Biology Commons^™

Impacts Of Climate Change On Small Pelagic Fish Catches In The Coastal Artisanal Fishers Communities Of Tanzania, Lyidia Kapapa, Paul Onyango Onyango, Nibedita Mukherjee, Prosper Mfilinge

Tanzania Journal of Science

Climate-related effects occur across all regions in Tanzania, affecting primary sectors such as agriculture and fishing. This study investigated the impacts of climatic change on small pelagic catches in fishers in Kilindoni, Kipumbwi and Kilwa Kivinje villages along the Tanzanian coast. We studied how changes in rainfall, sea surface temperature, wind speed and chlorophyll a affect small pelagic fisheries using primary and secondary data. Qualitative and quantitative methods were applied. Primary data collection involved questionnaires, focus group discussions and key informant interviews. Secondary data was obtained from Tanzania Meteorological Agency and remote sensing from Modi's sensor. Results showed an increase …

Quantifying The Effect Of Disturbance On Native Mojave Desert Shrubs, Tamara J. Wynne

UNLV Theses, Dissertations, Professional Papers, and Capstones

Disturbance can come in many different forms. In our studies, we looked at the impact of a solar photovoltaic facility on native plants growing inside and outside of the facility, alteration in precipitation (simulated) on four native shrubs and the impact of applying supplemental water as a function of volume and frequency to establish native shrubs such as might occur at restoration sites. Disturbance is becoming a more common phenomenon in many ecosystems throughout the world, increasing the need for studies that quantify the impact at the plant and ecosystem level. Each research project revealed different plant responses, such as …

A Trichy Situation, Kathryn Purple

Cumberland Mountain Naturalist

This issue of the Cumberland Mountain Naturalist discusses Dr Kathryn Purple's research concerning Trichomonosis carried by pigeons.

The Coastal Monitor: Vol. 9 No. 5, John Tanacredi Ph.D.

The Coastal Monitor

There are a multitude of lessons learned from the last 3 years of the Covid-19 pandemic. But one truly stands out ...the total lack of understanding of the basic chemistry associated with the nitrogen cycle, which in Suffolk County, NY, continues to be declared as the “evil-nitrogen”. The major source of nitrogen into the water body comes from the atmosphere which is the predominate constituent of the air we breathe79% nitrogen. Nitrogen compounds contribution to eutrophication in freshwater (ponds & lakes) systems is legendary and, the concentration of nitrogen in marine waters has always been known as a limiting agent …

Recovery Of Soil Microbial Diversity And Functions Along A Tropical Montane Forest Disturbance Gradient, Renee Sniegocki, Jessica B. Moon, Abigail L. Rutrough, Jude Gireneus, Jaya Seelan Sathiya Seelan, Michael C. Farmer, David C. Weindorf, Kusum Naithani

Biological Sciences Faculty Publications and Presentations

Logging and forest conversion are occurring at alarming rates in tropical forests. These disturbances alter soil microbial community structure and functions. While direct links between changes in soil properties, such as pH and microbial community structure are well established, the indirect effects of logging and forest conversion on soil microbial community structure and functions are poorly understood. We used a space-for-time substitution to investigate the changes in soil microbial diversity and functions across a forest recovery gradient in the tropical montane forests of northern Borneo. We used surface (top 5 cm) soil to assess soil physicochemical and microbial (next-generation DNA …

Chromosome Number Evolution, Phylogeography, And The Effects Of Climate Change On Species Distributions In Polyploid Plant Systems, Courtney H. Babin

LSU New Orleans Theses and Dissertations

Polyploidy, a term used to describe organisms with cells having more than two paired sets of chromosomes, is a significant driver of diversification among land plants. Over a century of research has advanced our understanding of polyploidization in some taxa, but polyploid organisms remain understudied. In this dissertation, I investigate chromosome number evolution, phylogeographic structure, genetic differentiation, and the effects of climate change on ploidy level distribution using polyploid plant systems. In the first chapter, I inferred a molecular phylogeny of Allium, an economically important genus that includes cultivated crops and ornamentals, to investigate evolutionary transitions in chromosome number …

Chihuahuan Desert Rock Pool Community Assemblages: Patterns Of Taxonomic Diversity, Joseph Lee Mcdaniel

