if chemical cues and veget~tive cover alter prey vigilance, number of visits, and time spent at feeding sites, I observed snowshoe hares (Lepus americanus) in plots containing coyote (Canis latrans; predator) and moose (Alces alces; competitor) urine across …

Cryptic Herbivorous Invertebrates Restructure The Composition Of Degraded Coral Reef Communities In The Florida Keys, Florida, Usa, Angelo Jason Spadaro

Biological Sciences Theses & Dissertations

Coral reefs have been on a trajectory of decline for nearly a century due to a variety of factors that have contributed to the shift in these communities away from dominance by reef-building corals, with commensurate changes on community composition and function. Florida’s reefs are a compelling example of a degraded system that has undergone a phase shift, and thus offered an excellent model system for my study of the effects of grazing by cryptic herbivores on community composition and their potential restoration value. I had four major objectives: (1) determine the suitability of Maguimithrax spinosissimus for manipulating grazing intensity …

Spatial And Temporal Variability In Post-Larval Yellow Perch Density, Steve Hauschildt

Biology Graduate Theses

Yellow Perch Perca flavescens are important as forage for other species and for sport fishing in many northern lakes. However, estimating post-larval Yellow Perch populations can be difficult because of many environmental factors that cause unexplained variation. The objective of this study was to help reduce unexplained variation by determining a post-larval Yellow Perch population density estimate on Blackduck Lake, MN, provide guidance to help determine the number of trawls required for trawling-based recruitment indices to achieve varying levels of precision, and test for the effects of wind speed and direction on post-larval Yellow Perch spatial variability. This study estimated …

Seed Germination Responses To Seasonal Temperature And Drought Stress Are Species‐Specific But Not Related To Seed Size In A Desert Steppe: Implications For Effect Of Climate Change On Community Structure, Fengyan Yi, Zhaoren Wang, Carol C. Baskin, Jerry M. Baskin, Ruhan Ye, Hailian Sun, Yuanyuan Zhang, Xuehua Ye, Guofang Liu, Xuejun Yang, Zhenying Huang

Biology Faculty Publications

Investigating how seed germination of multiple species in an ecosystem responds to environmental conditions is crucial for understanding the mechanisms for community structure and biodiversity maintenance. However, knowledge of seed germination response of species to environmental conditions is still scarce at the community level. We hypothesized that responses of seed germination to environmental conditions differ among species at the community level, and that germination response is not correlated with seed size. To test this hypothesis, we determined the response of seed germination of 20 common species in the Siziwang Desert Steppe, China, to seasonal temperature regimes (representing April, May, June, …

Ua66/6/2 Ogden College Of Science & Engineering Biology Publications, Wku Archives

WKU Archives Collection Inventories

Publications created by and about Biology.

Ua66/6/1 Ogden College Of Science & Engineering Biology Administration, Wku Archives

WKU Archives Collection Inventories

Records created by and about the administration of the Biology Department.

Urban Aerobiological Risk Mapping Of Ornamental Trees Using A New Index Based On Lidar And Kriging: A Case Study Of Plane Trees, Raúl Pecero-Casimiro, Santiago Fernández-Rodríguez, Rafael Tormo-Molina, Alejandro Monroy-Colín, Inmaculada Silva-Palacios, Juan Pedro Cortés-Pérez, Ángela Gonzalo-Garijo, J. M. Maya-Manzano

Articles

Ornamental trees bring benefits for human health, including reducing urban pollution. However, some species, such as plane trees (Platanus sp.), produce allergenic pollen. Consequently, urban maps are a valuable tool for allergic patients and allergists, but they often fail to include variables that contribute to the “building downwash effect”, such as the width and shape of streets and the height of buildings. Other factors that directly influence pollen dispersion (slopes and other geographical features) also have not traditionally been discussed. The LiDAR (Laser Imaging Detection and Ranging) technique enables one to consider these variables with high accuracy. This work proposes …

Frequent Prescribed Fires Can Reduce Risk Of Tick-Borne Diseases, Elizabeth R. Gleim

Environmental Studies / Environmental Science Faculty Scholarship

Recently, a two-year study found that long-term prescribed fire significantly reduced tick abundance at sites with varying burn regimes (burned surrounded by burned areas [BB], burned surrounded by unburned areas [BUB], and unburned surrounded by burned areas [UBB]). In the current study, these ticks were tested for pathogens to more directly investigate the impacts of long-term prescribed burning on human disease risk. A total of 5,103 ticks (4,607 Amblyomma americanum, 76 Amblyomma maculatum, 383 Ixodes scapularis, two Ixodes brunneus, and 35 Dermacentor variabilis) were tested for Borrelia spp., Rickettsia spp., Ehrlichia spp., and Anaplasma phagocytophilum. Long-term prescribed fire did not …

Ultrafine Black Carbon: A Cumulative Assessment On The Physiology Of Lung - Derived Cells, M Esther Salinas

