Biology Commons^™

Allelopathic Effect Of Methanol And Water Extracts Of Camellia Sinensis L. On Seed Germination And Growth Of Triticum Aestivum L. And Zea Mays L., Ambreen Waris, Laila Waris, Muhammad Azim Khan, Anwar Ali Shad

Journal of Bioresource Management

This study describes the possible effects of tea residues on crop production. To investigate the negative effects of tea on two cereal crops, i.e. wheat and maize, laboratory experiments were conducted during May 2014 and repeated in June 2014 to study the effect of black tea extract on wheat and maize seeds’ germination and growth. The experiment was conducted in petri dishes and laid out in completely randomized designs, replicated thrice. The petri dishes were kept in a growth chamber, with the temperature set at 25°C. 50 g of each dried fresh and used black tea was separately soaked in …

Production And Characterization Of Xylanase From Aspergillus Niger Using Wheat Bran, Corn Cobs, And Sugar Cane Bagasse As Carbon Sources With Different Concentrations, Muhammad Suleman, Iftikhar Hussain Bukhari, Muhammad Ikram Aujla, Abu Ul Hassan Faiz

Journal of Bioresource Management

Xylanases are enzymes that degrade Xylan, a hemicellulose found in plant cell walls, into Xylose. They are a very important class of enzymes to be used in paper and pulp industry. Removal of lignin from paper and pulp by Chlorine and its compounds have caused a serious problem in the environment. Delignification of lignin by Xylanase is an alternative approach that is environmentally friendly. The present research was conducted to produce and characterize Xylanase from the fungus Aspergillus niger using agricultural wastes/byproducts like corn cobs, wheat bran and sugar cane bagasse with different concentrations. Submerged fermentation was carried out in …

Ochratoxicosis In Monograstric Animals - A Review, Nafeesa Qudsia Hanif

Journal of Bioresource Management

Ochratoxin A (OTA) is a mycotoxin produced by several fungi of the genera Aspergillus and Penicillium, principally P. verrucosum in temperate climate and A. ochraceous in warm regions. In poultry feed materials, mycotoxins are found most commonly in cereals and to a lesser degree, in meals. The presence of OTA in animal feed contributes significantly to health disorders and decreased production. In addition to aflatoxins, which is an ubiquitously distributed toxin, OTA is one of the reasons for economic losses in the poultry industry due to poor performance and immunosuppression. Moreover, OTA has also been noted for the carryover …

Anti-Enzymatic Potential Of Two Different Varieties Of Malus Domestica, (Malus Communis Desf, Ripe And Unripe Fruits) And Their Constituent’S Analysis By Gas Chromatography And Mass Spectrometry (Gc-Ms), Anum Siddique, Muhammad Suleman, Iftikhar Hussain Bukhari, Muhammad Haleem Khan, Muhammad Ikram Aujla, Abu Ul Hassan Faiz

Journal of Bioresource Management

The paper presentscomparative study of urease and alpha-amylase inhibitory activities in two varieties of Malus species, i.e. unripened apple and gold coloured ripe apple. It is very important to know the anti enzymatic potential of these two varieties because the enzyme inhibition can be therapeutic and cure illness caused by malfunctioning of some enzymes. Objectives of this study was to determine the presence of chemical constituents, their role and inhibition activities of urease and alpha-amylase in selected apple varieties. Gas Chromatograph-Mass Spectrometric (GC-MS) was used to identify their chemical constituents. Both varieties exhibited profound activities of urease and alpha-amylase that …

In Vitro Propagation Of Morchella Esculenta And Study Of Its Life Cycle, Nazish Kanwal, Kainaat William, Kishwar Sultana

