Biology Commons^™

Broadening The Ecological Mindset, Ellison M. Aaron, Audrey A. Barker Plotkin, Manisha V. Patel, Sydne Record

Biology Faculty Research and Scholarship

Over the past three decades, the Harvard Forest Summer Research Program in Ecology (HF-SRPE) has been at the forefront of expanding the ecological tent for minoritized or otherwise marginalized students. By broadening the definition of ecology to include fields such as data science, software engineering, and remote sensing, we attract a broader range of students, including those who may not prioritize field experiences or who may feel unsafe working in rural or urban field sites. We also work towards a more resilient society in which minoritized or marginalized students can work safely, in part by building teams of students and …

Residual Spatial Autocorrelation In Macroecological And Biogeographical Modeling: A Review, Guetchine Gaspard

Theses and Dissertations--Geography

Macroecological and biogeographical modelers have predicted the distribution of species across space relying on the relationship between biotic processes and environmental variables. Such a method employs data associated, for instance, with species abundance or presence/absence, climate, geomorphology, and soils. Statistical analyses found in previous studies have highlighted the importance of accounting for the effects of spatial autocorrelation (SAC), which indicates a level of dependence between pairs of nearby observations. A consensus has existed that residual spatial autocorrelation (rSAC) can substantially impact modeling processes and inferences. However, more emphasis should be put on identifying the sources of rSAC and the degree …

Habitat Selection By Vulnerable Golden Bandicoots In The Arid Zone, Cheryl A. Lohr, Kristen Nilsson, Colleen Sims, Judy Dunlop, Michael T. Lohr

Research outputs 2014 to 2021

In 2010, vulnerable golden bandicoots (Isoodon auratus) were translocated from Barrow Island, Western Australia, to a mainland predator-free enclosure on the Matuwa Indigenous Protected Area. Golden bandicoots were once widespread throughout a variety of arid and semiarid habitats of central and northern Australia. Like many small-to-medium-sized marsupials, the species has severely declined since colonization and has been reduced to only four remnant natural populations. Between 2010 and 2020, the reintroduced population of golden bandicoots on Matuwa was monitored via capture–mark–recapture data collection, which was used in spatially explicit capture–recapture analysis to monitor their abundance over time. In 2014, we used …

Natural Habitat Of Bali Starling (Leucopsar Rothschildi) In Bali Barat National Park, Indonesia, Sutomo Sutomo, Eddie Van Etten

Research outputs 2014 to 2021

The Indonesian tropical savannas and dry forests provide habitats to various endemic wildlife. Unfortunately, a few of these endemic species are now seriously threatened and are red listed in the conservation status of International Union for Conservation of Nature (IUCN). Among these species, the Bali starling or Bali mynah Leucopsar rotschildi, locally known as Jalak Bali, is now mostly restricted to the Bali Barat National Park. Given the high extinction risk faced by such species, conservation programs require multidisciplinary approaches that would address both the biological attributes of the species itself and their habitat requirements. Regrettably, for many species, their …

Does Experimentally Quieting Traffic Noise Benefit People And Birds?, Mitchell J. Levenhagen, Christopher J.W. Mcclure, Jesse R. Barber

Biology Faculty Publications and Presentations

Protected natural areas are not free from noise, especially noise generated by traffic within park boundaries. Natural soundscapes are important for maintaining community structure, providing positive visitor experiences, and increasing visitor support for management actions that reduce impacts on natural resources. To test experimental quieting as a strategy to increase both wildlife habitat quality and visitor experience, we enforced decreased speed limits and presented educational signage to reduce sound levels along a road system in an alternating, on–off block design within Grand Teton National Park, Wyoming, USA. We continuously recorded background sound levels while conducting bird space use assessments and …

Assessing The Role Of Disturbance In Estuarine Fish Community Dynamics, Dakota Lewis

Electronic Theses and Dissertations, 2020-2023

Ecological disturbances alter biotic communities and ecosystems. In many coastal zones disturbances are increasing, including algal blooms, storms, hypoxic events, and fish kills. These disturbances are often related, for example blooms releasing toxins or depleting dissolved oxygen, ultimately killing fish. Depending on the intensity, duration, and geographic extent of a disturbance, the fish community can take days to years to recover from disturbances. To explore the relationships among environmental disturbances, sport fish, and forage fish communities, this thesis examined two Florida estuaries with differing disturbance regimes. Using an ensemble modelling approach combining generalized linear models (GLM), Bayesian modelling, and Bayesian …

