Biology Commons^™

A Practical Approach To Phylogenomics: The Phylogeny Of Ray-Finned Fish (Actinopterygii) As A Case Study, Chenhong Li, Guillermo Orti, Gong Zhang, Guoqing Lu

Biology Faculty Publications

Background: Molecular systematics occupies one of the central stages in biology in the genomic era, ushered in by unprecedented progress in DNA technology. The inference of organismal phylogeny is now based on many independent genetic loci, a widely accepted approach to assemble the tree of life. Surprisingly, this approach is hindered by lack of appropriate nuclear gene markers for many taxonomic groups especially at high taxonomic level, partially due to the lack of tools for efficiently developing new phylogenetic makers. We report here a genome-comparison strategy to identifying nuclear gene markers for phylogenetic inference and apply it to the …

Nest Reuse By Eastern Kingbirds: Adaptive Behavior Or Ecological Constraint?, Lucas J. Redmond, Michael T. Murphy, Amy C. Dolan

Biology Faculty Publications and Presentations

The reuse of old nests by open-cup nesting passerines is a seemingly rare but potentially adaptive behavior if, as a consequence, females begin to breed earlier, lay larger clutches, or fledge more young. We report an unusually high rate of nest reuse (~10% of 341 nests) for Eastern Kingbirds (Tyrannus tyrannus) breeding at Malheur National Wildlife Refuge, Oregon. We found no difference in availability of nesting habitat or food abundance in territories in which nests were and were not reused. We also found no support for the hypotheses that kingbirds benefited from nest reuse by breeding earlier, laying …

Outcomes Of The Wetline Review. The Minister For Fisheries Proposed Decision For The Future Management Of The West Coast And Gascoyne Commercial 'Wetline' Fisheries, Department Of Fisheries Western Australia.

Fisheries Management Papers

This document details my proposed decisions regarding the new management arrangements for the West Coast and Gascoyne commercial “wetline” fisheries. Before finalising my position on the new management arrangements for these fisheries I invite any final comments on the proposed arrangements set out in this document. Although specific issues have been identified, your views are sought on any or all of the matters in the document of significance to you and/or your group.

Karyotypes Of Eight Species Of Leptodactylus (Anura, Leptodactylidae) With A Description Of A New Karyotype For The Genus, Renata Cecília Amaro-Ghilardi, Gabriel Skuk, Rafael O. De Sá, Miguel Trefaut Rodrigues, Yatiyo Yonenaga-Yassuda

Biology Faculty Publications

Karyotypes of eight species of Leptodactylus (Anura, Leptodactylidae) with a description of a new karyotype for the genus. Eight species of the Neotropical genus Leptodactylus were karyologically studied: seven of them (L. gracilis, L. mystacinus, L. petersii, L. pustulatus, L. macrosternum, L. ocellatus, L. labyrinthicus) presented 2n=22 and L. silvanimbus showed a distinctive karyotype with 2n=24. Nucleolar organizer regions (Ag-NORs) were detected in two different pairs of chromosomes: pair 4 at the proximal region of the long arm of one individual of L. mystacinus from São Paulo state and of L. petersii; and …

Genetic Resolution Of The Enigmatic Lesser Antillean Distribution Of The Frog Leptodactylus Validus (Anura, Leptodactylidae), Keneth Yanek, W. R. Heyer, Rafael O. De Sá

Biology Faculty Publications

Leptodactylus validus has an unusual distribution, inhabiting Trinidad, Tobago, and the Lesser Antilles, but not the mainland of South America. This distribution is inconsistent with other distribution patterns observed for these islands. Although slight variation in adult morphology has been observed among the different island populations of L. validus, call data suggest the presence of a single species. Calls of L. pallidirostris from Venezuela and Brazil suggested that this taxon might be conspecific with L. validus. Sequence data from the 12S and 16S mt rDNA genes indicate that L. validus represents a single species throughout its distribution and is conspecific …

A Scoping Paper : Matters Relevant To The Development Of A Sustainable Allocation And Growout Modul For Western Lobster Pueruli, Department Of Fisheries Western Australia

Fisheries Management Papers

This Scoping Paper has been prepared as a first step in the development of a management framework for a commercial western rock lobster puerulus growout aquaculture industry in Western Australia. The purpose of this Scoping Paper is to identify and scope the issues associated with the development of such an industry and to identify matters which should be considered in the development of a management framework.