Open Access Theses & Dissertations

As climate change continues to become more prevalent, increasing temperatures and altering precipitation patterns will disrupt the environmental balance of ecosystems and spark the imminent threat of a 6th mass extinction event. Many researchers believe this has already begun, as losses for numerous taxonomic clades have been well documented; however, the loss of invertebrates is still unknown and may be much more severe than those of other animal clades. A significant factor contributing to the shortfall of invertebrate biodiversity loss is rooted in the lack of understanding of the diversity and distribution of these animals. There is still much to …

Exploring New Methods For Quantifying Soil Reduction, Redox Potential, And Iron Reducing Bacteria Using The Iris Method In Wetland Soils., Jessica Everett

Biology Theses

The presence of hydric soils is one of the key factors used to identify and delineate wetlands as specified by the United States Fish and Wildlife Service (USFWS). The Indicator of Reduction in Soil (IRIS) Method, accepted by the National Technical Committee for Hydric Soils (NTCHS) can indicate iron reduction in soil which can identify hydric soil for wetland delineation efforts. This thesis was conducted to see if the IRIS method had potential for other uses such as quantifying relative measurements of iron reducing bacteria and to see if a colorimetric scale could be curated to bring less subjection to …

Orthotrichum Lyellii As An Active Moss Biomonitor: Examining The Interplay Between Ambient Pm10, Bulk Deposition And Heavy Metals In An Urban Environment, Scott Bradley Kiel

Dissertations and Theses

The importance of monitoring and preventing pollution in the environment is a globally recognized issue. Of the criteria pollutants outlined by the United States Environmental Protection Agency, particulate matter is among these least understood in relation to toxicity and most wide-spread. Many governments have employed continuous air quality monitoring networks to track ambient levels of particulate matter, but are often too widespread to capture the heterogeneity of the urban environment, especially for heavy metal deposition. In Portland, OR, the epiphytic moss Orthotrichum lyellii was successfully used as a low-cost passive biomonitor to increase the spatial resolution of pollution around the …

Relating Plant Community Structure To Carbon Dynamics In Semiarid Grasslands, Theodore D. Roper

Biology ETDs

Understanding how fine-scale changes in soil characteristics and plant community composition affect ecosystem functioning is key to predicting how biome shifts will affect regional and global carbon cycling. This is crucial in the dryland biomes of the US Southwest, projected to be one of the regions most affected by climate change. We examined fine-scale drivers of ecosystem function within two biomes – a Chihuahuan Desert grassland and Plains/Chihuahuan Desert ecotone – via long-term vegetation data, micrometeorological data, eddy covariance carbon flux measurements, and soil water and texture, finding that the ecotone site had over 30% higher soil water content, over …

Antibiotic-Resistant Escherichia Coli And EnterococcusSpp. In Sand And Water At Tampa Bay Beaches, Jennifer K. Sabater

USF Tampa Graduate Theses and Dissertations

As antibiotic resistance in the environment continues to rise there is an increased concern that infections may become harder to treat as bacteria acquire genes for multidrug resistance. Recreational beach waters in the Tampa Bay area are routinely monitored by the Florida Department of Environmental Protection for the presence of fecal indicator bacteria (FIB) such as Escherichia coli and enterococci. Exceedances of beach action values (BAV) 235 CFU/100 mL (E. coli) and 70 CFU/100 mL (enterococci) indicate the presence of fecal contamination which is associated with an increased risk of disease for beachgoers. Antibiotic-resistant E. coli and Enterococcus spp. have …

Type Of Synthetic Microfiber Influences Ingestion By Freshwater Worms, Sarah A. Martinez

Honors College Theses

Plastics enter the environment from many sources, including clothing made from synthetic textiles, which shed a form of microplastics (microfibers) during their production, use and disposal. The impacts of microfibers on freshwater organisms are relatively unknown, therefore we tested the hypothesis that short- and long-term effects of microfibers on the aquatic worm, Lumbriculus variegatus, depend on the type of synthetic microfiber present. Microcosms containing L. variegatus, sediment and water were exposed to either no fibers (control) or one of three microfiber treatments (nylon, polyester or olefin) at the same concentration for 48 hours or 28 days. At the …

Nanotechnology-Based Approaches To Mitigate Environmental Pollutants -- Induced Neurological Disorders, Jyoti Ahlawat

