Biology Commons^™

The Rise And Fall Of Kin Structure In The Neotropical, Family-Living Buff-Breasted Wren (Cantorchilus Leucotis) In Gamboa, Panama, Sarah C. Alessi

Masters Theses

Family-living species provide an exciting model to examine how natal dispersal and kin structure influence genetic structuring within local populations. Juvenile buff-breasted wrens (Cantorchilus leucotis) of both sexes delay dispersal and exhibit short-distance natal dispersal, which should lead to kin-structured populations in which relatives of both sexes occupy neighboring territories. Blood samples collected from juvenile and adult wrens in Gamboa, Panama were analyzed using microsatellite markers to determine whether related individuals are spatially clustered on neighboring territories, spatial clusters of relatives change over time, and if kin structure is sex-specific. Global and local spatial autocorrelation analyses detected genetic …

Strike Mechanics Of An Ambush Predator: The Spearing Mantis Shrimp, M. Devries, E. Murphy, S. Patek

Faculty Publications, Biological Sciences

Ambush predation is characterized by an animal scanning the environment from a concealed position and then rapidly executing a surprise attack. Mantis shrimp (Stomatopoda) consist of both ambush predators (‘spearers’) and foragers (‘smashers’). Spearers hide in sandy burrows and capture evasive prey, whereas smashers search for prey away from their burrows and typically hammer hard-shelled, sedentary prey. Here, we examined the kinematics, morphology and field behavior of spearing mantis shrimp and compared them with previously studied smashers. Using two species with dramatically different adult sizes, we found that strikes produced by the diminutive species, Alachosquilla vicina, were faster (mean peak …

Cartilage On The Move: Cartilage Lineage Tracing During Tadpole Metamorphosis, Ryan R. Kerney, Alison L. Brittain, Brian K. Hall, Daniel R. Buchholz

Biology Faculty Publications

The reorganization of cranial cartilages during tadpole metamorphosis is a set of complex processes. The fates of larval cartilage-forming cells (chondrocytes) and sources of adult chondrocytes are largely unknown. Individual larval cranial cartilages may either degenerate or remodel, while many adult cartilages appear to form de novo during metamorphosis. Determining the extent to which adult chondrocytes/cartilages are derived from larval chondrocytes during metamorphosis requires new techniques in chondrocyte lineage tracing. We have developed two transgenic systems to label cartilage cells throughout the body with fluorescent proteins. One system strongly labels early tadpole cartilages only. The other system inducibly labels forming …

Spatial And Oceanographic Factors Affecting Black-Legged Kittiwake And Thick-Billed Murre Distributions In The Southeastern Bering Sea, Brian Hoover

Capstone Projects and Master's Theses

The distribution patterns of Thick-billed Murres (Uria lomvia) and Black-legged Kittiwakes (Rissa tridactyla) in the southeastern Bering Sea were documented at sea during vessel-based surveys in July-August of 2008 and 2009. The relationships of murre and kittiwake densities with environmental variables were investigated using binomial generalized additive models (GAMs) to model the presence or absence of birds, and Gamma-error distribution GAMs to model the positive densities of birds. Environmental variables included oceanographic factors (Chlorophyll, Chlorophyll anomalies, Daily SST, Monthly SST), spatial factors (Distance to nearest colony, Distance to 300m shelf break, Depth), and a temporal factor (Year). Nocturnal surveys were …

High Prevalence Of The Amphibian Chytrid Fungus (Batrachochytrium Dendrobatidis) Across Multiple Taxa And Localities In The Highlands Of Ethiopia, David J. Gower, Thomas M. Doherty-Bone, Roman K. Aberra, Abebe Mengistu, Silvia Schwaller, Michele Menegon, Rafael O. De Sá, Samy A. Saber, Andrew A. Cunningham, Simon P. Loader

Biology Faculty Publications

Surveys of the potentially lethal amphibian chytrid fungus (Batrachochytrium dendrobatidis - Bd) in Africa are patchy, especially in some regions of high species endemicity. We present results of the first Bd surveys of wild amphibians in Ethiopia, for two upland regions on either side of the Rift Valley: the Bale Mountains and the Kaffa region. Surveys were opportunistic so that robust interpretation of the data is limited. Utilizing diagnostic qPCR assays, 51 out of 120 frogs (14 species in 10 genera) tested positive for Bd at altitudes of 1,620–3,225 m, across all genera and species, and all but …

Euscorpius Sicanus (Scorpiones: Euscorpiidae) From Tunisia: Dna Barcoding Confirms Ancient Disjunctions Across The Mediterranean Sea, Matthew R. Graham, Pavel Stoev, Nesrine Akkari, Gergin Blagoev, Victor Fet

