Biology Commons^™

The Role Of Backreef Soundscapes And Their Spatial Structure For Recruitment Of Tropical Marine Larvae, Emily R. Anderson

Biological Sciences Theses & Dissertations

Underwater sound is a cue used by many marine larvae to orient to coastal habitats including backreef, sponge-dominated hardbottom habitat in the Florida Keys (Florida, USA) – a particularly “noisy” coastal habitat. However, the distance over which acoustic cues are attractive to settlement-stage larvae - is generally unknown. I examined this phenomenon in a region of the Florida Keys where mass sponge die-offs have diminished both underwater soundscapes and larval settlement. The absence of pronounced hardbottom-associated sound over such a large area allowed me to experimentally test in situ the response of fish and invertebrate larvae to broadcasted sounds at …

Seed Rain–Successional Feedbacks In Wet Tropical Forests, Nohemi Huanca Nuñez, Robin L. Chazdon, Sabrina E. Russo

School of Biological Sciences: Faculty Publications

Abstract

Tropical forest regeneration after abandonment of former agricultural land depends critically on the input of tree seeds, yet seed dispersal is increasingly disrupted in contemporary human-modified landscapes. Here, we introduce the concept of seed rain–successional feedbacks as a deterministic process in which seed rain is shaped by successional dynamics internal to a forest site and that acts to reinforce priority effects. We used a combination of time series and chronosequence approaches to investigate how the quantity and taxonomic and functional composition of seed rain change during succession and to evaluate the strength of seed rain–successional feedbacks, relative to other …

A Spatially Explicit Model Of Stabilizing Selection For Improving Phylogenetic Inference, Jeremy M. Beaulieu, Brian C. O'Meara, Michael A. Gilchrist

Biological Sciences Faculty Publications and Presentations

Ultraconserved elements (UCEs) are stretches of hundreds of nucleotides with highly conserved cores flanked by variable regions. Although the selective forces responsible for the preservation of UCEs are unknown, they are nonetheless believed to contain phylogenetically meaningful information from deep to shallow divergence events. Phylogenetic applications of UCEs assume the same degree of rate heterogeneity applies across the entire locus, including variable flanking regions. We present a Wright-Fisher model of selection on nucleotides (SeION) which includes the effects of mutation, drift, and spatially varying, stabilizing selection for an optimal nucleotide sequence. The SeION model assumes the strength of stabilizing selection …

Morph- And Sex-Specific Differences In Corticosterone Of The Arizona Tiger Salamander (Ambystoma Mavortium Nebulosum), Megan Zerger

Scholars Week

Life history morph, sex, and body condition are traits that may influence stress within salamander populations because of differences in physiology and environmental conditions. Given widespread declines and the effects chronic stress can have on amphibian health, it is important to understand within-population drivers of stress and how population level variation may influence population viability. Thus, the objective of our study was to assess how corticosterone varies within the Arizona tiger salamander (Ambystoma mavortium nebulosum) population at the Mexican Cut Nature Preserve. We used a non-invasive skin swabbing method to collect baseline and elevated corticosterone from paedomorph (aquatic …

Epigenetic Potential In An Introduced Passerine, Haley E. Hanson

USF Tampa Graduate Theses and Dissertations

Epigenetic modifications play a critical role in numerous processes throughout the lifetime of an organism by influencing gene regulation. Responsive to both endogenous cues and external stimuli, epigenetic modifications are key mechanisms underlying phenotypic plasticity. Epigenetic potential, or the capacity for phenotypic plasticity mediated by epigenetic modifications, can be encoded within the genome via genetic variation underlying aspects of epigenetic modifications. For example, one type of epigenetic modification, DNA methylation, predominately occurs at CpG motifs in vertebrates. The number of CpG sites within the genome then represents the capacity for DNA methylation to occur and is one form of epigenetic …

Vertebrate Impact On A Newly Deployed Shoreline Stabilization Project By Wildlife Camera Analysis, Julia Rifenberg, Jason Litwak, Rebecca Fillyaw

The Pegasus Review: UCF Undergraduate Research Journal

Living shoreline stabilization is a technique that utilizes plants and other natural elements to protect estuarine coasts. Research has provided minimal information about which vertebrate species utilize living shorelines post-deployment. For this project, ten wildlife cameras were placed along a living shoreline site in Canaveral National Seashore (CANA) to document which vertebrate species utilize the living shoreline and surrounding vegetation. This shoreline was stabilized with red mangroves (Rhizophora mangle) and eastern oyster (Crassostrea virginica) shell bags in June 2019. The cameras, activated by motion sensors, remained at the site for five days a month for seven …