Open Access Theses & Dissertations

Neurodegenerative diseases such as Parkinson's disease (PD), Alzheimerâ??s Disease (AD) and Huntingtonâ??s Disease (HD) have no cure despite intensive research efforts geared towards therapeutics development. In the USA, patients with PD and AD alone cost the nation ~ $200 billion annually in patient care and lost productivity. Therefore, there remains an urgent and unmet need to develop novel drugs and drug carriers with the potential to slow down, halt and ideally reverse the course of neurodegenerative disorders. The dissertation focuses on developing approaches towards targeting PD using multifactorial mechanisms including the targeting of protein aggregation and oxidative stress. This is …

Analysis Of Indianapolis Waterways For Evidence Of Eutrophication And Contamination Induced By Urban Pollution, Kiley Grace Wardwell

Undergraduate Honors Thesis Collection

The focus of my research will be largely focused on the water quality of the White River throughout Indianapolis. I will be testing water samples from five different points along the White River to analyze three of its contents, assessing the differing levels of pollution along different points progressing down the river and through the city. The locations I have chosen to test coincide with water gauge sites along the White River and are as follows: Logan Street in Noblesville, 82nd Street, Broad Ripple Dam, Michigan Road and Raymond Street. The surface water at these five locations will be tested …

Removal Of Arsenic (Iii) And Arsenic (V) From Aqueous Solution Via Common Sunflower Helianthus Annuus By Phytoremediation, Irving A. Vazquez Hurtado

Theses and Dissertations

Phytoremediation provides a cost-effective, non-invasive technique to remove contaminants from the soil and groundwater. Sunflowers are fast growing and have a showed effective at removing various pollutants from soil, including lead and other heavy metals. Health issues related to arsenic are mainly attributed to exposure of arsenite, whereas arsenate is much less toxic. The common sunflower Helianthus annuus was the species used to remove both arsenic (III) and As(V) ions from hydroponics solutions. In the present study sunflower seeds were germinated for a week, placed under the sun for a day and subsequently placed in a nutrient solution to aid …

Towards Conserving Crop Wild Relatives Along The Texas–Mexico Border: The Case Of Manihot Walkerae, Gisel Garza, Crystian Sadel Venegas Barrera, Jon Dale, José Guadalupe Martínez-Ávalos, Teresa Patricia Feria-Arroyo

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Walker’s Manihot, Manihot walkerae, is an endangered species endemic to south Texas and northeastern Mexico and is a Crop Wild Relative (CWR) of the international and economically important crop cassava (M. esculenta). Manihot walkerae is globally endangered (IUCN’s Redlist, Texas list, USA); however, it is not recognized on the Mexican list of endangered species (NOM-059-SEMARNAT). We assessed the status of M. walkerae in Mexico and re-evaluated its global status. According to our analysis, M. walkerae should be considered an endangered species based on the IUCN’s assessment method and a threatened species in Mexico based on the Mexican criteria. Our findings …

Volume 13, Payton Davenport, Audrey Lemons, Jacob Shope, Haley Smith, Cassandra Poole, Rachel Cannon, Rachel Boch, Suzanne Stetson

Incite: The Journal of Undergraduate Scholarship

Introduction Dr. Roger A. Byrne, Dean

From the Editor Dr. Larissa “Kat” Tracy

From the Designers Rachel English, Rachel Hanson

The Effect of Compliment Type on the Estimated Value of the Compliment by Payton Davenport, Audrey Lemons, and Jacob Shope

The Imperial Japanese Military: A New Identity in the Twentieth Century, 1853–1922 by Haley Smith

Longwood University’s campus: Human-cultivated Soil has Higher Microbial Diversity than Soil Collected from Wild Sites by Cassandra Poole

Reminiscent Modernism: Poetry Magazine’s Modernist Nostalgia for the Past by Rachel Cannon

Challenges Faced by Healthcare Workers During the COVID-19 Pandemic: A Preliminary Study of Age and …

In The Face Of Climate Change, Does Human Trampling Affect Dune Resilience And Alter Ecosystem Services?, Alexandra O. Findlay

Honors College Theses

Sand dunes play a valuable role on the coastline supporting unique native species and protecting beach communities. The City of Tybee Island, Georgia, USA has undergone extensive dune restoration to expand and rehabilitate its shoreline to better defend the town against the increasing frequency of hurricanes and storm surge. The project included the recovery of existing dune structures and construction of new dunes filled with sand pumped from offshore and vegetated with a variety of native species. To analyze the impact of human trampling on dune vegetation occurring adjacent to footpaths and crossovers in new and established dunes, we measured …

Aquatic Macroinvertebrates As Sentinels Of Changes In Local Stream Conditions In East Texas, Courtney Plummer, Erin Shepta

Undergraduate Research Conference

Study objective: To use aquatic macroinvertebrates to assess the habitat quality and biological conditions of a stream, La Nana Creek, impacted by different land use.