Biological Sciences Faculty Research

We used a DNA barcoding marker (mitochondrial cox1) to investigate the controversial natural occurrence of Euscorpius sicanus (C.L. Koch) in North Africa. We tested this hypothesis by comparing a sample collected from a mountain in Tunisia to disjunct populations in Sardinia, Malta, and Greece. Using these samples, and a few additional Euscorpius spp. from southern Europe as outgroups, we reconstructed the maternal phylogeny. We then used a molecular clock to place the phylogeny in a temporal context. The Tunisian sample grouped closest to a specimen from Sardinia, with both being more distantly related to E. sicanus from Malta, which is …

The Development Of Dermatonotus Muelleri (Anura: Microhylidae: Gastrophryninae), Marissa Fabrezi, Silvia Quinzio, Javier Goldberg, Rafael O. De Sá

Biology Faculty Publications

The monophyly of Microhylidae is supported by an overwhelming accumulation of synapomorphic larval features. Despite the distinctiveness of the microhylid tadpole, few studies have focused on larval development. Microhylid larval morphology is usually described and based on standard tables that imply that developmental events at equivalent stages of overall tadpole development are independent from species-specific patterns of developmental timing. Herein, we present additional developmental data based on external morphology and field data on larval growth for the gastrophrynine microhylid Dermatonotus muelleri. We describe internal morphological variation (e.g., skeletal and soft systems) during larval development. The results indicate that the onset …

Sub-Antarctic And High Antarctic Notothenioid Fishes: Ecology And Adaptational Biology Revealed By The Icefish 2004 Cruise Of Rvib Nathaniel B. Palmer, H. William Detrich Iii, Bradley A. Buckley, Daniel F. Doolittle, Christopher D. Jones, Susanne J. Lockhart

Biology Faculty Publications and Presentations

The goal of the ICEFISH 2004 cruise, which was conducted on board RVIB Nathaniel B. Palmer and traversed the transitional zones linking the South Atlantic to the Southern Ocean, was to compare the evolution, ecology, adaptational biology, community structure, and population dynamics of Antarctic notothenioid fishes relative to the cool/temperate notothenioids of the sub-Antarctic. To place this work in a comprehensive ecological context, cruise participants surveyed the benthos and geology of the biogeographic provinces and island shelves on either side of the Antarctic Polar Front (or Antarctic Convergence). Genome-enabled comparison of the responses of cold-living and temperate notothenioids to heat …

Birds In Residential Metropolitan New Orleans Neighborhoods And Their Relationships To The Batture And Yard Vegetation, Ruth A. Guymon

LSU New Orleans Theses and Dissertations

Metropolitan New Orleans Neighborhoods were surveyed in order to determine how bird populations responded to distance from the batture, percent canopy cover, stem counts, and understory vegetation. Surveys were conducted in the spring and summer of 2010. It was found that batture birds, urban birds, and pooled birds all had greater species richness and abundance in the spring in areas with more canopy cover, higher stem counts, more understory vegetation, and distances closer to the batture. In the summer, batture birds had greater richness and abundance in areas with more canopy cover, higher stem counts, and more understory cover. This …

Developing Monitoring Methods For Leptasterias Spp. As Sentinel Species In Detecting Local Environmental Changes, Zachary Sturbaum, Kathryn Nuessly, Riley J. Smith, C. Sarah Cohen

STAR Program Research Presentations

Leptasterias spp., a six-rayed sea star, is found in rocky intertidal habitats ranging from Alaska to central California. Leptasterias spp. can be monitored on a broad scale throughout their range by a variety of means using timed counts and random plot censusing in order to detect both large-scale and local-level changes in the environment due to climate change, land-based human activity, or other environmental events. Leptasterias brood their young externally until the embryos grow into fully developed juveniles. These juveniles disperse by crawling away, limiting their dispersal potential. This localized dispersal provides an opportunity to use Leptasterias spp …

Nutritional Content Of Rhinoceros Auklet (Cerorhinca Monocerata) Bill Loads, Dustin Taylor, Ron Heintz

STAR Program Research Presentations

Nutritional Content of Rhinoceros Auklet Bill Loads

Dustin E Taylor

Abstract

An adult Rhinoceros Auklet (Cerorhinca monocerata) can only catch and carry a limited amount of prey to their nestlings after a foraging trip. The auklets therefore must maximize their efficiency by bringing back the most proportionally nutritious prey items to their nestlings. The prey carried back to the nesting sites (known as a ‘bill load’) can contain whole fish, as well as parts, most commonly fish heads. This study is aimed to determine whether returning with just heads to the nestlings was proportionally more nutritious than bringing …

