Biology Commons^™

Effects Of Ecological Restoration Techniques In Glen Canyon National Recreation Area, Simone Ka-Voka Jackson

UNLV Theses, Dissertations, Professional Papers, and Capstones

A better understanding of key ecological restoration techniques can inform land management in the Southwest on restoration options for areas infested by invasive grasses that can pose threats to ecosystems, from changes in nutrient cycling to altered fire regimes. In the semi-arid desert of Glen Canyon National Recreation Area (GLCA), several exotic grasses pose risks to local ecosystems: Saccharum ravennae, a relatively new invasive perennial grass, and Bromus rubens and Bromus tectorum, widespread annual grasses. In this study, multiple ecological restoration techniques were implemented to assess their effects on native and nonnative vegetation on sites invaded by the non-native grasses …

Assessing Minimal-Input Restoration Strategies For Desert Soil And Vegetation Restoration, Audrey Jean Rader

UNLV Theses, Dissertations, Professional Papers, and Capstones

The Mojave and Sonoran Deserts have been negatively impacted by anthropogenic disturbances. Considering that these ecosystems may recover on millennial timescales, research has shown that restoration techniques can be fairly successful in initiating long-term recovery processes in these sensitive environments. However, uncertainty remains as to which techniques are effective in different circumstances, such as in different climates or across different soil properties, and which techniques may best avoid unintended consequences, such as facilitating non-native plants. To reduce fugitive dust as a human health hazard, increase soil stability, and enhance wildlife habitat, further work is necessary to develop restoration techniques for …

Effects Of Experimental Forest Management On Avian Communities In The Missouri Ozarks, David R. Hollie

Electronic Theses & Dissertations

In recent decades, concern for migratory birds has stimulated research assessing the relationships between forest management and bird populations. The Missouri Ozark Forest Ecosystem Project (MOFEP) is a long-term, landscape-scale experiment designed to examine the effects of even-aged (i.e. clearcutting), uneven-aged (i.e. selection cutting), and no harvest forest management on ecosystem level processes. The management systems were randomly assigned to three sites each (mean area = 400 ha) under a 100-year rotation with a 15-year re-entry period.

In the first chapter, we used non-metric multidimensional scaling and generalized linear mixed models to investigate the effects of silvicultural treatment and year-since-harvest …

Presence And Distribution Of Leptodactylus Guianensis Heyer And De Sa, 2011 In Colombia: Comparisons With Other Species In The L. Latrans Group., Mariela Osorno Muñoz, Doris L. Gutiérrez-Lamus, Rafael O. De Sá

Biology Faculty Publications

Leptodactylus guianensis is reported for the first time for Colombia along with a distributional map of the species. The species is the fifth species of the L. latransspecies group documented in the country. Males possess a single, conical and slightly chisel-shaped thumb spine; only three species in the group have a single thumb spine. In collections, specimens of L. guianensis are misidentified as L. macrosternum, L. latrans or L. bolivianus. We provide morphological, colouration and habitat descriptions for where the species occurs in Colombia.

Ecomorphological Variation Among Redbreast Sunfish Populations Of The South-Eastern United States, Grayson Ariel Walker

Honors College Theses

Individual populations of a species will morphologically adapt to their surrounding environment. It has been noted in the past that when species are placed under similar environmental conditions, they will evolve similar morphological structures and shape variation to overcome those obstacles. Redbreast sunfish (Lepomis auritus) were sampled from three different ecoregions (mountainous, Piedmont, and coastal plain) of 4 different isolated river basins in the southeastern North America. It was hypothesized that across basins, populations would show convergent morphological adaptations to mountain, piedmont, and coastal plain condition. I indexed using site elevation as an independent variable, serving as a …

Phylogeny Of The Australian Solanum Dioicum Group Using Seven Nuclear Genes: Testing Symon’S Fruit And Seed Dispersal Hypotheses., Christopher T. Martine, Ingrid E. Jordon-Thaden, Angela J. Mcdonnell, Jason T. Cantley, Daniel S. Hayes, Morgan D. Roche, Emma S. Frawley, Ian S. Gilman, David C. Tank

Faculty Journal Articles

The dioecious and andromonoecious Solanum taxa (the “S. dioicum group”) of the Australian Monsoon Tropics have been the subject of phylogenetic and taxonomic study for decades, yet much of their basic biology is still unknown. This is especially true for plant-animal interactions, including the influence of fruit form and calyx morphology on seed dispersal. We combine field/greenhouse observations and specimen-based study with phylogenetic analysis of seven nuclear regions obtained via a microfluidic PCR-based enrichment strategy and high-throughput sequencing, and present the first species-tree hypothesis for the S. dioicum group. Our results suggest that epizoochorous trample burr seed …