Lepidopteran Granivory Reduces Seed Counts In A Rare Species Of Riparian Scour Prairies, Cheyenne Moore, Angela J. Mcdonnell, Scott Schuette, Christopher T. Martine

Faculty Journal Articles

In Pennsylvania Baptisia australis var. australis is found along only four waterways: the Allegheny River, Youghiogheny River, Clarion River, and Red Bank Creek. Because of its limited distribution and small number of extant populations, the species is considered state-threatened in Pennsylvania. In addition, the riparian prairie habitat that Pennsylvania Baptisia australis var. australis is restricted to is also in decline and considered vulnerable. Because of these conservation concerns, insights into the natural history of the taxon in the state is valuable and will inform conservation efforts. Field surveys and fruit collections along the Allegheny River and herbarium collections were used …

Invasive Bullfrogs Maintain High Levels Of Immune Gene Diversity Despite Elevated Bd Infection Relative To Native Populations, Jacob Lafond

Electronic Theses and Dissertations, 2020-2023

Maintenance of genetic diversity at ecologically-relevant loci may be important for allowing invasive populations to become established despite decreases in genomic diversity due to founder effects. To evaluate this prediction, we compared genetic diversity at an expressed MHC class IIß gene fragment to a 909 bp region of the neutral cytochrome b (cytb) locus from 20 populations of the American bullfrog (Rana catesbeiana) across its North American invasive and native ranges and quantified the presence of Batrachochytrium dendrobatidis (Bd), a pathogen, for which R. catesbeiana is a vector species. We recovered 28 unique MHC alleles and found that invasive populations …

Evaluation Of Methods For The Restoration Of Native Grasslands On Abandoned Center Pivots In The Sandsage Prairies Of Southwestern Kansas, Alonso Barragan-Martinez

Master's Theses or Doctor of Nursing Practice

Throughout southwestern Kansas thousands of acres of native grassland have been converted to cropland for agricultural use, reducing native prairie by over 60% in the sandsage prairie. Due to low precipitation and arid conditions, much of these croplands are irrigated by center pivot irrigation systems fed by the Ogallala Aquifer. These fields are abandoned when the aquifers dry up, resulting in erosion of the unused farmland. Conservation programs such as the Conservation Reserve Enhancement Program (CREP) were established to address this problem but have been unsuccessful in restoring native grasslands in abandoned croplands in southwestern Kansas. We hypothesized that insect …

Cost Of Co-Infection In Peromyscus Leucopus Mice, Ananya Sagar

Scripps Senior Theses

Abstract

Co-infections occur frequently across humans & wildlife, and can have effects on host health. Despite the prevalence of microparasite-helminth co-infections, majority of the research focuses either on singular infections or on concurrent infections in a laboratory setting. This fails to take into account the interspecific interactions between the multiple parasites and the host in natural settings. The interactions could be direct by resource competition, or indirect via the host immune system. In our research, we studied the relationship between nematodes and coccidia in their host, Peromyscus leucopus mice, at the Mountain Lake Biological Station, Virginia. We further evaluated the …

Importance Of Instream Habitat To Recruitment And Community Structure Of Aquatic Invertebrates, Catherine R. Billé

Master’s Theses

This thesis investigates how mechanisms of colonization by aquatic insects, both by ovipositing adults and or larval drift, operate at either micro-, meso-, or macro-scales to influence larval community assemblage in streams. Our study took place in a forested floodplain stream characterized by uniform soft clay and loose detritus substrate. Within this study reach we built three sets of riffles, with each set comprised of three identical riffles built either 15, 10, or 5 m apart. We examined microscale influences on community assemblage by studying recruitment of egg masses to our constructed riffles. We found that riffle habitat additions were …

An Evaluation Of Antiparasitics Used To Treat The Sea Louse, Caligus Rogercresseyi, In Chilean Salmonid Farming, Dayla Woller

Scripps Senior Theses

Sea lice pose a global threat to open-net salmonid farming. As Chile is the second largest Atlantic salmon producer, they have a vested interest in mitigating infestations and increasing production. However, this will not be possible without 1) increased research on the underlying mechanisms behind sea lice infestations that will inform 2) governmental regulation of salmon farming. This increase in research and governmental regulation will only be possible through transparency on pesticide practices and sea louse monitoring data from companies operating in Chile. Taking these steps would bring Chile closer to being the largest producer of Atlantic salmon and an …