Journal of Bioresource Management

Among the edible mushrooms, Morchella esculenta (Pers.) is a highly prized mushroom which consists of a short stalk and a conical, pitted, hollow pileus. It is commonly known as a morel or sponge mushroom, or gucchi, etc. It belongs to the class Ascomycetes, order Pezizales and family Morchellaceae. It is found throughout the world. In Pakistan, it is found in northern areas from Murree, Patriata, and Gilgit under pine vegetation. It is therapeutic in nature; therefore its medicinal and biochemical properties are under investigation throughout the world, especially in regard to treating the hazardous diseases such as cancer, tumors, …

Association Of Rs2476601 And Rs1544410 With Onset Of T1d In Youngsters Of Lahore, Pakistan, Andleeb Batool, Maryam Mukhtar, Iram Qayyum, Romessa Shakeel

Journal of Bioresource Management

The PTPN22 gene plays vital role in T1D onset by encoding Lymphoid-specific phosphatase (LYP) that lead to T-cell receptor-associated CsK kinase inactivation and preventing T-cell spontaneous activation by dephosphorylation. VDR gene encoded for VDR receptor is involved indirectly in prevention of T1D onset by promoting insulin production. The present study was conducted to determine the mutations on rs2476601 and rs1544410 polymorphic sites on the PTPN22 and VDR genes respectively. We genotyped 50 patients and 50 control subjects from Lahore by using sequencing and Polymerase Chain Reaction-Restriction Fragment Length Polymorphism (RFLP) techniques. It was observed that the allelic frequency of r …

Tick-, Mosquito-, And Rodent-Borne Parasite Sampling Designs For The National Ecological Observatory Network [Special Feature: Neon Design], Yuri P. Springer, David Hoekman, Pieter T.J. Johnson, Paul A. Duffy, Rebecca A. Hufft, David T. Barnett, Brian F. Allan, Brian R. Amman, Christopher M. Barker, Roberto Barrera, Charles B. Beard, Lorenza Beati, Mike Begon, Mark S. Blackmore, William E. Bradshaw, Dustin Brisson, Charles H. Calisher, James E. Childs, Maria A. Diuk-Wasser, Richard J. Douglass, Rebecca J. Eisen, Desmond H. Foley, Janet E. Foley, Holly D. Gaff, Scott Lyell Gardner, Howard S. Ginsberg, Gregory E. Glass, Sarah A. Hamer, Mary H. Hayden, Brian Hjelle, Christina M. Holzapfel, Steven A. Juliano, Laura D. Kramer, Amy J. Kuenzi, Shannon L. Ladeau, Todd P. Livdahl, James N. Mills, Chester G. Moore, Serge Morand, Roger S. Nasci, Nicholas H. Ogden, Richard S. Ostfeld, Robert R. Parmenter, Joseph Piesman, William K. Reisen, Harry M. Savage, Daniel E. Sonenshine, Andrea Swet, Michael J. Yabsley

Scott L. Gardner Publications

Parasites and pathogens are increasingly recognized as significant drivers of ecological and evolutionary change in natural ecosystems. Concurrently, transmission of infectious agents among human, livestock, and wildlife populations represents a growing threat to veterinary and human health. In light of these trends and the scarcity of long-term time series data on infection rates among vectors and reservoirs, the National Ecological Observatory Network (NEON) will collect measurements and samples of a suite of tick-, mosquito-, and rodent-borne parasites through a continental-scale surveillance program. Here, we describe the sampling designs for these efforts, highlighting sampling priorities, field and analytical methods, and the …

Influence Of Row Spacing And Frequency Of Cuttings On Spinach (Spinacia Oleracea) Production, Daud Ahmad Awan, Faheem Ahmad, Madeeha Imdad

Journal of Bioresource Management

To study the effect of row spacing and frequency of cuttings on spinach (Spinacia oleracea), an experiment was carried out at the Kitchen Gardening Training Center for Women at 61 JB Dharorh Faisalabad, Pakistan, during 2014. The experiment was laid out in Randomized Complete Block Design (RCBD) with factorial arrangements having three replications with a plot size of 3 m × 6 m. This experiment was comprised of two factors, i.e. row spacing (Broadcast, 30 cm apart rows and 45 cm apart rows) and cutting frequency (45 days after sowing and 30 after the first cutting). The result …