Co-Occurrence Of Manganese Oxidase Genes Indicates Lateral Transfer Between Classes Of Proteobacteria, Jacob Olichney

Student Scholar Showcase

Pseudomonas putida GB-1 is a model organism for the study of manganese oxidation in bacteria, however, the frequency of co-localization of multiple known and suspected manganese oxidizing proteins, as well as their occurrence between species, is unknown. Eight different genes isolated from known manganese oxidizing bacteria (MnxG, MopA, McoA, PputGB1_2552, PputGB1_2553, MoxA, MofA, and Bacillus MnxG) were tested individually using BioPython and BLAST (Basic Local Alignment Search Tool) on multiple genomic databases. BLAST searches had an expect value cutoff of 1e-50, limiting gene homologs to those with high sequence similarity. The abundance of homologous genes across classes of proteobacteria point …

Identification Of Bird-Associated Nonpoint Sources Of Microbial Contamination In Sediments, Savannah D. Mullins

Honors College Theses

Fecal indicator bacteria (FIB), such as Enterococci, are commonly used to monitor the microbial contamination of recreational beach waters based on standards set by the United States Environmental Protection Agency. Sediment and sand may also harbor FIB and reintroduce these bacteria to the water column. Enterococci may be originated from various non-point sources such as humans and wildlife. Recent literature has shown that avian feces also harbor high concentrations of Enterococci. The purpose of this study is identify the relationship between Enterococci and avian-associated markers in sediments. Sediment samples were collected monthly from four sites at Kings Ferry Beach in …

Comparing Feeding Accuracy Between High And Low Predation Trinidad Guppies, Lydia J. Bonnell

Honors College Theses

Efficient feeding accuracy could increase an organism’s survival. Although local adaptation in Trinidad guppies is common, the effects on accuracy are unknown. Guppies were wild caught in 2015 and 2017, filmed while capturing prey. Accuracy wasn’t different within samples but differed across samples, possibly due to the prey types used.

Quantifying Atlantic Sea Scallop (Placopecten Magellanicus) Larval Abundance Throughout Cape Elizabeth, Maine, Hannah Haskell, Britney Evangelista, Alex Loftis

Thinking Matters Symposium Archive

As markets for the Atlantic Sea scallop are growing, the need for sustainable and reliable harvesting methods such as aquaculture is more imperative than ever. Due to the difficulty of maintaining sea scallop hatcheries, scallop farmers typically collect larvae from the ocean and raise them until a marketable size on lease sites. In order to efficiently collect scallop larvae, being able to predict when the larvae are most abundant in the water column is crucial. The goal of our research was to learn when scallop larvae are most abundant in the water column and to determine if there is a …

Functional Feeding Groups Of Aquatic Macroinvertebrates On Natural And Artificial Leaves In Forested Stream Habitats In The Sebago Lake Land Reserve, Sam H. Matey, Kala Freytag Wistar

Thinking Matters Symposium Archive

We investigated preferential insect colonization of natural versus artificial leaves in forested streams to determine the impact of invertebrate-substrate associations on macroinvertebrate community composition and ecosystem nutrient cycling. We created 10 onion bags filled with natural maple leaves and 10 filled with artificial maple leaves, and placed 5 of each in two forested streams, one larger and one smaller, in the Sebago Lake Land Reserve in Standish, Maine. We identified the aquatic macroinvertebrates found on these samples after approximately one month to order-level and used Maine DEP biomonitoring data and functional feeding group taxonomies to classify macroinvertebrates by functional feeding …

Exploring The Effects Of Dam Removals On Zooplankton In Penobscot Estuary, Erin Bucci, Karen Wilson

Thinking Matters Symposium Archive

Estuaries provide many ecosystem services such as buffering the negative impacts of storms, offering recreation and commercial fishing opportunities, and they serve as a critical habitat corridor for migratory fish. In New England, estuarine habitats have been dramatically altered over the last 200 years due to dam construction; migratory fish such as Atlantic salmon and alewives have suffered. Recently, there have been several dam removal projects in Maine aimed to restore these populations – the largest of these efforts being the Penobscot River Restoration Project. In 2013, two dams were removed from the Penobscot River Estuary, opening more than 2,000 …

Speciation Rate Is Independent Of The Rate Of Evolution Of Morphological Size, Shape, And Absolute Morphological Specialization In A Large Clade Of Birds, Nicholas Crouch, Robert Ricklefs