Factors Influencing Aquatic Invertebrate Diversity In Mine Pit Lakes Along The Mesabi Iron Range, Jeremy Laurich

Journal of Earth and Life Science

Restoration of mine pit lakes for recreation is going to be very important for the future of Minnesota’s Mesabi Iron Range area. As many as 250 lakes will need to be restored in the future along this 100-kilometer-long swath of mining country. Information regarding the organisms that currently inhabit these lakes is important for future restorations to be a success. The focus of this study was to identify the types of aquatic invertebrates present in pit lakes and to identify some of the factors that influence their abundance and diversity. During this study, invertebrate samples were taken along the shore …

Is There A Relationship Between Aquatic Vegetation And Amphipod Stocking Mortality?, Alaina Taylor

Journal of Earth and Life Science

Amphipod occurrence and abundance has declined in the Prairie Pothole Region (PPR). Wildlife managers have stocked prairie pothole wetlands with Gammarus lacustris since 2018 to establish self-sustaining populations. G. lacustris have been detected in only 2 of 22 stocked basins, suggesting that they have died or failed to reproduce in most stocking attempts. Aquatic plant surveys were conducted in stocked wetlands and compared to data from surveys of wetlands with naturally occurring populations to understand if G. lacustris would be expected to survive in stocked wetlands based on characteristics of the aquatic vegetation communities. SAV coverage was significantly higher in …

Predicting Total Length Of Fish In Minnesota Lakes Using Bony Structure Dimensions, Jay Holland

Journal of Earth and Life Science

This study seeks to establish a relationship between a fish’s total length to the size of various bony structures of prey fishes. Three important prey fish species in Minnesota were selected for examination in this study, including Black Crappie Pomoxis nigromaculatus, Bluegill Lepomis macrochirus, and Yellow Perch Perca flavescens. Length and weight dimensions of each fish’s otoliths, cleithra, and vertebrae were associated to total lengths of the fish they came from. In many dietary studies, the need for these relationships is strongly related to the disfigurement or degradation of prey fish in stomach samples. With accurate enough regression equations, researchers …

Abiotic Factors Effect On Summertime Fish Sampling, Kyle Oxley

Journal of Earth and Life Science

Fish surveys are vital in understanding various information about a fishery. Surveys lay the groundwork to how an agency views the status of the fishery, are used to set appropriate regulations, and manage stocking. Understanding which areas of a fishery holds the greatest density of fish is key to achieving the most accurate sample that reflects the fishery. The objective of this study was to track fish densities throughout the summer of 2021 and establish if there is a relationship between high fish density locations and specific water column characteristics. Fish density, temperature, and dissolved oxygen were measured bimonthly at …

Burbot Post-Spawn Diet, Madison Gibson

Journal of Earth and Life Science

Burbots have become an increasingly popular game fish among anglers and have become a strong predator within the systems, consuming a wide variety of organisms. Therefore, the objective of this study was to compare male and female burbots diets post-spawn in a system. Burbots angled from Bad Medicine Lake were sacrificed and the stomach contents were observed, categorized by the lowest taxonomic key, and then weighed in grams. Percent by weight was calculated for each category of organisms and presented in a pie charts. In all three analyses, crustaceans were the main source of the diet structure at more than …

Exploring The Genetic Variability Of Zebra Mussels Dreisenna Polymoprha, Maxwell Carr

Journal of Earth and Life Science

Zebra Mussels Dreisenna polymorpha are one of the most well-known invasive species here in the United States. This species can take over watersheds very quickly, causing damage to both the ecosystem and man-made structures. The basic physical behavior of this species has been well documented, but the invasive North American Zebra Mussel is much more aggressive and therefore causes more damage in the Great Lakes region compared to its native waters. Genetic variation may be playing a very large role in how and why D. polymorpha is causing such large problems for stakeholders in the United States. This review cites …

Effectiveness Of Endothall Treatment In Reducing Potamogeton Crispus In Lake Julia, Jake Sorensen

Journal of Earth and Life Science

Curly leaf pondweed Potamogeton crispus, is a submerged aquatic plant non-native to North America. It was most likely introduced when common carp Cyprinus carpio were intentionally brought to the Midwest. Endothall is an aquatic herbicide commonly used to control curlyleaf pondweed in lakes. This study focused on collecting data from Lake Julia in Sherburne County, MN. Lake Julia is treated annually in the spring to control curlyleaf pondweed. The results show treatment areas saw a significant increase in vegetation density compared to control areas (P < 0.01). Changes in percent vegetation coverage by date were insignificant (P = 0.24). No significant signs of fish kills were observed. Because this study looked at overall vegetation coverage instead of specifically curlyleaf pondweed, we cannot conclude the increase in vegetation coverage was from curlyleaf pondweed alone. Based on the results from Poovey et al. (2002) we would expect lower vegetation coverage in treatment areas instead of the increased vegetation coverage observed in our study. This suggests the possibility that the endothall treatment successfully killed curlyleaf pondweed in treated areas, which allowed for new growth of submerged aquatic plants to take place as water temperatures increased.