In Silico Mechanistic Study Of Abscisic Acid (Aba) Mediated Drought Tolerance In Crops, Bushra Shaheen, Tayyaba Shaheen, Shahid Ur Rehman, Mahmood Ur Rahman, Muhammad Nawaz, Muhammad Tahir Ul Qamar

Journal of Bioresource Management

Drought is one of the major environmental stresses that produces adverse effects on plants. Vast areas of agricultural land is susceptible to drought. Drought induced yield loss of crops has negative effects on the economy of a country. Among phytohormones, Abscisic Acid (ABA) induces abiotic stress tolerance in plants, and directs a complex regulatory network involving multiple transporters, up-regulation of ABA biosynthesis genes and various signalling pathways that enable plants to withstand low water availability. The current study was designed to understand ABA synthesis, its transport across the plant during stress and its mechanism to induce stomatal closure by using …

Design Science 5 | Steam Intelligence, Schedule, Edna W. Lawrence Nature Lab

Design Science Symposia

Schedule of events.

Consensus On Consensus: A Synthesis Of Consensus Estimates On Human-Caused Global Warming, John Cook, Naomi Oreskes, Peter T. Doran, William R L Anderegg, Bart Verheggen, Ed W. Maibach, J Stuart Carlton, Stephan Lewandowsky, Andrew G. Skuce, Sarah A. Green, Dana Nuccitelli, Peter Jacobs, Mark Richardson, Bärbel Winkler, Rob Painting, Ken Rice

Department of Chemistry Publications

The consensus that humans are causing recent global warming is shared by 90%–100% of publishing climate scientists according to six independent studies by co-authors of this paper. Those results are consistent with the 97% consensus reported by Cook et al(Environ. Res. Lett. 8 024024) based on 11 944 abstracts of research papers, of which 4014 took a position on the cause of recent global warming. A survey of authors of those papers (N = 2412 papers) also supported a 97% consensus. Tol (2016 Environ. Res. Lett.11 048001) comes to a different conclusion using …

Section Abstracts: Natural History And Biodiversity

Virginia Journal of Science

Abstracts of the Natural History and Biodiversity Section for the 94th Annual Virginia Academy of Science Meeting, May 18-20, 2016, at University of Mary Washington, Fredericksburg, VA.

Traversing Swanton Road, 22nd Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Incorporated within this botanical overview but technically not part of the watershed sensu strictu, are the adjacent environs, ranging from the coastal strand up through the Western Terrace to the ocean draining ridge tops... with the Arroyo de las Trancas/Last Chance Ridge defining the western/northwestern boundary and the Molino Creek divide, the southern demarcation. Paradoxically, the use/abuse that the watershed has sustained …

Conversations With Gunanurang, Lawrence Smith

Landscapes: the Journal of the International Centre for Landscape and Language

Gunanurang (the Ord River) nurtured some of the original Australians productively for millennia. In less than 150 years, their relationship with the river valley and surrounding land was almost destroyed by the effects of the east Kimberley cattle industry commenced in the 1880s. The biological and archaeological surveys before and during the filling of the Lake Argyle dam were a belated attempt to understand what was being lost in the way of ecosystems and aboriginal sites. This short essay encapsulates the impact of the pastoral industry in the Ord valley.