Biology Department Faculty Works

Whether ecological differences between species evolve in parallel with lineage diversification is a fundamental issue in evolutionary biology. These processes might be connected if conditions that favor the proliferation of species, such as release from competitors, facilitate the evolution of novel ecological relationships. Despite this, phylogenetic studies do not consistently identify such a connection. Conversely, if higher diversity caused species to become increasingly specialized ecologically, then lineage diversification might become dissociated from ecological diversification. In this analysis, we ask whether the rate of lineage diversification in a large clade of birds is correlated with morphological specialization and with rates of …

A Phylogenetic Analysis Of Bostrichoidea (Coleoptera) And Revisions Of The Southern African Spider Beetle Genera Meziomorphum And Eutaphroptinus (Ptinidae: Coleoptera), Olivia M. Gearner

Masters Theses & Specialist Projects

Proposals for the internal relationships and classification of the bostrichoids are currently poorly supported, and almost all are based on morphology alone. This study improves upon on previous phylogenetic analyses of the group by including more taxa using the standard genes for many phylogenetic analyses. Cytochrome C oxidase subunit 1 (CO1), 28S small subunit rRNA, and 16S small subunit rRNA mitochondrial genes were sequenced or obtained from Genbank, then analyzed using parsimony and Bayesian analyses. Topologies differed depending on genes used. A three gene tree and a two gene (28S and CO1) tree both supported relationships in which a basal …

Effects Of Increased Precipitation On The Life History Of Spring- And Autumn-Germinated Plants Of The Cold Desert Annual Erodium Oxyrhynchum (Geraniaceae), Yanfeng Chen, Xiang Shi, Lingwei Zhang, Jerry M. Baskin, Carol C. Baskin, Huiliang Liu, Daoyuan Zhang

Biology Faculty Publications

Future increased precipitation in cold desert ecosystems may impact annual/ephemeral plant species that germinate in both spring and autumn. Our primary aim was to compare the life history characteristics of plants from spring-germinating (SG) and autumn-germinating (AG) seeds of Erodium oxyrhynchum. Plants in field plots with simulated increases in precipitation of 0, 30 and 50 % in spring and summer were monitored to determine seedling survival, phenology, plant size, seed production and biomass accumulation and allocation. Germination characteristics were determined in the laboratory for seeds produced by plants in all increased precipitation treatments. Increased precipitation in spring significantly improved survival …

Changes In Spring Arrival Times: Climate Change And The Phenology Of Spring Bird Migration, Aaron Svedlow

Student Scholarship

Climate change and weather affect the phenology of bird migration; however, specific climatological factors associated with these observed effects have only recently been described. The relationship between local, regional, and global climate patterns and avian migration are increasingly important to understand due to the widespread, and potentially negative, implications (such as reduced fecundity) of rapid human induced climate change on bird populations. Migratory birds are under selective pressure to arrive at breeding areas at the optimal time to set up nesting territories and exploit seasonally abundant food resources, and because climate change has the potential to occur more rapidly than …

Zero Textbook Cost Syllabus For Env 3009/4900 (Conservation Biology And Sustainable Development), Stephen Gosnell

Open Educational Resources

Conservation biology is an interdisciplinary topic that explores how we can protect and maintain natural areas. Due to the resources we take and impacts we have on natural environments, this field is directly related to restoration ecology (restoring natural areas) and sustainable development/natural resource management. We will explore the basis for these related fields from an ecological, social, legal, and cultural perspective, as all conservation and management projects take place in the larger human landscape. We will consider how we measure biodiversity, why it matters, why is it is threatened, and how we can manage (protect, restore, maintain, use) it …

Plant Mitochondrial Genome Evolution And Structure Has Been Shaped By Double-Strand Break Repair And Recombination, Emily Wynn

School of Biological Sciences: Dissertations, Theses, and Student Research

Plant mitochondrial genomes are large but contain a small number of genes. These genes have very low mutation rates, but genomes rearrange and expand at significant rates. We propose that much of the apparent complexity of plant mitochondrial genomes can be explained by the interactions of double-strand break repair, recombination, and selection. One possible explanation for the disparity between the low mutation rates of genes and the high divergence of non-genes is that synonymous mutations in genes are not truly neutral. In some species, rps14 has been duplicated in the nucleus, allowing the mitochondrial copy to become a pseudogene. By …

The Ecological Niche Of Echinococcus Multilocularis In North America: Understanding Biotic And Abiotic Determinants Of Parasite Distribution With New Records In New Mexico And Maryland, United States, Sebastian Botero-Cañola, Altangerel Tsogtsaikhan Dursahinhan, Sara E. Rácz, Parker V. Lowe, John E. Ubelaker, Scott Lyell Gardner