Non-Breeding Ecology Of Loggerhead Shrikes In An Intensive Agricultural Region, Emily Rose Donahue

Student Theses and Dissertations

As intensive agriculture has transformed much of the landscape across central North America, many grassland species have had to learn to adjust these new, highly homogeneous habitats while facing steep population declines. The Loggerhead Shrike (Lanius ludovicianus; hereinafter shrike) is one such declining species that persists in these agricultural landscapes. However, we lack information on the sustainability of these populations, and shrike non-breeding ecology, as for most passerines, remains understudied. Specifically, little is known about non-breeding behavior, diet, survival, site fidelity, and habitat selection. If survival, space use, and habitat selection metrics differ between demographic groups within non-breeding populations also …

Ecological Physiology Of Rafinesque’S Big-Eared Bats (Corynorhinus Rafinesquii) Roosting In An Anthropogenic Structure In Arkansas, Benjamin N. Spitz

Student Theses and Dissertations

Rafinesque’s big-eared bats (Corynorhinus rafinesquii) are suffering habitat loss due to deforestation of bottomland hardwoods which an increase in agriculture forces maternity colonies to roost in anthropogenic structures. In Arkansas I explore how bats from maternity colonies in anthropogenic structures use torpor and how torpor is affected by chronic stress and ectoparasites. During June- August of 2018-2019, I surveyed a maternity colony inside a barn. Captured bats were tagged with temperature-sensitive transmitters and tracked to roost trees and the barn daily confirming day roosts. Using Lotek data loggers, data from transmitters were collected as skin temperature and compared to ambient …

Local Adaptation To Continuous Mowing Makes The Noxious Weed Solanum Elaeagnifolium A Superweed Candidate By Improving Fitness And Defense Traits, Jesus Chavana, Sukhman Singh, Alejandro Vazquez, Bradley O. Christoffersen, Alexis Racelis, Rupesh R. Kariyat

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

The role of disturbance in accelerating weed growth is well understood. While most studies have focused on soil mediated disturbance, mowing can also impact weed traits. Using silverleaf nightshade (Solanum elaeagnifolium), a noxious and invasive weed, through a series of field, laboratory, and greenhouse experiments, we asked whether continuous mowing influences growth and plant defense traits, expressed via different avenues, and whether they cascade into offspring. We found that mowed plants produced significantly less number of fruits, and less number of total seeds per plant, but had higher seed mass, and germinated more and faster. When three herbivores …

The Effects Of Urbanization On Plant Biodiversity In Southeastern Virginia, Tess Hardesty

Undergraduate Research Symposium

This research project investigated the impacts of urbanization on plant species biodiversity within Southeastern Virginia. The hypothesized results of this research were if there was an increase in urbanization, then plant diversity would decrease. Plant biodiversity can increase the decomposition rates, pollination success, and biomass production of the area. Decreasing in plant biodiversity can increase the spread of pathogens through plant populations and increase herbivore damage. There was data compiled from SERNEC herbarium records of four counties, Accomack, Northampton, Norfolk, and Virginia Beach. Virginia Beach had the largest population increase, which was considered the measurement for urbanization in this study. …

Success Of Glover’S Reef Marine Reserve On Queen Conch (Strombus Gigas) Populations In Belize, Gianna Fanelli, Ciera Jarrett, Sara Joralemon

The Pegasus Review: UCF Undergraduate Research Journal

The queen conch (Strombus gigas) provides important economic, ecological, and societal benefits to local communities throughout the Caribbean. The species, however, has fallen victim to commercial exploitation and overfishing in many areas. In Belize, even with restricted harvesting seasons, size restrictions, and regulations set by the Convention on International Trade in Endangered Species (CITES), harvesting practices have significantly depleted populations. Marine reserves, including the Glover’s Reef Marine Reserve, were established to protect biodiversity and maintain populations of Belize’s natural coral reefs. Utilizing size, frequency, and evidence of harvesting (shell notches), the 2018 Tropical Marine Biology (BSC 3355) course …

The Distribution In Native Populations From Mexico And Central America Of The C677t Variant In The Mthfr Gene, Lucio A. Reyes

USF Tampa Graduate Theses and Dissertations

Objectives: To explore evolutionary hypotheses for the high frequencies of a substitution in the methylenetetrahydrofolate reductase (MTHFR) gene, in Mexican and Central American Indigenous populations.

Materials and methods: We obtained allele frequencies for the C677T variant in the MTHFR gene and ecological information for 37 indigenous samples from Mexico and Central America. We calculated Hardy–Weinberg equilibrium and computed Fst statistics. We computed correlations between the samples' allele frequencies and ecological and geochemical variables.