Year-Round Diet Of The Marsh Rice Rat, Oryzomys Palustris, In Virginia Tidal Marshes, Robert K. Rose, Shannon W. Mcgurk

Virginia Journal of Science

The marsh rice rat, Oryzomys palustris, is the dominant semi-aquatic rodent living in tidal marshes of the Virginia coastal plain. Described as highly carnivorous, this species is known to consume a range of animal foods, including crustaceans, mollusks, fish, and arthropods, as well as some plant foods. Analysis of stomach contents from rice rats collected from Eastern Shore tidal marshes throughout an annual cycle revealed that all 103 stomachs contained dicots, 82 percent had monocots, 61 percent had crabs and insects, and 38 percent had snails. Thirty-eight percent of stomachs contained foods in all five categories, no stomach was …

Reflections On Wallace, Charles H. Smith

DLPS Faculty Publications

An unpublished paper has recently come to light, which shows that even at an early age, Alfred Russel Wallace was bold enough to approach the scientific establishment with his ideas.

Rana Ocellata Linnaeus, 1758 (Currently Leptodactylus Ocellatus; Amphibia, Anura): Proposed Conservation Of Usage Of The Specific Name By The Designation Of A Neotype, W. Ronald Heyer, Ulisses Caramaschi, Rafael O. De Sá

Biology Faculty Publications

The purpose of this application, under Article 75.6 of the Code, is to conserve the usage of the specific name of Rana ocellata Linnaeus, 1758 for a species of leptodactylid frog from South America by the designation of a neotype. Prevailing usage of the name is threatened by the identity of the type specimen which is a different species than that which is currently known as Leptodactylus ocellatus. It is proposed that all name-bearing types be set aside and a neotype designated in accord with prevailing usage.

Integrated Fisheries Management Draft Allocation Report Roe's Abalone Perth Metropolitan Region., Integrated Fisheries Allocation Advisory Committee

Fisheries Management Papers

The IFAAC has prepared this report, which documents the committee’s initial position on allocations for the abalone resource, along with the reasons for its conclusions as a basis for widespread community consultation. This report follows the IFAAC’s preliminary investigation of the abalone resourcesharing issues and consultation with stakeholders

Characterization Of Membrane Potentials In Vascular Smooth Muscle Of Hagfish, Lamprey And Trout, Prentiss Jones Jr.

Dissertations

The objective of this study was to characterize membrane potentials in systemic arteries of Pacific hagfish, Eptatretus stouti, Rainbow trout, Onchorhyncus mykiss, and Sea lamprey Petromyzon marinus. Previous studies have characterized membrane potentials in piscine tissue. However, these studies utilized non-vascular tissues such as cardiac muscle and skeletal muscle (69, 161). Characterization of membrane potentials in fish vasculature is without precedent in the literature. The hypothesis of this study was that membrane potentials in fish vascular smooth muscle differ little between species when comparable vasculature is evaluated.

The Effect Of Male Competition On Female Choice In Brandt’S Vole, Lasiopodomys Brandti, Jianjun Zhang, Dazhao Shi, Lixing Sun

All Faculty Scholarship for the College of the Sciences

The effect of male competition on female choice in the Brandt’s vole (Lasiopodomys brandti) was studied in the laboratory. Using a two-way choice test, we showed that when males did not compete, estrous females preferred and mated with the dominant males, but non-estrous females preferred subordinate males. However, when males competed, all dominant males gained the priority to mate, and the amicable behaviour between males, regardless of their dominant status, and between non-estrous females increased, compared with the behaviour between males and the estrous females. These results showed that interactions among Brandt’s voles were not only influenced by …