Scott L. Gardner Publications

English abstract: Understanding the factors shaping the niche of parasites and its expression over geographical space and through time continues to be a modern scientific challenge with the results of research in this area directly influencing both theoretical and applied biology. This is especially important for proactive management of zoonotic parasites such as Echinococcus multilocularis, the etiologic agent of alveolar echinococcosis. Echinococcus multilocularis has a Holarctic distribution; with its geographic range and prevalence increasing recently in areas of the western Palearctic, while its distribution dynamics are poorly understood in the Nearctic. In this paper, we use an ecological niche …

Cryptic Herbivorous Invertebrates Restructure The Composition Of Degraded Coral Reef Communities In The Florida Keys, Florida, Usa, Angelo Jason Spadaro

Biological Sciences Theses & Dissertations

Coral reefs have been on a trajectory of decline for nearly a century due to a variety of factors that have contributed to the shift in these communities away from dominance by reef-building corals, with commensurate changes on community composition and function. Florida’s reefs are a compelling example of a degraded system that has undergone a phase shift, and thus offered an excellent model system for my study of the effects of grazing by cryptic herbivores on community composition and their potential restoration value. I had four major objectives: (1) determine the suitability of Maguimithrax spinosissimus for manipulating grazing intensity …

Agro-Morphological Characterization Of The Wild Rice (Oryza Longistaminata) Populations From Selected Areas Of Tanzania, Hashim M. Mangosongo, Herbert V. Lyaruu, Emmarold E. Mneney

Tanzania Journal of Science

The study assessed the variations in ten agro-morphological characters among and within the wild rice (O. longistaminata) populations from four selected areas, namely Bagamoyo, Kibaha, Kilombero and Mbarali in Tanzania. The study was carried out through measurement of ten quantitative agro-morphological characters, based on morphological descriptors for wild and cultivated rice species developed by Bioversity International and International Rice Research Institute (IRRI). Measurement of morphological characters of O. longistaminata plants was done soon after heading. One-way Analysis of Variance (ANOVA) was used to compare the variations in quantitative characters between O. longistaminata populations from the four study areas. The results …

Genomics Based Approaches To Fungal Evolution, Aaron J. Robinson, Donald O. Natvig

Biology ETDs

Advances in DNA sequencing and data analysis make it possible to address questions in population genetics and evolution at the genomic level. Fungi are excellent subjects for such studies, because they are found in diverse environments, have short generation times, can be maintained in culture and have relatively small genomes. My research employed genetic approaches using a variety of sequencing technologies and methods of analysis to explore questions in fungal evolution.

In one study, I explored the genetics behind differences in thermotolerance between isolates of Neurospora discreta from Alaska and New Mexico. Isolates from the two states exhibited differences in …

Breeding Record Of The Hooded Vulture Necrosyrtes Monachus (Timminek, 1823) At Emi Abumo Woro, Kogi State, Nigeria, K. L. Adang, D. Tanko, K. L. Saliu, Umarfarooq Abdulwahab

Watershed Sciences Student Research

The hooded vulture Necrosyrtes monachus is a critically endangered species and recently published evidence suggests that its population is experiencing an extremely rapid decline, owing to indiscriminate poisoning, trade for traditional medicine, hunting, persecution, electrocution, habitat loss and degradation. As a result of these threats, the species is gradually disappearing from its range and thus, the sighting of vultures or their nests is becoming very rare. This paper thus, presents a report on the sighting of the Hooded Vulture and its nest at Emi Abumo Woro Village, Kogi State, Nigeria. This is an evident and equally an indication that Emi …

The Accelerating Influence Of Humans On Mammalian Macroecological Patterns Over The Late Quaternary, Felisa A. Smith, Rosemary E. Elliott Smith, S. Kathleen Lyons, Jonathan L. Payne, Amelia Villaseñor

School of Biological Sciences: Faculty Publications

The transition of hominins to a largely meat-based diet ~1.8 million years ago led to the exploitation of other mammals for food and resources. As hominins, particularly archaic and modern humans, became increasingly abundant and dispersed across the globe, a temporally and spatially transgressive extinction of large-bodied mammals followed; the degree of selectivity was unprecedented in the Cenozoic fossil record. Today, most remaining large-bodied mammal species are confined to Africa, where they coevolved with hominins. Here, using a comprehensive global dataset of mammal distribution, life history and ecology, we examine the consequences of “body size downgrading” of mammals over the …

Population Dynamics And Demographics Of Spotted Seatrout, Cynoscion Nebulosus, Through Spatial Analysis: Towards An Integrative Management Approach, Ashley Melancon Baer