Results: Many of the samples have extremely high frequencies of the T allele (q̄ = 0.62, median = 0.66). In this region, the frequency of the T …

Shorebird Response To Human-Induced Changes At Three Pinellas County Beaches, Rebecca J. Ruthberg-Campagna

USF Tampa Graduate Theses and Dissertations

Worldwide, shorebird habitat is being destroyed and degraded by development and sea level rise. Shorebirds depend on availability of pristine, undisturbed coastal habitats for resting and feeding during migration as well as for reproduction. Migratory shorebirds using the East Atlantic Flyway visit the Gulf of Mexico Beaches of Pinellas County, Florida as a stopover site during Fall and Spring migration. In addition to hosting migratory species, Pinellas County beaches are home to several year-round resident species that breed during Summer. Pinellas County is the most densely populated county in Florida, and its Gulf Coast is heavily developed with commercial and …

Male Competition Reverses Female Preference For Male Chemical Cues, Z. Vilella-Pacheco, L. D. Mitchem, Vincent A. Formica, E. D. Brodie Iii

Biology Faculty Works

Females must choose among potential mates with different phenotypes in a variety of social contexts. Many male traits are inherent and unchanging, but others are labile to social context. Competition, for example, can cause physiological changes that reflect recent wins and losses that fluctuate throughout time. We may expect females to respond differently to males depending on the outcome of their most recent fight. In Bolitotherus cornutus (forked fungus beetles), males compete for access to females, but copulation requires female cooperation. In this study, we use behavioral trials to determine whether females use chemical cues to differentiate between males and …

Effects Of Varying Heat Indexes On Habitat Utilization And Behavior On Captive Red-Ruffed Lemurs (Varecia Rubra), Jeffrey Gammon

The Pegasus Review: UCF Undergraduate Research Journal

The two captive red-ruffed lemurs (Varecia rubra) at the Central Florida Zoo experienced a more temperate climate and utilized a differing habitat than they would in their native range, Madagascar. Proper management of the species in captivity is crucial for its long-term survival as they are critically endangered. Over a four month period, heat index temperature, lemur behavior, and habitat utilization data were collected via an instantaneous scan sample. Variables were analyzed to characterize how variations in heat index alter habitat utilization and behavior of the captive lemurs. As the heat index increased, habitat use became more restricted …

Using Acoustic Telemetry To Analyze The Impacts Of Common Carp On Wild Rice Restoration, Franklin Zomer

All NMU Master's Theses

Wild rice (Zizania palustris) is an important cultural, spiritual, and dietary resource to Lake Superior Ojibwe. Common Carp (Cyprinus carpio) are an introduced species that negatively impact aquatic vegetation through changes in water quality, uprooting of plants, and consumption of seed. Acoustic telemetry was used to document Common Carp movements in Waishkey Bay in the upper St. Marys River, MI where wild rice habitat is present. Exclosures were established to measure the influence of carp presence on wild rice seeding success. Common Carp were observed to spend much of their time in Waishkey Bay but also …

Migration Phenology And Patterns Of American Woodcock In Central North America Derived Using Satellite Telemetry, Joseph D. Moore, David E. Andersen, Tom Cooper, Jeffrey P. Duguay, Shaun L. Oldenburger, C. Al Stewart, David G. Krementz

Biological Sciences Faculty Publications and Presentations

American woodcock Scolopax minor (hereafter woodcock) migration ecology is poorly understood, but has implications for population ecology and management, especially related to harvest. To describe woodcock migration patterns and phenology, we captured and equipped 73 woodcock with satellite tracking devices in the Central Management Region (analogous to the Mississippi Flyway) of North America and documented migration paths of 60 individual woodcock and 87 autumn or spring woodcock migrations during 2014-2016. Woodcock migration at the scale of the Central Management Region was more synchronous in spring than in autumn, but unlike most other migratory birds, average duration of autumn migration (31 …

The Influence Of Juvenile Dinosaurs On Community Structure And Diversity, Katlin Schroeder, S. Kathleen Lyons, Felisa A. Smith

School of Biological Sciences: Faculty Publications

Despite dominating biodiversity in the Mesozoic, dinosaurs were not speciose. Oviparity constrained even gigantic dinosaurs to less than 15 kg at birth; growth through multiple morphologies led to the consumption of different resources at each stage. Such disparity between neonates and adults could have influenced the structure and diversity of dinosaur communities. Here, we quantified this effect for 43 communities across 136 million years and seven continents. We found that megatheropods (more than 1000 kg) such as tyrannosaurs had specific effects on dinosaur community structure. Although herbivores spanned the body size range, communities with megatheropods lacked carnivores weighing 100 to …