Effects Of Pristane On Growth Of Pink Salmon (Oncorhynchus Gorbuscha), Brielle D. Kemis, Bonita Nelson

STAR Program Research Presentations

Pristane is a naturally occurring hydrocarbon that is generated by copepods in marine ecosystems. Organisms that eat copepods do not readily metabolize pristane, which causes it to accumulate throughout the marine food web. Understanding how pristane affects marine fish is essential because pristane is often used as a bioindicator in lab studies and may be influencing results in those studies. Also, this hydrocarbon may significantly reduce growth of marine fish in the wild. A previous study indicated that pristane is an appetite suppressant and growth retardant in fish. However, the study implemented a feeding regime with unnaturally high levels of …

Responses To Predator Recognition Odors In Marmorkrebs, Loren Samantha Beard

Theses and Dissertations - UTB/UTPA

Marmorkrebs is a parthenogenetic crayfish with no indigenous populations. They have been introduced in several countries and could become an invasive species. Individuals introduced in Germany had longer, sharper spines, suggesting an adaptation to predators via developmental plasticity. This was tested by exposing juveniles to the odor of a fish during development and comparing them to controls. Subsequent spine length or sharpness did not differ. Other crayfish detect predators via an alarm cue, hemolymph, and exhibit avoidant behavior in response. I hypothesized that Marmorkrebs would also treat hemolymph as an alarm cue. The behavior of adult crayfish exposed to food, …

The Breeding Biology Of The Northern Pygmy Owl: Do The Smallest Of The Small Have An Advantage?, John F. Deshler, Michael T. Murphy

Biology Faculty Publications and Presentations

We explored the breeding biology of the Northern Pygmy-Owl (Glaucidium gnoma) from 2007 to 2009 in a forested reserve in Portland, Oregon. Large body size is often assumed to give animals reproductive advantages, and we tested whether body size affected timing of breeding and examined variation in diet, breeding date, clutch size, and reproductive success to explore whether the presumed benefits of large body size are evident in this species. The average size of 13 clutches was 5.8, and nest success was high (92%); 22 successful nests fledged an average of 5.2 young. Dates of first laying varied …

A Study Of The Eastern Oyster, Crassostrea Virginica, In Tampa Bay: Effects Of Perkinsus Marinus On Reproduction And Condition, Bridgit Melora Mccrickard

USF Tampa Graduate Theses and Dissertations

Abstract

Five sites in Tampa Bay, Florida, were sampled monthly from February 2006 to January 2007. These sites were located at the mouth of the Alafia River, in an inlet of Cross Bayou, on the easement of Gandy Bridge, near mangrove in Manatee County, and an inlet of Salt Creek, off Bayboro Harbor. Standard methods were used to determine shell height and Condition Index (CI). Intensity and prevalence of Perkinsus marinus were analyzed using Ray's Thioglycollate medium test, while Haplosporidium nelsoni was studied by histological examination. Histological methods were also used to determine sex ratios, reproductive phases, and egg diameters. …

Aquatic Heteroptera Of The Lake Manguao Catchment, Palawan And New Rank Of Rhagovelia Kawakamii Hoberlandti Hungerford & Matsuda 1961, Hendrik Freitag, Herbert Zettel

Biology Faculty Publications

Results of an inventory of the fauna of aquatic and semiaquatic true bugs (Insecta: Hemiptera) of small streams in a lake catchment of northern Palawan are presented. Twenty-one species were recorded. Taxonomic and ecological notes, distribution and collection sites are given for each identified taxon. Rhagovelia hoberlandti Hungerford & Matsuda 1961 is newly ranked as a subspecies of R. kawakamii (Matsumura 1913): Rhagovelia kawakamii hoberlandti Hungerford & Matsuda 1961, stat.n. Cercotmetus asiaticus Amyot & Serville 1843 is recorded for the first time from the Philippines. Endemic and few undescribed taxa are discussed. Additional environmental data of the sampled waters are …

Energy-Saving Hypothermia Reduces Flight Ability In Mourning Doves, Jennie M. Carr, Steven L. Lima

Symposium 2012

Overwintering birds are frequently exposed to thermal challenges that can quickly decrease energy reserves, thus leading to an increase in the risk of starvation. During these periods of energetic hardship, many avian species use nocturnal hypothermia to conserve energy that would otherwise be lost remaining warm throughout the night (McKechnie & Lovegrove 2002). However, a cool body temperature (Tb) may limit a bird’s ability to monitor the environment and may slow their response to a potential threat. Thus, birds likely trade-off between the benefits of energy-saving hypothermia and the potential costs of reduced behavioral responsiveness to predators (Welton et al. …

Genetic Variation In Potentially Virulent Vibrio Parahaemolyticus From The Northern Gulf Of Mexico, Nicholas Felix Noriea Iii

Dissertations

Vibrio parahaemolyticus (V_p) is a gram-negative bacterium found naturally in marine and estuarine environments. V_p is found in oysters including those which are later consumed by the public. Sub-populations of potentially virulent Vp contain specific virulence factors and are relevant human pathogens capable of causing gastroenteritis, wound infection, and death. The tdh and trh genes, both encoding hemolysins, have been correlated with the majority of clinical V_p isolates but have not been shown to be the definitive virulence factors.