An Experimental Approach To Modeling The Strength Of Canine Teeth, Patricia W. Freeman, Cliff A. Lemen

School of Natural Resources: Faculty Publications

The strength of canine teeth in several carnivores is found through direct fracture experiments. The average forces required to break the canines of adult animals are coyote 1170 N, red fox 533 N, bobcat 737 N and raccoon 512 N. Stresses created in teeth at the breaking load are predicted by finite-element analysis and beam theory. The ultimate tensile stress sustainable in these teeth is 338 MPa in adult animals. The large pulp cavity in the canines of young animals significantly weakens the bases of their teeth (by about 25%), but as the animal ages the pulp cavity decreases and …

The Effects Of Nitrate Levels On The Response Of Pimephales Promelas To Conspecific Chemical Alarm Cues, Lucas J. Borgstrom

Honors Capstones

Capstone submitted as a graduation requirement for the BSU Honors Program.

Rapid Assimilation Of Yolk Enhances Growth And Development Of Lizard Embryos From A Cold Environment, Melissa Ann Blake

All-Inclusive List of Electronic Theses and Dissertations

Selection for rapid growth in cold environments results in a geographic pattern known as countergradient variation. The eastern fence lizard, Sceloporus undulatus, exhibits countergradient variation in growth rate across latitudinal clines. In a common-garden experiment, S. undulatus embryos from cold environments grew more efficiently than embryos warm environments, even when the energetic contents of eggs were equalized. To examine the physiological mechanisms of higher growth efficiency, I measured the energetics of embryos during the first 49 days of incubation. Specifically, I recorded body mass, residual yolk, total respiration, and developmental stage for embyos from two populations (Virginia and South Carolina). …

Dolomedes Scriptus (Water Spider): Male Response To Females’ Putative Pheromones On Perches., Katherine Hunt

Undergraduate Theses and Capstone Projects

Sexual signals are commonly used among animals to enhance reproductive success. Chemical signals such as pheromones are commonly used to attract mates. Little is known, though, about how these signals are received or interpreted by the target. I studied the water spider, Dolomedes scriptus in the pisaurid family. Most Dolomedes species only make webs as a nursery for their young. However, females often create silk drag lines, potentially serving for species recognition. In some Dolomedes species, females who are previously mated are known to cannibalize most approaching males. Males might avoid cannibalism by avoiding mated females, particularly if they can …

Comparative Genomic Analyses And Expression Of A Set Of Overlapping Open Reading Frames Of Frog Virus 3, Type Species Of Ranavirus (Family Iridoviridae), Wendy Guat Hoon Tan

Dissertations

Frog virus 3 (FV3) is the type species member of the genus Ranavirus (family Iridoviridae ). To better understand the molecular mechanisms involved in the replication of FV3, including transcription of its highly methylated DNA genome, the complete nucleotide sequence of the FV3 genome has been determined. The FV3 genome is 105, 903 base pairs long excluding the terminal redundancy. The G+C content of FV3 genome is 55% and it encodes 98 non-overlappingpotential open reading frames (ORFs) containing 50 to 1293 amino acids. Eighty-four ORFs have significant homology to known proteins of other iridoviruses, whereas 14 are unique FV3 ORFs. …

The Distress Calls Of Leptodactylus Chaquensis Cei, 1950 And Leptodactylus Elenae Heyer, 1978 (Anura: Leptodactylidae), José M. Padial, Rafael O. De Sá, Ignacio De La Riva

Biology Faculty Publications

We describe the distress calls of Leptodactylus chaquensis and Leptodactylus elenae. They each consist of a single, long, tonal sound with complex harmonic structure and complex frequency modulation. The distress calls of both species are different from their respective advertisement calls. Moreover, there are also clear interspecific differences. Harmonic frequencies in L. elenae are higher, there are fewer emphasized harmonics and the call is shorter and repeated at a higher rate (sometimes paired) than the call of L. chaquensis. Call duration, call rate, and position of the dominant harmonic change with the strength of the stimulus that the …

The Mayfly Newsletter, Peter M. Grant

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

Effects Of Prescribed Burning On Breeding Bird Populations Of The Daniel Boone National Forest Pioneer Weapons Area, Jimmy Mains

Morehead State Theses and Dissertations

A thesis presented to the faculty of the College of Science and Technology at Morehead State University in partial fulfillment of the requirements for the Degree of Master of Science by Jimmy Mains on January 3, 2006.

