Biology Commons^™

Investigation Into The Mechanism Of Ion Transport In Rio Negro Characiformes, Vineza D. Reduta

Undergraduate Honors Theses

Four fish species within the Characiform Order [(Rosy tetras (Hyphessobrycon rosaceus), Serpae tetras (Hyphessobrycon eques), Emperor tetras (Nematobrycon palmeri) and Penguin tetras (Thayeria obliqua)] are native to the ion-poor, acidic waters of the Rio Negro. In this paper, we focus on Wood’s revised Na⁺/NH₄⁺ exchange model to gain better insight into the mechanisms of ion transport within the Characids. We exposed each species to two experimental treatments: (i) 1mM ammonia (high external ammonia [HEA]), to test coupling of Na⁺ uptake and ammonia excretion, and (ii) 100μM Acetazolamide …

Final Report: Status Of The Arizona Toad (Anaxyrus Microscaphus) In New Mexico, Mason J. Ryan, Jacek Tomasz Giermakowski, Ian M. Latella, Howard L. Snell

Biology Faculty & Staff Publications

This report covers the fourth consecutive year (2013-2016) of research on the population dynamics, ecology, and conservation status of the Arizona Toad (Anaxyrus microscaphus) in New Mexico. The year 2016 represented the rare opportunity to study the effects of El Niño, which typically brings above average precipitation to New Mexico, on the breeding behavior and ecology of the Arizona toad. We expected that the El Niño-driven above average precipitation during the winter of 2015 and spring of 2016 would result in increased detection of toads at breeding sites, especially those sites that were dry in 2013, 2014, and …

Mitigating The Conflict Between Pitfall-Trap Sampling And Conservation Of Terrestrial Subterranean Communities In Caves, Peter Kozel, Tanja Pipan, Nina Šajna, Slavko Polak, Tone Novak

International Journal of Speleology

Subterranean habitats are known for their rich endemic fauna and high vulnerability to disturbance. Many methods and techniques are used to sample the biodiversity of terrestrial invertebrate fauna in caves, among which pitfall trapping remains one of the most frequently used and effective ones. However, this method has turned out to be harmful to subterranean communities if applied inappropriately. Traditionally, pitfall traps have been placed in caves solely on the ground. Here we present an optimized technique of pitfall trapping to achieve a balance between sampling completeness and minimal disturbance of the fauna in the cave. Monthly we placed traps …

Marine Tardigrades From South Carolina, Usa, Paul J. Bartels, Lilvia J. Bradbury, Diane R. Nelson

Journal of the South Carolina Academy of Science

Until now, there have been only three studies of marine tardigrades from South Carolina, USA. The Fall 2015 invertebrate zoology class from Warren Wilson College collected four sediment samples from Huntington Beach State Park: shallow beach sand, deep beach sand, shallow salt marsh sediment, and deep salt marsh sediment. No tardigrades were found in the salt marsh, but two species were found in the beach samples. Batillipes pennaki Marcus, 1946 was found in shallow and deep beach sand, and three specimens of a potentially new species of Stygarctus Schulz, 1951 were found in the deep beach sand at groundwater level. …

Identification And Characterization Of Endophytic Fungi Associated With The Leaves Of Moringa Oleifera Lam, Vivian A. Panes, E.S Carbungco, N.B Pedroche, T.E De La Cruz

Biology Faculty Publications

Fungal endophytes live within host plants and are recently gaining interest as sources of biologically active secondary metabolites. In this research, fungal endophytes associated with leaves of Moringa oleifera Lam. were isolated, characterized and identified. Leaf samples from two moringa trees were collected from Barangay Pandan, which is an urban area and Barangay Sapang Bato considered as a rural area with the highest elevation of all the barangays of Angeles City. All leaf samples were rid of debris by rinsing with tap water. A flame-sterilized one-hole puncher was used to bore 54 explants from leaves collected from each tree of …

Variation In Density Dependent Seedling Survival Across Forests Of Different Successional Age And Hunting Protection Status, Nohemi Huanca-Nunez

School of Biological Sciences: Dissertations, Theses, and Student Research

Over 50% of the original extent of tropical forests has been cleared. Restoration of secondary forests is important for maintaining the ecosystem services that mature tropical forests provide. Density dependence (DD) is thought to be a major mechanism for shaping forest community structure and may cause reduced spatial aggregation among individuals of the same species, allowing for maintenance of diversity. While much research has focused on DD in mature tropical forests, few studies have examined how DD may influence community structure in secondary forests, many of which are also exposed to hunting. There are several important agents of negative and …