Urbanization Increases Isolation Of A Threatened Fish Species In East Texas Streams: A 20-Year Perspective, Zachary Hutchens

Undergraduate Research Conference

We conducted monthly surveys of fish and in-stream habitat conditions from August 2020 to August 2021 in reaches along Banita Creek and La Nana Creek to investigate ecology and population status of the Sabine shiner (Notropis sabinae) within these streams. On average, Banita Creek had shallow water with low flow, more diverse instream habitats, and lower values of salinity, conductivity, and turbidity compared La Nana Creek. The movements of Sabine shiners were tracked monthly using Visual Implant Elastomer tags. Over a year-long survey, we collected 267 Sabine shiners from Banita Creek and 10 individuals from La Nana Creek. Out of …

Species Diversity And Barcoding Of Macroinvertebrates From The San Antonio River, Gabrielle Silva

Student Research Symposium 2022 (Archived)

Macroinvertebrates are important biological indicators of health and ecological change within aquatic ecosystems. Macroinvertebrate diversity of the San Antonio (SA) River Watershed (Texas), which traverses rural and urban regions (Bexar County, TX), remains understudied compared to vertebrate counterparts of economic and conservation importance. The SA River hosts a diversity of crustaceans (crayfish), insects (beetles, dragonflies), annelids (leeches), and unidentified larvae at intermediate developmental stages. To improve ecological records of the SA River, an integrative approach is used to establish a reference macroinvertebrate species inventory and a genetic barcoding database (mitochondrial COI and/or 16S rRNA) for the SA River Mission Reach …

A Comparison Of Natural, Living, And Hardened Shorelines Ability To Prevent Coastal Erosion And Maintain A Healthy Ecosystem, Gabrielle Spellmann

Master's Theses

It is important to find a suitable method to protect the U.S. Gulf Coast shoreline, since its’ low elevation and the Loop current make it vulnerable to sea level rise. I focused on two manmade methods, hardened, and living shorelines, of coastal protection for when the natural marsh suffers excess erosion rates. Living shorelines are a suite of shoreline conservation and restoration techniques that usually involve some sort of hardened structure that dampens wave energy so that the native vegetation behind it can take root and stabilize the shoreline. This study looked at six different sites, all containing a natural, …

Cetacean Strandings In The Us Pacific Northwest 2000–2019 Reveal Potential Linkages To Oceanographic Variability, Amanda J. Warlick, Jessica L. Huggins, Dyanna M. Lambourn, Deborah A. Duffield, Dalin Nichole D'Alessandro, James M. Rice, John Calambokidis, M. Bradley Hanson, Joseph K. Gaydos, Multiple Additional Authors

Biology Faculty Publications and Presentations

Studying patterns in marine mammal stranding cases can provide insight into changes in population health, abundance, and distribution. Cetaceans along the United States West coast strand for a wide variety of reasons, including disease, injury, and poor nutritional status, all of which may be caused by both natural and anthropogenic factors. Examining the potential drivers of these stranding cases can reveal how populations respond to changes in their habitat, notably oceanographic variability and anthropogenic activities. In this study, we aim to synthesize recent patterns in 1,819 cetacean strandings across 26 species in the Pacific Northwest from 2000 to 2019 to …

The Coastal Monitor: Vol. 8 No. 4, John Tanacredi Ph.D.

The Coastal Monitor

The original five acre of land portion of the historic Blue Points Oyster Company is located at the southern end of Atlantic Ave in West Sayville, Islip Town, Suffolk County, New York on the shore of Great South Bay. The Center for Environmental Research and Coastal Oceans Monitoring (CERCOM) is the science field station serving Molloy College’s BCES programs in Earth & Environmental Sciences and Biology. Our mission is to provide unique hands-on educational opportunities in the physical and life sciences, in collaboration with a host of Federal, State, and local and NGO groups, to bolster students’ career path. Great …

Summer Distribution And Day Roost Characteristics Of Eastern Small-Footed Bats (Myotis Leibii) In West-Central Arkansas, Valerie Marie Kearny