Terpenes And Carbohydrate Source Influence Rumen Fermentation, Digestibility, Intake, And Preference In Sheep, J. J. Villalba, F. D. Provenza, K. C. Olson

Green Canyon Environmental Research Area, Logan Utah

We hypothesized that toxins and nutrients in foods interact to influence foraging behavior by herbivores. Based on this hypothesis we predicted that 1) terpenes in big sagebrush (Artemisia tridentata) influence intake and preference in sheep for diets varying in sources of nonstructural (barley grain) and structural (sugar beet pulp) carbohydrates, and 2) these effects are due to the differential effects of terpenes on fermentation products and apparent digestibility of each class of carbohydrates. Lambs were fed 2 isoenergetic and isonitrogenous diets with varying proportions of the same ingredients (beet pulp- and barley grain-based diet) or offered a choice between the …

Eastern Bluebirds Eject Brown-Headed Cowbird Eggs, Brian Peer, Lyndon Hawkins, Edwin Steinke, Patricia Bollinger, Eric Bollinger

Faculty Research & Creative Activity

The relationship between the Brownheaded Cowbird (Molothrus ater) and its cavitynesting hosts has received little attention because of the assumption that cowbirds rarely parasitize these hosts. We tested the Eastern Bluebird (Sialia sialis), a host that is sometimes heavily parasitized by cowbirds, for egg ejection behavior. Bluebirds ejected 65% of experimentally added cowbird eggs (n = 20), but ejected no experimentally added conspecific eggs (n = 66). This suggests that cowbird parasitism, not conspecific brood parasitism, is the selective pressure responsible for egg ejection in this species. This level of rejection may be conservative because bluebirds nest in dark cavities, …

Eastern Bluebirds Eject Brown-Headed Cowbird Eggs, Brian D. Peer, Lyndon R. Hawkins, Edwin P. Steinke, Patricia Blair Bollinger, Eric K. Bollinger

Faculty Research & Creative Activity

The relationship between the Brownheaded Cowbird (Molothrus ater) and its cavitynesting hosts has received little attention because of the assumption that cowbirds rarely parasitize these hosts. We tested the Eastern Bluebird (Sialia sialis), a host that is sometimes heavily parasitized by cowbirds, for egg ejection behavior. Bluebirds ejected 65% of experimentally added cowbird eggs (n = 20), but ejected no experimentally added conspecific eggs (n = 66). This suggests that cowbird parasitism, not conspecific brood parasitism, is the selective pressure responsible for egg ejection in this species. This level of rejection may be conservative because bluebirds nest in dark cavities, …

Gis-Based Analysis Of Ice-Breeding Seal Strandings In The Gulf Of Maine, David Harris Ph.D., Sat Gupta

Faculty Publications

Phoca groenlandica (harp seals) and Cystophora cristata (hooded seals), two species of ice-breeding seals, are being sighted more frequently onshore in the Gulf of Maine since 1990, but little is known about their behavior in this ecosystem. We obtained records of 904 ice-breeding seal stranding locations in the Gulf of Maine between 1996 and 2002 from NOAA Fisheries and used a geographic information system (GIS) to conduct group-wise comparisons by species (using non-parametric techniques), and to determine the predictors of high seal-stranding density (using ordinal logistic regression analysis). Compared to harp seals, hooded seals stranded closer to deep water, farther …

Glucocorticoid Hormone Levels Increase With Group Size And Parasite Load In Cliff Swallows, Samrrah A. Raouf, Linda C. Smith, Mary Bomberger Brown, John C. Wingfield, Charles R. Brown