LSU Doctoral Dissertations

Spotted seatrout (Cynoscion nebulosus) is one of the most highly prized sportfish along the Gulf of Mexico coast, particularly in Louisiana. Although spotted seatrout are considered to be well managed and sustainably fished according to the state’s most recent stock assessment, the spatial ecology of this species is largely understudied in Louisiana waters. Acoustic telemetry is an innovative technology that is commonly used to assess the movements and behavior of aquatic species, and can be used as a tool to address the paucity of information on the spatial dynamics of spotted seatrout. The focus of this study was …

Sustainable Agriculture Lesson For Middle School Classrooms, Sara Colombe, Madhav P. Nepal, Jennifer Mclaughlin, Matthew L. Miller, Larry B. Browning, P. Troy White

iLEARN Teaching Resources

In this lesson, students will learn about sustainability, where farmers/agriculturists can meet the needs of food, fiber, and fuel for the growing population. Students learn about growing population, its growth rate, major food source, sustainability barrel, potential ripple effects of positive impacts as well as the food waste and its effects.

Effects Of Rangeland Management On Milkweed Grazing And Monarch Conservation, Brittany Poynor

UNO Student Research and Creative Activity Fair

Cattle typically avoid consuming milkweed plants that contain high levels of toxic defense compounds, and therefore many people assume cattle avoid all milkweeds. However, common milkweed (Asclepias syriaca) contains only moderate levels of toxic compounds, and observations suggest that cattle regularly consume common milkweed and may even preferentially graze flowers and leaves of this species. These observations directly relate to efforts to add over one billion stems of milkweed to the central USA for monarch butterfly (Danaus plexippus) conservation. If cattle intentionally consume common milkweed and other milkweed species, and if certain management practices can reduce …

Reply To: “Global Conservation Of Phylogenetic Diversity Captures More Than Just Functional Diversity”, Florent Mazel, Matthew W. Pennell, Marc W. Cadotte, Sandra Diaz, Giulio Valentino Dalla Riva, Richard Grenyer, Fabien Leprieur, Arne O. Mooers, David Mouillot, Caroline M. Tucker, William D. Pearse

Ecology Center Publications

Academic biologists have long advocated for conserving phylogenetic diversity (PD), often (but not exclusively) on the basis that PD is a useful proxy for “feature diversity”, defined as the variety of forms and functions represented in set of organisms (see below for an extended discussion of this definition). In a recent paper, we assess the extent to which this proxy (which we coined the “phylogenetic gambit”) holds in three empirical datasets (terrestrial mammals, birds, and tropical marine fishes) when using functional traits and functional diversity (FD) to operationalize feature diversity. Owen et al. offer a criticism of our methods for …

The Efficacy Of Whole Human Genome Capture On Ancient Dental Calculus And Dentin, Kirsten A. Ziesemer, Jazmin Ramos-Madrigal, Allison E. Mann, Bernd W. Brandt, Krithivasan Sankaranarayanan, Andrew T. Ozga, Menno Hoogland, Courtney A. Hofman, Domingo C. Salazar-Garcia, Bruno Frohlich, George R. Miller, Anne C. Stone, Mark Aldenderfer, Cecil M. Lewis Jr., Corinne L. Hofman, Christina Warinner, Hannes Schroeder

Biology Faculty Articles

Objectives

Dental calculus is among the richest known sources of ancient DNA in the archaeological record. Although most DNA within calculus is microbial, it has been shown to contain sufficient human DNA for the targeted retrieval of whole mitochondrial genomes. Here, we explore whether calculus is also a viable substrate for whole human genome recovery using targeted enrichment techniques.

Materials and methods

Total DNA extracted from 24 paired archaeological human dentin and calculus samples was subjected to whole human genome enrichment using in‐solution hybridization capture and high‐throughput sequencing.

Results

Total DNA from calculus exceeded that of dentin in all cases, …

Spatial And Temporal Variability In Post-Larval Yellow Perch Density, Steve Hauschildt

Biology Graduate Theses

Yellow Perch Perca flavescens are important as forage for other species and for sport fishing in many northern lakes. However, estimating post-larval Yellow Perch populations can be difficult because of many environmental factors that cause unexplained variation. The objective of this study was to help reduce unexplained variation by determining a post-larval Yellow Perch population density estimate on Blackduck Lake, MN, provide guidance to help determine the number of trawls required for trawling-based recruitment indices to achieve varying levels of precision, and test for the effects of wind speed and direction on post-larval Yellow Perch spatial variability. This study estimated …