Initial And Advanced Stages Of Microbiota Establishment Within The Tsetse Fly, Miguel Eduardo Medina Munoz

Graduate Theses, Dissertations, and Problem Reports (ETD)

Symbiosis is a long-term physical association between two or more species, although little is known regarding its evolutionary origins, particularly at the genetic level. Tsetse flies are the vector of African trypanosomes, causative agents of Human and Animal African Trypanosomiases. Tsetse provide an ideal model for studying initial and advanced stages of symbiosis. Tsetse have a simple digestive tract microbiota primarily consisting of two bacteria; the ancient mutualist Wigglesworthia glossinidia and the recently acquired Sodalis glossinidius. This work presents a chronological study in evolutionary terms of the history of a microbial-insect association. First, I present concepts on symbiosis and …

Tree Species Influence On Microbial Functional Gene Abundance And N Cycling In Riparian Soil, Elizabeth Matejczyk

Graduate Theses, Dissertations, and Problem Reports (ETD)

Little is known about how above-ground vegetation may differentially influence the below-ground microbial community structure, abundance, and function. Abundance of soil microbial N cycling genes responsible for nitrification (amoA), denitrification (nirK and nirS), and nitrous oxide reduction (nosZ) may vary with tree species and increasing N availability, and these variables may be used to predict production of NO₃^- and N₂O from soil. Variability of nitrification and denitrification rates have also been linked to tree mycorrhizal associations, with soil beneath tree species associated with arbuscular mycorrhizal (AM) exhibiting greater denitrification rates …

The Evolution Of Technology, Kelly Cooper

Williams Honors College, Honors Research Projects

As per outlined by Dr. Quinn, this literature review will be a comprehensive review paper including an overview of current and previous research done in the field of Memetics. This will further include sifting through literature to hone in on a specific, new area of memetics Dr. Weeks is focused on, the evolutionary change of abiotic factors through purchasing. This is to be completed with the help of the library worshops designed to teach the skills necessary to undergo a literature review of this size. I will also participate in weekly reading groups to discuss papers and work closely with …

Long-Term Changes In Juvenile Green Turtle Abundance And Foraging Ecology In The Indian River Lagoon, Florida, Christopher Long

Electronic Theses and Dissertations, 2020-2023

Marine turtles are distributed in temperate, sub-tropical and tropical waters and beaches worldwide, often in areas heavily impacted by humans. Although there are many threats to marine turtle populations, the growing threats of nutrient pollution and harmful algal blooms are relatively understudied despite their widespread impacts on coastal marine ecosystems that marine turtles depend on. By studying juvenile green turtles (Chelonia mydas) in the Indian River Lagoon, Florida, where nutrient pollution and HABs are a widespread and longstanding issue, I aimed to conduct a case study of how these threats may affect this federally Threatened species. In Chapter 2, I …

The Social Behavior Of Pine Sawflies In The Genus Neodiprion, John W. Terbot Ii

Theses and Dissertations--Biology

Group living is found across the animal kingdom ranging from temporary mating aggregations to complex, eusocial lifestyles. A particularly common form of group living found among insects are larval or nymphal herds. This lifestyle consists of immature insects living together and results in several proposed costs and benefits. Benefits of this lifestyle include improved ability to regulate a group’s microenvironment, more efficient use of their host, and the ability to engage in collective predator defenses. Offsetting these benefits are costs resulting from living in close proximity to conspecifics which include increased competition, greater visibility to predators, and heightened disease risks. …

Solifuge (Camel Spider) Reproductive Biology: An Untapped Taxon For Exploring Sexual Selection, Alfredo V. Peretti, David E. Vrech, Eileen Hebets