School of Biological Sciences: Faculty Publications

Animals often cope with adverse events by releasing glucocorticoid hormones, which in turn promote increased energy assimilation. In captive animals, crowding also leads to increased glucocorticoid activity, probably because of increased levels of social competition. We investigated how group size and ectoparasite infestations affected endogenous levels of the glucocorticoid hormone, corticosterone, in colonial cliff swallows, Petrochelidon pyrrhonota, in southwestern Nebraska, USA. Parasites were removed from some colonies by fumigating nests. Baseline levels of corticosterone in breeding adults varied significantly with whether parasites were present, colony size (measured by total number of active nests at a site), and nesting stage. …

Differential Habituation Of Male Betta Splendens To Qualitatively Different Stimuli, Lauren Baard

Undergraduate Research Symposium (UGRS)

Habituation is a learning mechanism that functions to decrease the amount of energy and attention focused on a certain stimuli. Male Siamese Fighting Fish, Betta splendens, are territorial animals that defend their territories using a number of aggressive displays. Male Bettas have previously shown the ability to habituate to the presence of a conspecific male when visually exposed to each other. Due to the costly nature of many of the male Betta’s displays, I hypothesized that male Bettas should differentially habituate to qualitatively different stimuli. I presented each of three groups of male Betta splendens with a different stimulus, each …

Leptodactylus Fragilis (Brocchi): White-Lipped Thin-Toed Frog, Miriam M. Heyer, W. Ronald Heyer, Rafael O. De Sá

Biology Faculty Publications

Adult Leptodactylus fragilis are small. The head is longer than wide, and the hind limbs are moderately long (Table 1; Heyer and Thompson 2000 provided definitions of adult size and leg length categories for Leptodactylus). Male vocal sacs are laterally expanded and range from lightly gray speckled to darkly pigmented. Male snout is spatulate; female snout is rounded. Male forearms are not hypertrophied and males lack asperities on the thumbs and chest. The dorsum is spotted or blotched with dark markings, which are often chevron-shaped and sometimes confluent. The supratympanic fold is dark brown. A pair of dorsolateral folds …

Proceedings Of The Western Australian Dhufish Workshop 2004, Mark Pagano, Terry Fuller

Fisheries Occasional Publications

The Western Australian Dhufish Workshop 2004 was a joint project between Recfishwest and the Western Australian Department of Fisheries.

The workshop incorporated presentations from the Department of Fisheries, Recfishwest, the Western Australian Fishing Industry Council, Murdoch University and Challenger TAFE to showcase current knowledge relating to the iconic dhufish in Western Australia. The perspectives of a recreational fisher, a commercial wetline operator and a metropolitan charter boat operator were also presented.

Through information sharing and discussion the workshop provided a platform to better understand the fundamental issues that underpin current and future management arrangements for this valuable resource. Both commercial …

Fisheries Occasional Publication No. 33 - Department Of Fisheries Community Survey 2005, Tara Baharthah

Fisheries Occasional Publications

A telephone survey of the Western Australian public was conducted to assess the level of success of programs implemented by the Department of Fisheries. The sample comprised of 700 interviews, 422 in the metropolitan area and 278 in regional areas throughout the State.

This community survey was used to determine the level of recall and awareness of the Department of Fisheries, the understanding and support of the community for the Department of Fisheries' management strategies and to examine key aspects of community participation in recreational fishing.

It is estimated that the overall participation rate for recreational fishing in Western Australia …

Physical And Health Assessment Of A Population Of Raccoon (Procyon Lotor) In Northeastern Florida, Eric C. Munscher

UNF Graduate Theses and Dissertations

The purpose of this research was to study the potential negative effects that mesopredators have on their environment and to promote control of mesopredator populations. Overabundant predatory species such as the raccoons (Procyon lotor) and Virginia opossums (Didelphis virginiana) can have significant pernicious effects on populations of autochthonous prey species, particularly when super predators such as the red wolf (Canis rufus) and Florida panther (Felis concolor coryii) are absent. These overabundant species, coined as mesopredators, are often responsible for extreme levels of predation on prey species and/or their young. The mesopredator release hypothesis involves the "release" or increased density of …