Behavioral Analysis Of The Cryptoprocta Ferox In An Ex-Situ Condition, Emilie Alfonso

The Pegasus Review: UCF Undergraduate Research Journal

Fossas (Cryptoprocta ferox) are the top, endemic predators of Madagascar. Their populations are dwindling and are reported as “Vulnerable” by IUCN. In an effort to combat this, zoological facilities have placed the species on a captive breeding program. This study focuses on concerns one of those zoos had about their captive C. ferox. The purpose of this study was to collect activity budgets on the C. ferox to determine if there is a change in behavior due to construction occurring around the C. ferox’s habitat, analyze behavior changes during estrus, determine any behavior changes, as well …

Observational Study Of Two Ex Situ North American River Otters (Lontra Canadensis), Julia Rifenberg

The Pegasus Review: UCF Undergraduate Research Journal

Zoos enable the ability to study how captive conditions impact the behaviors of animals. In this study, I observed two North American river otters housed at the Central Florida Zoo to evaluate behavioral changes after the male had been removed from the female for a month-long medical examination. The aim of this study was to 1) determine if mating behaviors were still occurring between the two river otters following the male’s removal and 2) to assess the welfare of the male and female river otters in captivity by observing their interactions and individual behaviors. Observed behaviors were compared to documented …

Geometric Morphometric Comparison Of Abu Mullet, Planiliza Abu (Heckel, 1843) Populations In Bushehr Basin, Iran: Fatemeh Shabaninejad, Yazdan Keivany, Dara Bagheri, Fatemeh Shabaninejad, Yazdan Keivany, Dara Bagheri

Tanzania Journal of Science

Many fish behavior and habitats could be defined based on the fish morphology, thus, using the fish body shape, in addition  to its genetic characteristics, could be used to infer the type of fish habitat and its characteristics. This study aimed to compare the body shapes of five populations of abu mullet, Planiliza abu (Heckel, 1843), in Bushehr basin using geometric morphometric method. Some 162 specimens from Hendijan, Genaveh, Helleh, Kaki and Mond rivers were used. Three morphometric characters, total length (TL), fork length (FL) and standard length (SL) were measured. Samples were photographed from the left side, then 18 …

Microbiome Analyses Demonstrate Specific Communities Within Five Shark Species, Rachael Storo, Cole Easson, Mahmood S. Shivji, Jose V. Lopez

Biology Faculty Articles

Profiles of symbiotic microbial communities (“microbiomes”) can provide insight into the natural history and ecology of their hosts. Using high throughput DNA sequencing of the 16S rRNA V4 region, microbiomes of five shark species in South Florida (nurse, lemon, sandbar, Caribbean reef, and tiger) have been characterized for the first time. The microbiomes show species specific microbiome composition, distinct from surrounding seawater. Shark anatomical location (gills, teeth, skin, cloaca) affected the diversity of microbiomes. An in-depth analysis of teeth communities revealed species specific microbial communities. For example, the genus Haemophilus, explained 7.0% of the differences of the teeth microbiomes …

Data From: Recovery From Discrete Wound Severities In Side-Blotched Lizards (Uta Stansburiana): Implications For Energy Budget, Locomotor Performance, And Oxidative Stress, Susannah S. French, Spencer B. Hudson

Browse all Datasets

Wounding events (predation attempts, competitive combat) result in injuries and/or infections that induce integrated immune responses for the recovery process. Despite the survival benefits of immunity in this context, the costs incurred may require investment to be diverted from traits contributing to immediate and/or future survival, such as locomotor performance and oxidative status. Yet, whether trait constraints manifest likely depends on wound severity and the implications for energy budget. For this study, food intake, body mass, sprint speed, and oxidative indices (reactive oxygen metabolites, antioxidant capacity) were monitored in male side-blotched lizards (Uta stansburiana) healing from cutaneous wounds of discrete …

Molecular Characterization Of A Marine Turtle Tumor Epizootic, Profiling External, Internal And Postsurgical Regrowth Tumors, Kelsey Yetsko, Jessica A. Farrell, Nicholas B. Blackburn, Liam Whitmore, Maximilian R. Stammnitz, Jenny Whilde, Catherine B. Eastman, Devon Rollinson Ramia, Ana C. Leandro

School of Medicine Publications

Sea turtle populations are under threat from an epizootic tumor disease (animal epidemic) known as fibropapillomatosis. Fibropapillomatosis continues to spread geographically, with prevalence of the disease also growing at many longer-affected sites globally. However, we do not yet understand the precise environmental, mutational and viral events driving fibropapillomatosis tumor formation and progression.