Hitching A Ride: First Record Of A Least Chipmunk (Tamias Minimus) In Eastern Nebraska, Keith Geluso, Michael L. Forsberg

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

On 10 October 2016, a Least Chipmunk (Tamias minimus) was discovered in a residential area of Lincoln, Lancaster County, Nebraska. The closest populations of Least Chipmunks reside > 640 km to the west in northwestern Nebraska and southeastern Wyoming. The most parsimonious explanation for this unusual observation is that the chipmunk was transported to the city by humans. A likely scenario is that the chipmunk hitched a ride to Lincoln in a motor vehicle on 2 October 2016, when one of us drove 1500 km in a single day from Jackson, Teton County, Wyoming, after residing in that area …

Iowa Transplant, Mark Myers

UNIversitas: Journal of Research, Scholarship, and Creative Activity

As a professor in the Biology Department at UNI, one of my primary jobs is to teach young Iowans about ecology and the conservation of biodiversity. When I first encounter students in my classes, many view “nature” or “biodiversity” as unfamiliar and distant, perhaps something to be visited or experienced on vacation. I aim to teach these students about the historic transformation of Iowa’s landscape, the ways in which human activities alter the state’s ecosystems, and what ecologists and conservation biologists are doing to promote the conservation and restoration of biodiversity in Iowa. But learning is a two-way street. A …

The Significant Surface-Water Connectivity Of “Geographically Isolated Wetlands", Aram J.K. Calhoun, David M. Mushet, Laurie C. Alexander, Edward S. Dekeyser, Laurie Fowler, Megan W. Lang, Mark C. Rains, Stephen C. Richter, Susan C. Walls

EKU Faculty and Staff Scholarship

We evaluated the current literature, coupled with our collective research expertise, on surface-water connectivity of wetlands considered to be “geographically isolated” (sensu Tiner Wetlands 23:494–516, 2003a) to critically assess the scientific foundation of grouping wetlands based on the singular condition of being surrounded by uplands. The most recent research on wetlands considered to be “geographically isolated” shows the difficulties in grouping an ecological resource that does not reliably indicate lack of surface water connectivity in order to meet legal, regulatory, or scientific needs. Additionally, the practice of identifying “geographically isolated wetlands” based on distance from a stream can …

Molecular And Morphological Data Reveal Three New Cryptic Species Of Chiasmocleis (Mehely 1904) (Anura, Microhylidae) Endemic To The Atlantic Forest, Brazil, Mauricio C. Forlani, João F. R. Tonini, Carlos A. G. Cruz, Hussam Zaher, Rafael O. De Sá

Biology Faculty Publications

Three new cryptic species of Chiasmocleis from the Atlantic Forest of Brazil are described. Two of these species occur in the northeastern states of Sergipe and Bahia, whereas the third species is found in the southeastern state of São Paulo. The new species can be distinguished from other congeneric species by the molecular data, as evidenced in the phylogeny, and by a combination of morphological characters including: size, foot webbing, dermal spines, and coloration patterns. Chiasmocleis species differ in osteological traits, therefore we also provide an osteological description of each new species and comparisons with data reported for other species …

Rapid Increase In Genetic Diversity In An Endemic Patagonian Tuco-Tuco Following A Recent Volcanic Eruption, Jeremy L. Hsu, Sharon Kam, Mauro N. Tammone, Eileen A. Lacey, Elizabeth A. Hadly

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Catastrophic natural events can have profound impacts on patterns of genetic diversity. Due to the typically unpredictable nature of such phenomena, however, few studies have been able to directly compare patterns of diversity before and after natural catastrophic events. Here, we examine the impacts of a recent volcanic eruption in southern Chile on genetic variation in the colonial tuco-tuco (Ctenomys sociabilis), a subterranean species of rodent endemic to the area most affected by the June 2011 eruption of the Puyehue-Cordón Caulle volcanic complex. To provide a comparative context for interpreting changes in genetic variation in this species, we …

Evaluating Trophic Rewilding As A Conservation Technique, Aaron Sieve

Biology: Student Scholarship & Creative Works

The focus for this paper is to define specifically trophic rewilding, determine its efficacy as a conservation technique, and explore ways to lessen one of its key limitations. Trophic rewilding is the conservation technique whereby an extirpated keystone species or ecosystem engineer is reintroduced into a degraded habitat to restore ecological function by triggering trophic cascades. The technique is evaluated through analysis of the concepts of trophic cascades and ecosystem engineers. Key limitations of trophic rewilding are that a lack of population control in reintroduced may cause issues, that many times not enough is known about trophic cascades to be …