Eileen Hebets Publications

The exploration of new and diverse animal groups in the study of sexual selection is both necessary and important to help better understand broad patterns and test sexual selection hypotheses regarding the evolutionary origins and maintenance of reproductive tactics and associated traits. Solifuges are, in this matter, an exceptional group and very little explored from the sexual selection point of view. At first glance, mating is apparently quite simple and conserved within this arachnid order, but solifuge reproductive behavior is unique among arachnids and more diverse than previously thought. In particular, these voracious animals appear to exhibit high sexual conflict, …

Spiders (Araneae) Collected As Prey By The Mud-Dauber Wasps Sceliphron Caementarium And Chalybion Californicum (Hymenoptera: Sphecidae) In Southeastern Nebraska1, Tyler B. Corey, Earl Agpawa, Eileen Hebets

Eileen Hebets Publications

Predator diets represent a potential interaction between local prey availability, prey antipredator defenses, and predator foraging behavior. Female spider-specialist muddauber wasps (Hymenoptera: Sphecidae) collect spiders and provision them intact, but paralyzed, to their developing larvae, providing a unique means of quantifying the diversity and abundance of prey that they capture. Mud-dauber wasps are hypothesized to be a major source of selection on antipredator defenses in web-building spiders, and the spiny and thickened abdomens of female spiny orb-weaving spiders (Araneae: Araneidae) are hypothesized to function as antiwasp defenses. We inventoried spider prey from nests of the mud-dauber wasps Sceliphron caementarium (Drury) …

Plant Physiological Responses To Environmental Change In A Marsh-Mangrove Ecotone, Matthew Sturchio

UNF Graduate Theses and Dissertations

Globally, photosynthesis (A) and autotrophic respiration (R) are the two largest physiological processes responsible for CO₂ flux. Coastal wetland ecosystems are responsible for some of the highest rates of C sequestration. Marsh grass and mangrove habitats responsible for this service are important in supporting biodiversity and preventing shoreline erosion, yet little is known about how this vegetation will respond physiologically to effects of climate and global change. In the first chapter a warming experiment was used to determine whether a C₄ marsh grass (Spartina alterniflora) and a C₃ mangrove (Avicennia …

Searching For Gold: Using A Novel Land Cover Classification To Identify Multiscale Drivers Of Site Occupancy By A Flagship Species For Early-Successional Habitat Conservation, Baron Lin

Theses and Dissertations

Understanding habitat selection at multiple scales is an important step in guiding conservation programs and reversing species declines. This, however, is difficult for species that occupy early-successional habitats (ESH) due to a lack of accurate representation of shrub cover in publicly available land cover data. The Golden-winged Warbler (Vermivora chrysoptera; GWWA) is a threatened species of conservation concern and a flagship for ESH conservation. We used a novel, LIDAR-derived land cover classification that accurately identifies shrubs at a fine resolution (1m) to investigate how habitat composition and configuration influence GWWA site occupancy. We aggregated this same land cover …

A Decision Tool To Identify Population Management Strategies For Common Ravens And Other Avian Predators, Andrea F. Currylow, Brenda J. Hanley, Kerry L. Holcomb, Timothy Shields, Stephen Boland, William I. Boarman, Mercy Vaughn

Human–Wildlife Interactions

Some avian species have developed the capacity to leverage resource subsidies associated with human manipulated landscapes to increase population densities in habitats with naturally low carrying capacities. Elevated corvid densities and new territory establishment have led to an unsustainable increase in depredation pressure on sympatric native wildlife prey populations as well as in crop damage. Yet, subsidized predator removal programs aimed at reducing densities are likely most effective longer-term when conducted in tandem with subsidy control, habitat management, and robust assessment monitoring programs. We developed decision support software that leverages stage structured Lefkovitch population matrices to compare and identify treatment …

Predation Threat In A Variable Landscape: Connecting Predation Risk To Nesting Success For The Seaside Sparrow (Ammospiza Maritima Macgilivraii), Corina D. Newsome

College of Graduate Studies: Theses & Dissertations

Predation, the leading cause of nest-failure in birds, not only exists as a direct threat to nesting success, but may exacerbate other sources of nest mortality. Birds inhabiting Atlantic coastal marshes, such as Seaside Sparrows (Ammospiza maritima; hereafter SESP), are experiencing significant and rapid changes to their habitat, particularly sea level rise (SLR) and encroaching urbanization, that may affect the relative influence of nest predation on overall productivity. For SESPs, SLR presents an inherent threat to nest success in its potential to increase the frequency of nest flooding. In addition to this direct threat, the ability of SESPs …