Here we perform transcriptomic and immunohistochemical profiling of five fibropapillomatosis tumor types: external new, established and postsurgical regrowth tumors, and internal lung and kidney tumors. We reveal that internal tumors are molecularly distinct from the more common external tumors. However, they have a small number of conserved potentially …

Mangrove Gastropods As Biomonitors For Heavy Metal Contamination, Farhathul Manas

Student Works (2020-2029)

A process called biomonitoring can be used to analyze the factors that affect the ecosystem. In this study, gastropods and sediments were used to observeits impact on the study sites under the Klang Islands Mangrove Forest Reserve (KIMFR): Pulau Klang (Klang Island), Pulau Carey (Carey Island) and Telok Gong representing the natural mangrove, agricultural and industrial environments, respectively. Environmental monitoring was performed using gastropods and sediments that were collected and tested for heavy metals including arsenic (As), lead (Pb), cadmium (Cd), and mercury (Hg). The inductive coupled plasma mass spectrometry (ICP-MS) was used for heavy metal testing in gastropods whereas …

Mussel Musings On The Powell River, Aggy Vanderpool

Cumberland Mountain Naturalist

No abstract provided.

A Record Of Vapour Pressure Deficit Preserved In Wood And Soil Across Biomes, Adrian Broz, Gregory J. Retallack, Toby M. Maxwell, Lucas C.R. Silva

Biology Faculty Publications and Presentations

The drying power of air, or vapour pressure deficit (VPD), is an important measurement of potential plant stress and productivity. Estimates of VPD values of the past are integral for understanding the link between rising modern atmospheric carbon dioxide (pCO₂) and global water balance. A geological record of VPD is needed for paleoclimate studies of past greenhouse spikes which attempt to constrain future climate, but at present there are few quantitative atmospheric moisture proxies that can be applied to fossil material. Here we show that VPD leaves a permanent record in the slope (S) of least-squares …

Environment–Host–Microbial Interactions Shape The Sarraceniapurpurea Microbiome At The Continental Scale, Zachary B. Freedman, Alicia Mcgrew, Benjamin Baiser, Mathilde Besson, Dominique Gravel, Timothée Poisot, Sydne Record, Lauren B. Trotta, Nicholas J. Gotelli

Biology Faculty Research and Scholarship

The importance of climate, habitat structure, and higher trophic levels on microbial diversity is only beginning to be understood. Here, we examined the influence of climate variables, plant morphology, and the abundance of aquatic invertebrates on the microbial biodiversity of the northern pitcher plant Sarracenia purpurea. The plant's cup‐shaped leaves fill with rainwater and support a miniature, yet full‐fledged, ecosystem with a diverse microbiome that decomposes captured prey and a small network of shredding and filter‐feeding aquatic invertebrates that feed on microbes. We characterized pitcher microbiomes of 108 plants sampled at 36 sites from Florida to Quebec. Structural equation …

The Effects Of Roadways On The Spatial And Temporal Movement Patterns Of Timber Rattlesnakes (Crotalus Horridus), Anna F. Tipton, Dominic L. Desantis

Graduate Research Showcase

Roadways are among the most widespread and disruptive anthropogenic land use features that influence the behavior and movement of wildlife. Negative impacts include vehicle-induced mortality, habitat destruction and fragmentation, and creating barriers to movement which can have far-reaching sub-lethal effects. In an effort to improve upon historical methods of evaluating the influence of prominent landscape features, such as roads, on the movement of small and secretive wildlife, we are using a novel integration of emerging spatial analyses and tri-axial accelerometry in Timber Rattlesnakes (Crotalus horridus) from central Georgia. We used dynamic Brownian Bridge Movement Models to estimate motion …

Pleistocene Rodents From Southeast Georgia, Parker Rhinehart

Graduate Research Showcase

Late-Pleistocene fossil sites are uncommon in Georgia. However, Clark Quarry, a locality near Brunswick, Georgia, has yielded a large and diverse collection of vertebrate skeletal material dominated by cranial and post-cranial fossils of Columbian mammoths (Mammathus columbi) and giant bison (Bison latifrons). Screen washing of the fossiliferous sediment associated with the bones of the megafauna has produced a large number of microfossils. Here I describe fossil rodents from Clark Quarry. Cranial and post-cranial material of eight rodent taxa have been identified to date. Of these, five are found in the area today: Sigmodon hispidus, Peromyscus sp., …