Pseudoalteromonas Piratica Sp. Nov., A Budding, Prosthecate Bacterium From Diseased Montipora Capitata, And Emended Description Of The Genus Pseudoalteromonas, Silvia Beurmann, Blake Ushijima, Christina M. Svoboda, Patrick Videau, Ashley M. Smith, Stuart P. Donachie, Greta S. Aeby, Sean M. Callahan

Research & Publications

A Gram-stain-negative, motile, rod-shaped bacterium designated OCN003T was cultivated from mucus taken from a diseased colony of the coral Montipora capitata in Kāne‘ohe Bay, O‘ahu, Hawai‘i. Colonies of OCN003T were pale yellow, 1–3 mm in diameter, convex, smooth and entire. The strain was heterotrophic, strictly aerobic and strictly halophilic. Cells of OCN003T produced buds on peritrichous prosthecae. Growth occurred within the pH range of 5.5 to 10, and the temperature range of 14 to 39 °C. Major fatty acids were 16 : 1!7c, 16 : 0, 18 : 1!7c, 17 : 1!8c, 12 : 0 3-OH and 17 : 0. …

Variation In Arthropod Hydration Across Us Cities With Distinct Climate, Kevin E. Mccluney, Justin D. Burdine, Steven D. Frank

Biological Sciences Faculty Publications

Increasing evidence suggests that altered environmental conditions within cities (e.g. temperature) can have strong effects on the biology and ecology of animals. Moreover, multiple abiotic (e.g. soil moisture, distributions of water bodies) and biotic factors (e.g. plant and animal communities) may be more similar among cities in distinct climate regions as compared to outside cities. But the mechanisms behind these patterns are unclear. We suggest that animal physiological condition responds to urbanization and may become more similar with urbanization among cities. As a first attempt at assessing this possibility, we measured hydration (water content) of field-collected arthropods, across variation in …

Local Scale Comparisons Of Avian And Woody Vegetation Communities Within Four Arkansas State Parks, Bennett P. Grooms, Rachael E. Urbanek

Journal of the Arkansas Academy of Science

Measuring the spatial distribution of biotic communities can provide useful data to wildlife managers on how and why species assemblages differ across a landscape. During 18 May – 7 August 2015, we conducted avian point counts and collected vegetation data in nested subplots at 4 Arkansas state parks. We then used a series of one-way ANOVAs and Kruskal-Wallis tests to examine differences in species richness, Simpson’s evenness, Simpson’s diversity, and Bray-Curtis similarity across the 4 parks. Mount Magazine State Park had the lowest avian evenness (F_3,22 = 9.57 P = 0.003) and diversity (F_3,22 = 17.8 …

The Hidden History Of Humming Frogs, Rafael O. De Sá

Biology Faculty Publications

In the depths of Brazil’s Atlantic Forest, researchers are battling to identify species before they are lost for good. Dr Rafael O de Sá, Professor of Biology at the University of Richmond, Virginia, USA, specialises in a group known as the ‘narrow-mouthed frogs’ and has already found four species new to science.

Museum Collections: Natural History Training Bridges Time, Space, And Digital Platforms., Anna Monfils, Karen Powers, Christopher J. Marshall, James F. Smith, Chris Martine, L. Alan Prather

Faculty Journal Articles

Natural history collections offer a number of unique physical and virtual opportunities to create formal and informal progressive learning environments. Collections provide direct interaction with biodiversity as it changes through time and space. Collections-based experiences lead to an increased understanding and substantive interaction with the living world. Recent studies demonstrate how nature and outdoor experiences can improve learning. We discuss how collections, and the data associated with collections, are a critical component linking nature and scientific inquiry. Partnerships that develop around collections and collections-based science can foster innovative educational and research experiences that are enhanced by access to museum specimens. …

Influence Of Topography And Moisture And Nutrient Availability On Green Alder Function On The Low Arctic Tundra, Nt, Katherine Louise Black Ms., Jennifer Lynn Baltzer Dr.

Theses and Dissertations (Comprehensive)

The Arctic has warmed by at least 3^°C over the past 50 years and this rapid warming is expected to continue. Climate warming is driving the proliferation of shrubs across the tundra biome with implications for energy balance, climate, hydrology, nutrient cycling, and biodiversity. Changes in tundra plant water use attributable to shrub expansion are predicted to increase evapotranspirative water loss which may amplify local warming and reduce run-off. However, little is known about the extent to which shrubs will enhance evapotranspirative water loss in these systems. Direct measures of shrub water use are needed to accurately predict …

Literature Record Checklist Of True Bugs (Hemiptera) For Arkansas, U.S.A., As Of 2018., Stephen W. Chordas Iii

Journal of the Arkansas Academy of Science

No abstract provided.