Comparative Population Genomics Of Latitudinal Variation In Drosophila Simulans And Drosophila Melanogaster, Heather E. Machado, Alan O. Bergland, Katherine R. O'Brien, Emily L. Behrman, Paul S. Schmidt, Dmitri A. Petrov

School of Biological Sciences: Faculty Publications

Examples of clinal variation in phenotypes and genotypes across latitudinal transects have served as important models for understanding how spatially varying selection and demographic forces shape variation within species. Here, we examine the selective and demographic contributions to latitudinal variation through the largest comparative genomic study to date of Drosophila simulans and Drosophila melanogaster, with genomic sequence data from 382 individual fruit flies, collected across a spatial transect of 19 degrees latitude and at multiple time points over 2 years. Consistent with phenotypic studies, we find less clinal variation in D. simulans than D. melanogaster, particularly for the autosomes. Moreover, …

High Genetic Diversity But Low Population Structure In The Frog Pseudopaludicola Falcipes (Hensel, 1867) (Amphibia, Anura) From The Pampas Of South America, José A. Langone, Arley Camargo, Rafael O. De Sá

Biology Faculty Publications

Relative to South America’s ecoregions, the temperate grasslands of the Pampas have been poorly studied from a phylogeographic perspective. Based on an intermediate biogeographic setting between subtropical forest (Atlantic Forest) and arid ecosystems (Chaco and Patagonia), Pampean species are expected to show unstable demographic histories due to the Quaternary climatic oscillations. Herein, we investigate the phylogenetic relatedness and phylogeographic history of Pseudopaludicola falcipes, a small and common frog that is widely distributed across the Pampean grasslands. First, we use molecular data to assess if P. falcipes represents a single or multiple, separately evolving cryptic lineages. Because P. falcipes is …

Gascoyne Demersal Scalefish Managed Fishery, Department Of Fisheries

Fisheries Occasional Publications

An operators’ guide to the management arrangements 1 September 2015 – 31 August 2016.

Studying Macroinvertebrate Diversity In An Urbanized Watershed Of Rock Island, Illinois., Brittany A. Poynor

Biology: Student Scholarship & Creative Works

Urban land-use covers millions of hectares in the United States. Rock Island is an urbanized city in Illinois, U.S.A. that currently has issues with their stormwater system due to being an urban area. For the past few years, the water quality of the streams in this watershed has been examined, but the biodiversity which can also contribute to water quality knowledge, has not been studied in depth.

The study proposed in this paper is based on the amount of biodiversity in the streams at ten sites in the Rock Island watershed and the water quality at those same sites. It …

Two New Species Of Geosesarma De Man, 1892 (Crustacea: Brachyura: Sesarmidae) From Palawan, The Philippines, Hendrik Freitag, Marivene Manuel-Santos, Peter K.L Ng

Biology Faculty Publications

Two new and relatively large species of semi-terrestrial sesarmid crabs of the genus Geosesarma De Man, 1892, are described from Palawan Island, Philippines. They are distinguishable from congeners by the characteristic structure of their carapace, chelipeds, ambulatory legs and male first gonopods. Aspects of their ecology are briefly discussed

Isolation And Characterization Of Microbial Community Associated With Diadumene Lineata, The Orange-Striped Sea Anemone, Tiffany Lin, Andrew Weir

Student and Faculty Research Days

The orange-striped sea anemone, Diadumene lineata, is a marine invertebrate that can be found in the Northern Hemisphere. Distribution of Diadumene lineata ranges from Japan to the Gulf of Argentina. This invasive anemone originated from the Pacific Coast of Asia and serves as a host for a diverse microbial community including a photosynthetic alga. The epiphytic bacteria adhere to the outer surface as well as to the gastrovascular cavity of the host. The microbial community associated with Diadumene lineata is relatively unknown. This study attempted to isolate and identify bacteria commonly associated with this invasive marine invertebrate. Diadumene lineata was …