Open Access Theses & Dissertations

Combustion-derived nanomaterials are noxious ultrafine (<100 nm) aerosolized by-products generated by human activity. They pose threats to pulmonary health due to their small size, allowing them to penetrate deep into the alveolar regions causing detrimental responses downstream. Indeed, an examination between nanocarbon particle exposure and poor pulmonary health via cellular behavior was needed. I hypothesized that low-dose and long-term administrations of carbonaceous nanoparticles contribute to respiratory conditions by irritating lung-derived cells. Responses to ultrafine black carbon (UBC), a key component of airborne pollutants, by human lung A549 and murine lung LA4 epithelial cells, human peripheral-blood monocytes THP1, and murine macrophages RAW264.7 were investigated. These lines were chosen because epithelial cells and mononuclear cells (monocytes and macrophages) are the first to come in contact with inhaled particulate matter (PM) and contribute to stress and inflammation of pulmonary tissues. The cells were first plated on day zero and fed fresh UBC suspended in culture media on days one, four, and seven. The exposure regimen included three different low-level concentrations of UBC. On day ten, all cells were prepared for subsequent assays. Effects on cellular viability revealed that UBC was modestly cytotoxic while ATPase and esterase activity (termed enzyme vitality for the purpose of this study) were significantly diminished in a dose-dependent manner. Additionally, beta-galactosidase proportionally increased with UBC concentration compared to untreated cells, indicating that cellular senescence was promoted across all cell types. Multiple markers of oxidative stress were subsequently measured, showing non-uniform trends and displaying moderate accumulation of oxidative damage, contingent upon cell line and UBC treatment. However, a significant induction of inner mitochondrial membrane depolarization of human UBC-treated cells was observed; an aberrant cell-cycle progression was found across all cells. The implemented regimen of UBC exposure elicited an imbalance of free (reduced) glutathione, altered mitochondrial potential, and abnormal cell-cycle activity. This method demonstrated that modifications across both species induced changes to cellular fitness overall. The data supported that compounding nanosized black carbon exposure could negatively affect overall pulmonary cell health by distinctively modifying intracellular activity. Additionally, we further surmised that sustained exposure to nanocarbon could impair innate immunity. Therefore, reactive oxygen species (ROS), reactive nitrogen species (RNS), and cytokine levels upon continuous administrations to 3.0 μg/mL UBC after brief challenges to microbial proxies were assessed; on day 9, the cells were succumbed to three different microbial insults (LPS, Poly I:C, and Zymosan). On day 10, measurements demonstrated a moderate accumulation of oxidative stress, conditional to each cell type. Thus, UBC plus microbe approach triggered pro-oxidant levels and cytokine production across different cell types and diminished phagocytic response by murine macrophages. Based on the results, ultrafine-PM exposure may impair inflammatory function in response to pathogenic infections. In summation, our findings indicated that additive nanosized UBC in combination with microbe-like challenges may compromise cellular behavior, suggesting potential ways by which inhalation of ultrafine-PM may contribute to or exacerbate poor pulmonary health.

Volume 11, Jacob Carney, Ryan White, Joseph Hyman, Jenny Raven, Megan Garrett, Ibrahim Kante, Summer Meinhard, Lauren Johnson, William "Editha" Dean Howells, Laura Gottschalk, Christopher Siefke, Pink Powell, Natasha Woodmancy, Katharine Colley, Abbey Mays, Charlotte Potts

Incite: The Journal of Undergraduate Scholarship

Table of Contents:

Introduction, Dr. Roger A. Byrne, Dean

From the Editor, Dr. Larissa "Kat" Tracy

From the Designers, Rachel English, Rachel Hanson

Synthesis of 3,5-substituted Parabens and their Antimicrobial Properties, Jacob Coarney, Ryan White

Chernobyl: Putting "Perestroika" and "Glasnot" to the Test, Joseph Hyman

Art by Jenny Raven

Watering Down Accessibility: The Issue with Public Access to Alaska's Federal Waterways, Meagan Garrett

Why Has the Democratic Republic of the Congo outsourced its Responsibility to Educate its Citizens? Ibrahim Kante

Art by Summer Meinhard

A Computational Study of Single Molecule Diodes, Lauren Johnson

Satire of …

Assessing Freshwater Mussel (Bivalvia: Unionidae) Assemblages And Effects Of Eutrophication On Pyganodon Grandis In Lakes Of Eastern South Dakota, Katherine M. Wollman

Electronic Theses and Dissertations

Globally, the family Unionidae is the most threatened group of freshwater fauna. South Dakota is well known for its agricultural production, leading to cultural eutrophication from enhanced fertilizers and sediments. This impact can alter species presence, age, growth and mortality. Objectives of this study were to 1) implement the first comprehensive lake survey of freshwater mussels in eastern South Dakota lakes and document distribution, occurrence and relative abundance, 2) evaluate relationships between age, growth and mortality of Pyganodon grandis and lake trophic state. Freshwater mussels were sampled in 2017 from 116 proportionally and randomly selected natural lakes and reservoir basins …

Butterflies As Charismatic Indicators : Can Study Of Impact Of On-Farm Habitat Enrichment On Butterfly Populations Provide Insight About Habitat Quality For Other Insects?, Erin Allen

Legacy Theses & Dissertations (2009 - 2024)

Populations of insect pollinators have been declining precipitously across the Northern Hemisphere, due to disease, insecticide application, and habitat degradation and loss. As a result, crop pollination services are at risk, and the ecological insurance provided by biodiversity is in jeopardy. Regional efforts to combat the decline of pollinator diversity and abundance include the New York State Pollinator Protection Plan to assess regional pollinator health, strategies to enhance wild pollinator habitat, as well as on-farm habitat enhancement strategies to augment pollinator populations in and around crops. One such habitat enhancement strategy involves improving native floral resource availability, which is often …

Application And Refinement Of Molecular Ecology Techniques For Amphibian Conservation, Stephanie Marie Burgess

Electronic Theses and Dissertations

Wildlife conservation has become increasingly difficult due to habitat loss habitat fragmentation and land use change. Thus conservationists have embraced advances in molecular ecology such as landscape genetics and microbial bioinformatics that employ genetic techniques to further understand the relationship between individuals and their environment. In landscape genetics model inferences can be used to identify features that facilitate or resist gene flow providing a framework for anticipating the impacts of land use changes on a species’ ability to disperse. However the factors that affect the transferability of landscape genetics inferences are poorly understood and little is known about the effect …