A Comparison Of Benthic Macroinvertebrate Assemblages Between Perennial And Intermittent Headwater Streams Of The Mattole River In Northern California, Usa, Mason S. London

Cal Poly Humboldt theses and projects

Intermittent streams are common throughout the world and comprise 60% or more of total river lengths in the conterminous United States. Despite their prevalence, intermittent streams are understudied, particularly first-order headwater streams, which are vital for maintaining the function, health and biotic diversity of river networks. In June 2016, I sampled five intermittent and five perennial headwater streams in the Mattole River watershed in northwestern coastal California, USA, to compare benthic macroinvertebrate (BMI) assemblages between intermittent and perennial streams. BMI samples were collected using a 500µm mesh D-net at eight randomly located riffles along a 150-m reach, and then composited, …

Wetland Connectivity And Macroinvertebrate Diversity, Samantha M. Hodgson, Jacob Pollock, Dr. Anne E. Wiley

Williams Honors College, Honors Research Projects

Wetlands are important in filtering pollutants from aquatic ecosystems and also serve as habitats for a diverse array of organisms. However, wetland-river networks are often subject to human disturbances such as dyke construction. These decreases in connectivity have the potential to impede movement of organisms and nutrients between habitats.

This study examined how the food web structure and diversity of macroinvertebrate communities differ between wetland sites connected and disconnected to nearby rivers. According to macroinvertebrate surveys in wetlands connected to nearby rivers and dyked wetlands (not connected to nearby rivers), there is an increase in average species richness and diversity …

Nematodes Associated With Mammals In The Great American Biotic Interchange (Gabi), F. Agustin Jimenez, Juliana Notarnicola, Scott Lyell Gardner

Scott L. Gardner Publications

The Great American Biotic Interchange (GABI) is a large-scale zoogeographic event that illustrates the exchange and diversification of mammals between North and South America. This phenomenon was accelerated by the connection of both landmasses during the Pliocene. Support for this phenomenon includes the extant distribution of xenarthrans, didelphiomorph marsupials, hystricognath and cricetine rodents, sciurids and carnivores, as well as the distribution of fossils in the stratigraphic record and the coalescence of genotypes. Contrasting with the relatively well-documented role and history of mammals in GABI, the role of their parasites has been largely neglected. As a consequence, the reconstructions of the …

Biotic Interchange Has Structured Western Hemisphere Mammal Communities, Danielle Fraser, S. Kathleen Lyons

School of Biological Sciences: Faculty Publications

Aim.— Many hypotheses posit that species-rich tropical communities are dominated by speciesspecies interactions, apparent as competitive exclusion or character displacement, whereas species-poor temperate communities are dominated by species-environment interactions. Recent studies demonstrate a strong influence of macroevolutionary and biogeographic factors. We simultaneously test for the effects of species interactions, climate, and biotic interchange on Western Hemisphere mammal communities using a phylogenetic and functional diversity approach.

Location.— Western Hemisphere.

Time period.— Modern

Major taxa studied.— Mammalia

Methods.— Using Western Hemisphere mammal distributional and body mass data, we calculate body mass dispersion, phylogenetic diversity (Net Relatedness Index), and assemblage-averaged rates of co-occurrence …

A Method For Measuring The Attachment Strength Of The Cestode Hymenolepis Diminuta To The Rat Intestine, Wanchuan Xie, Gábor R. Rácz, Benjamin S. Terry, Scott Lyell Gardner

Scott L. Gardner Publications

A unique adaptation of many internal parasites of mammals is their ability to stay in the intestine for extended periods of time and resist the normal peristaltic movements and forces that push and expel material. To better understand parasite adhesion behavior and replicate their attachment method in medical devices, an experiment was designed and performed using the rat tapeworm, Hymenolepis diminuta. The experiment employed a tensile test machine and a digital scale and was designed to calculate the attachment strength of the scolex to the mucosa through the change of the value of the digital scale during the tensile …

Distribution And Habitat Use Of The Golden Crab Chaceon Fenneri Off Eastern Florida Based On In Situ Submersible And Rov Observations And Potential For Impacts To Deep Water Coral/Sponge Habitat, John K. Reed, Stephanie Farrington, Charles Messing, Andrew David