The Influence Of Balanced And Imbalanced Resource Supply On Biodiversity–Functioning Relationship Across Ecosystems, Aleksandra M. Lewandowska, Antje Biermann, Elizabeth T. Borer, Miguel A. Cebrián-Piqueras, Steven A.J. Declerck, Luc De Meester, Ellen Van Donk, Lars Ganfeldt, Daniel S. Gruner, Nicole Hagenah, W. Stanley Harpole, Kevin P. Kirkman, Christopher A. Klausmeier, Michael Kleyer, Johannes M. H. Knops, Pieter Lemmens, Eric M. Lind, Elena Litchman, Jasmin Mantilla-Contreras, Koen Martens, Sandra Meier, Vanessa Minden, Joslin L. Moore, Harry Olde Venterink, Eric W. Seabloom, Ulrich Sommer, Maren Striebel, Anastasia Trenkamp, Juliane Trinogga, Jotaro Urabe, Wim Vyverman, Dedmer B. Van De Waal, Claire E. Widdicombe, Helmut Hillebrand

School of Biological Sciences: Faculty Publications

Numerous studies show that increasing species richness leads to higher ecosystem productivity. This effect is often attributed to more efficient portioning of multiple resources in communities with higher numbers of competing species, indicating the role of resource supply and stoichiometry for biodiversity–ecosystem functioning relationships. Here, we merged theory on ecological stoichiometry with a framework of biodiversity–ecosystem functioning to understand how resource use transfers into primary production. We applied a structural equation model to define patterns of diversity– productivity relationships with respect to available resources. Meta-analysis was used to summarize the findings across ecosystem types ranging from aquatic ecosystems to grasslands …

Seasonal Dimorphism In Gastropod Hatchling Size: What Can We Learn From Egg Mass Morphology And Deposition Site Conditions?, Lily A. Harrison

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Egg size is one of the most important features of marine invertebrate reproduction because it provides insight into developmental patterns, offspring size, and adult investment per offspring. Intraspecific variation in egg size and the resulting hatchling size may depend on many factors including environmental and maternal conditions and geographic location. Therefore, both the season in which eggs are laid and the spatial heterogeneity of deposition sites may influence egg size and hatchling size. Natica chemnitzii deposits egg masses on sandy beaches along the coast of the Bay of Panama. During the wet (non-upwelling) season hatchling size is unimodal. However, monthly …

Species Distribution Modeling Of North American Odonates, Rebecca Beilinson

Library Map Prize

Species distribution modeling, which uses species-environment relationships to predict species’ geographic ranges, is a powerful technique for biogeographical and ecological analysis as well as for conservation planning. However, it has typically been underutilized for invertebrates and for freshwater species, as modeling these groups can pose unique challenges. Here I present methods for modeling odonate distributions and demonstrate these methods for four North American species. I show that incorporating expert-derived range maps as spatial priors can significantly improve model performance as compared to MaxEnt models. I also introduce a new distance to freshwater layer as an environmental variable, and show that …

Using Linear Mixed Models To Analyze Native And Non-Native Species Abundances In Coastal Sage Scrub, Kaylee Anderson

Scripps Senior Theses

Coastal Sage Scrub (CSS) is a low scrubland plant community native to the coasts of California, housing many threatened and endangered species. Due to the invasion of non-native plants, many areas of CSS have type converted to annual grasslands and the fire frequency has accelerated; fire in turn, may facilitate further invasion, leading to a loss of biodiversity. While many studies document post-fire succession in these communities, pre-fire data are rarely available for comparison, especially data on seedling emergence. I analyzed post-fire recovery of a type-converted grassland community, comparing seedling emergence data for the first and third year after fire …

Taxonomic Review Of The Wingmite Genus Cameronieta (Acari: Spinturnicidae) On Neotropical Bats, With A New Species From Northeastern Brazil, Juliana C. Almeida, Donald D. Gettinger, Scott Lyell Gardner

Scott L. Gardner Publications

The ectoparasitic mite genus Cameronieta (Acari: Mesostigmata: Spinturnicidae) is endemic to the New World and associated exclusively with bats of the family Mormoopidae. The genus consists of 7 species, 4 broadly distributed through the Caribbean and mainland of North and South America, and 3 species limited to the Greater Antilles archipelago. We present a brief review of the taxonomic history, redefine the genus, and consider some questions that remain concerning the biology and systematics of the group. A new species, Cameronieta almaensis n. sp., is described from the wings of Pteronotus parnellii collected from the Serra das Almas Reserve, in …