Student Theses and Dissertations

Information on summer distribution and diurnal roosting is lacking for the imperiled, rock-roosting Myotis leibii, a species threatened by habitat loss and White-nose Syndrome. I aimed to 1) identify diurnal, summer roost locations in the greater Ouachita Mountains of Arkansas, and 2) determine roost habitat characteristics at the local, landscape, and roost-level scales. Using acoustic monitoring, rock searches, mist-netting, and temperature monitoring in 2019 and 2020, I found M. leibii in an aggregated distribution across the landscape roosting either solitarily or in small groups in the Rich Mountain-Black Fork Mountain, Mount Magazine, and Mount Nebo areas under sparse canopy cover, …

Migration Ecology Of Female Indiana Bats, Arin Michelle Vann

Student Theses and Dissertations

The Indiana bat (Myotis sodalis) has been listed as a federally endangered species since 1967 due to numerous natural and anthropogenic threats. Research on the species has focused on hibernacula and maternity colonies, but data gaps exist in portions of their range. To prevent further decline, migration resources need protection, but management practices are difficult to implement without having precise data on migration routes. I documented spring migration in Arkansas using aerial and ground telemetry during 2017–2018. Radio transmitters were affixed to 52 female M. sodalis during 2017 and 2018 of which 23 were successfully tracked. I located roost trees …

Spring Migration Behavior And Summer Habitat Associations Of Female Indiana Bats (Myotis Sodalis) In Arkansas, Heather N. Custer

Student Theses and Dissertations

Since 1967, the Indiana bat (Myotis sodalis) has been federally listed. Range-wide research continues to expand our understanding of the behaviors of the species, but knowledge gaps still remain. Specifically, information regarding spring migration behavior and associated summer habitat of female Indiana bats that overwinter in Arkansas is lacking. Accordingly, objectives of this research included determining direction and distance of migrating female Indiana bats, locating maternity colonies and roosts, estimating maternity colony size, home ranges, and core areas. Migration directions and distances varied among bats, and a maternity colony was located in Arkansas in 2019 that subsequently used artificial roosts …

Using Low-Fix Rate Gps Telemetry To Expand Estimates Of Ungulate Reproductive Success, Nathan D. Hooven, Kathleen E. Williams, John T. Hast, Joseph R. Mcdermott, R. Daniel Crank, Gabe Jenkins, Matthew T. Springer, John J. Cox

Forestry and Natural Resources Faculty Publications

Background

Population parameters such as reproductive success are critical for sustainably managing ungulate populations, however obtaining these data is often difficult, expensive, and invasive. Movement-based methods that leverage Global Positioning System (GPS) relocation data to identify parturition offer an alternative to more invasive techniques such as vaginal implant transmitters, but thus far have only been applied to relocation data with a relatively fine (one fix every  < 8 h) temporal resolution. We employed a machine learning method to classify parturition/calf survival in cow elk in southeastern Kentucky, USA, using 13-h GPS relocation data and three simple movement metrics, training a random forest on cows that successfully reared their calf to a week old.

Results

We developed a decision rule based upon a predicted probability threshold across individual cow time series, accurately classifying 89.5% (51/57) of cows with a known reproductive status. When used to infer status of …

Assessment Of The Negative Role Amur Honeysuckle Has On Urban Forest Diversity, Hayley Schlabowske, Paige Lundborg, Jason Koontz, Michael Reisner

Independent Research Projects

Lonicera maackii (Amur Honeysuckle), an invasive shrub species, has out-competed native species in urban riparian zones for decades due to its ability to receive more sunlight and it also secretes an allelochemical from its leaves that negatively impacts the ecosystems. Our research question is how does Lonicera maackii affect native plant species in the herbaceous understory? Five forest communities were sampled in Northwest Illinois. Sites were separated into four different categories with L. maackii only, Garlic Mustard (Alliaria petiolata) only, Neither invasive species, and sites where both occur. There were 12 sites for each of the four categories resulting in …

Ms Environmental Biology Capstone Project, Dylan Brown

Regis University Student Publications (comprehensive collection)

Chapter 1- Revisiting Tamarisk Invasion in Riparian Ecosystems: An Argument Against Single Species Management of the Southwestern Willow Flycatcher (Empidonax traillii extimus)

Chapter 2- Temporal Trends of Tamarisk Remediation to Native Vegetation Establishment

Chapter 3- Assessing Effectiveness of Tamarisk Removal Treatments Through a Meta Regression Analysis

Chapter 4- Legal Challenges of Tamarisk Removal in the Southwestern United States