Gulf and Caribbean Research

This study documents the distribution and habitat preferences of the golden crab, a commercially fished species, in relation to deep-sea coral/sponge ecosystems (DSCEs) at 200-900 m depths off eastern Florida. A total of 386 h of videotapes from 94 submersible and remotely operated vehicle (ROV) dives from 1999 to 2009, covering a total distance of 376 km, were reviewed and characterized for habitat type and presence of crabs. The DSCEs surveyed included Lophelia coral mounds, Miami Terrace, Pourtalès Terrace, and Tortugas Valleys. Video transect data also included environmental surveys of proposed deep-water routes for Liquid Natural Gas (LNG) pipelines, LNG …

Diversity And Evolution Of Fruits In Cuscuta (Dodders; Convolvulaceae), Anna Ho

Theses and Dissertations (Comprehensive)

Cuscuta (dodder) is a genus of roughly 200 species of obligate stem parasites with sub-cosmopolitan distribution. The fruit, generally regarded as a capsule, has a thin pericarp containing one to four seeds and opening at the base (circumscissile dehiscence; DE), or remaining closed (indehiscent; IN). IN has evolved multiple times in Cuscuta from DE, and is most common in the North American clades of subgenus Grammica. In addition, some species produce fruits that open irregularly. Characteristics pertaining to the fruits of Cuscuta are important as their seeds contribute most to their distribution and prevalence across the globe, and their reduced …

An Analysis Of White-Tailed Deer, Odocoileus Virginianus, Killed In Deer Vehicle Accidents On Bulloch County, Ga Roadways, Mackenzie P. Payne 4003933

Honors College Theses

White-tailed deer, Odocoileus virginianus, are native to Georgia. With over 1.2 million individuals in the state, White-tailed deer have been implicated in a large number of motor vehicle collisions (ca. 1 million) each year. It is unknown, however, if deer are more likely to be killed: 1) if they are of particular ages (or classes), and 2) in areas with specific road characteristics. We addressed these two questions by collecting the remains of 20 White-tailed deer killed in deer vehicle collisions (“deer vehicle accidents” - DVAs) in Bulloch County, GA. When a deer was located, the road characteristics were …

Determining The Reproductive Patterns Of The Titan Acorn Barnacle (Megabalanus Coccopoma) In Its Introduced Range, Isabel L. Moran Ms.

Honors College Theses

Invasive species are a significant conservation concern given their contribution to native species decline. The barnacle, Megabalanus coccopoma, is a common invasive species in tropical and subtropical regions of both the Pacific and Atlantic oceans. Little is known about the life history and ecology of M. coccopoma, and data on reproductive biology could provide valuable insight into its propensity to establish introduced populations. Most species of barnacle (including M. coccopoma) are hermaphroditic, but self-fertilization is rare in species studied to date. A recent genetic study of introduced M. coccopoma populations in the southeastern US showed high levels of …

Application Of A Coupled Human Natural System Framework To Organize And Frame Challenges And Opportunities For Biodiversity Conservation On Private Lands, John E. Quinn, Jesse Wood

Biology Publications

Conservation science addresses the complementary goals of preventing future biodiversity loss while sustaining critical human foundations. In this paper we use two case studies focused on land management to discuss how private lands conservation can be more effective by considering how planning and decision making reflects a coupled human and natural system (CHANS). The first case study focuses on conservation easements in the temperate forests of eastern United States; the second focuses on conservation opportunities in Midwestern agroecosystems, in particular the value of agroforestry. For each case study we discuss the natural and human subsystems, how elements and interactions within …

Pseudopecoelus Mccauleyi N. Sp. And Podocotyle Sp. (Digenea: Opecoelidae) From The Deep Waters Off Oregon And British Columbia With An Updated Key To The Species Of Pseudopecoelus Von Wicklen, 1946 And Checklist Of Parasites From Lycodes Cortezianus (Perciformes: Zoarcidae), Charles K. Blend, Norman O. Dronen, Gábor R. Rácz, Scott Lyell Gardner

Scott L. Gardner Publications

Pseudopecoelus mccauleyi n. sp. (Opecoelidae: Opecoelinae) is described from the intestine of the bigfin eelpout, Lycodes cortezianus (Gilbert, 1890) (Perciformes: Zoarcidae), collected at 200–800 m depths in the northeastern Pacific Ocean off Oregon and Vancouver Island, British Columbia. The new species is distinguished by possessing a unique combination of the following diagnostic characters: vitelline fields that extend to the posterior margin of the ventral sucker; a slender, tubular and sinuous seminal vesicle that extends some distance into the hindbody; an unspecialized, protuberant ventral sucker; a genital pore at pharynx level; lobed to deeply multilobed testes; a lobed ovary; and an …