Phylogeny And Biogeography Of Species Of Syphacia Seurat, 1916 (Nemata : Oxyurida : Oxyuridae) From The Australian Bioregion, Haylee J. Weaver, Scott Monks, Scott Gardner

Scott L. Gardner Publications

Pinworm nematodes of the genus Syphacia (Nemata : Oxyurida : Oxyuridae) have a global distribution, and infect the caecum of rodents. Within the Australian Bioregion, 17 species of Syphacia infect a range of rodent hosts. Pinworms are traditionally thought to have coevolutionary relationships with their hosts, but the evolution and dispersal of Australian rodents and their helminths remains unclear. This combination of factors allowed us to investigate the likely relationships of Australian Syphacia species based on phylogenetic analysis, overlaid with the ecology and relationships of host species. We conducted a phylogenetic analysis using morphological characters of the species of Syphacia …

The Small Mammals Of Southeastern Virginia As Revealed By Pitfall Trapping, Robert K. Rose

Biological Sciences Faculty Publications

Pitfall trapping is a poor method to catch small mammals but the only way to catch and study the Southeastern Shrew (Sorex longirostris), the primary mammal of interest in the field studies reported here. While learning much about its distribution and abundance, still more was learned about the other small mammals present in forests and fields of eastern Virginia. A total of 15 species was captured at 19 locations during the 1990-2013 period, including five shrews, two moles, and eight rodents, representing all but one of the common small mammals in eastern Virginia.

Are We Missing Important Areas In Pelagic Marine Conservation? Redefining Conservation Hotspots In The Ocean, Dana K. Briscoe, Sara M. Maxwell, Raphael Kudela, Larry B. Crowder

Biological Sciences Faculty Publications

The protection of biodiversity is one of the most important goals in terrestrial and marine conservation. Marine conservation approaches have traditionally followed the example of terrestrial initiatives. However, patterns, processes, habitats, and threats differ greatly between the 2 systems - and even within the marine environment. As a result, there is still a lack of congruence as to how to best identify and prioritize conservation approaches moving from the static terrestrial and nearshore realm into a more fluid, 3-dimensional pelagic realm. To address this problem, we investigate how the conservation science literature has been used to inform and guide management …

Isolation And Identification Of Bacterial Endosymbionts In The Brooding Brittle Star Amphipholis Squamata, Abbey Rose Tedford

Honors Theses and Capstones

Symbiotic associations with subcuticular bacteria (SCB) have been identified and studied in numerous echinoderms, including the SCB of the brooding brittle star, Amphipholis squamata. These SCB, however, have not been studied using current next generation sequencing technologies. Previous studies on the SCB of A. squamata placed these bacteria in the genus Vibrio (γ-Proteobacteria), but subsequent studies suggested that the SCB are primarily composed of α-Proteobacteria. The present study examines the taxonomic composition of SCB associated with A. squamata from the Northwest Atlantic. DNA was extracted using a CTAB protocol and 16S rRNA sequences were amplified …

2015 Final Report: Status Of The Arizona Toad (Anaxyrus Microscaphus) In New Mexico, Mason J. Ryan, Ian M. Latella, Jacek Tomasz Giermakowski, Howard L. Snell

Biology Faculty & Staff Publications

In 2013, we initiated a field study to assess the status of the Arizona Toad (Anaxyrus microscaphus) in New Mexico. Herein we provide the results of three years (2013-2015) of range-wide population monitoring, a review of threat assessments, and several contributions to the basic ecology of the Arizona Toad in New Mexico. This work highlights the sensitivity of the species to abiotic factors and emphasizes the nature of annual population fluctuations in a variable environment. We provide analyses of environmental factors that influence toad reproductive behaviors, employ occupancy and detection modeling at breeding sites, and provide analyses of tadpole habitat …