A total of 146 V_p isolates from the northern Gulf of Mexico were collected and probed …

Comparison Of Creel Survey Data To Traditional Sampling Techniques In Pit-Lake Fisheries Of Muhlenberg County, Kentucky, Derek L. Rupert

Masters Theses & Specialist Projects

Populations of largemouth bass, Micropterus salmoides, and bluegill, Lepomis macrochirus, were evaluated from five pit-lakes in Muhlenberg County, Kentucky, to determine if accurate proportional stock density (PSD) data can be obtained from a mandatory creel survey. It was hypothesized that the proportion of stock-to-quality (300-400mm) and quality (+400mm) largemouth bass from four years (2007-2010) of creel survey data would be statistically similar to those generated through on-site sampling in 2011. Fish were collected via a combination of gill netting, seining, hook-and-line fishing, and boat-mounted electro-fishing. In two of the pit-lakes, the sampling-generated length frequency data was not significantly …

Host Specificity Of Ecuadorian Bat Flies (Diptera: Streblidae), Eric Stamper

Mahurin Honors College Capstone Experience/Thesis Projects

Diptera: Streblidae are ectoparasites of bat populations found in many locations throughout the world. These ectoparasites are generally known as bat flies. They attach themselves to the wing membranes and bodies of bats to bite and feed on their blood. Using a large sample consisting of over 2,000 bats and 6,000 bat flies, I have conducted a study of the degree of host specificity of these ectoparasites. Host specificity is a measurement of the degree to which a particular parasite is restricted to its host or hosts. Here I find evidence to support more recent findings that bat flies are …

Clam (Corbicula Fluminea) As A Potential Sentinel Of Human Norovirus Contamination In Freshwater, Xunyan Ye

Dissertations

The purpose of this study was to evaluate and validate the use of the clam Corbicula fluminea as a sentinel of human noroviruses (HuNoV) contamination in freshwater. The first specific aim was to develop a new method to extract HuNoV RNA from contaminated bivalves (e.g. oysters, clams) that would be much faster than existing methods. The procedure developed includes an initial total RNA extraction using TRI Reagent, followed by HuNoV RNA concentration and purification using biotinylated probe-capture technology. HuNoV RNA is finally detected by real-time RT-PCR. Using bivalve homogenates spiked with HuNoV, 100 PCR detection units of the virus was …

Initial Trends In The Kentucky Buck Test Program, Robert S. Kelly

Morehead State Theses and Dissertations

A thesis presented to the faculty of the College of Science and Technology at Morehead State University in partial fulfillment of the requirements for the Degree of Master of Science by Robert S. Kelly on April 20, 2012.

Ear Length As A Diagnostic Character For Identifying Species Of Kangaroo Rats, Daniel W. Ziebron

Biological Sciences

The following study examines the use of ear length as a diagnostic field character for differentiating between species of Kangaroo rats in San Luis Obispo County. Data was taken from a study of Kangaroo rats in the Guadalupe-Nipomo Dunes National Wildlife Refuge, as well as various collections under the supervision of Francis X. Villablanca, Ph. D. and California Polytechnic State University, San Luis Obispo. An ANOVA was used to compare subspecies within Dipodomys heermanni and t-tests were used to compare ear lengths between Dipodomys heermanni and Dipodomys venustus. The analysis shows a statistically significant difference and supports the hypothesis …

Potential For Barn Owl As Rodent Biological Control In Central California Vineyards, Hannah Tillmann

Biological Sciences

The pocket gopher (Thomomys bottae) and voles (Microtus spp.) cause significant economic damage to vineyards. In response, many growers have taken steps to attract Barn Owls (Tyto alba) to their properties to help keep these rodent populations in check. This research project investigated Barn Owl consumption of pocket gophers and voles in Central California vineyards in order to assess the efficiency of this integrated pest management strategy. I collected a total of 715 owl pellets from five vineyard locations in Templeton and Paso Robles, California over an eight-month period during nesting and post-fledging seasons. I …

The Mayfly Newsletter, Peter M. Grant

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

Research, Monitoring, Assessment And Development Plan 2011 – 2012, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

The Chicken Challenge – What Contemporary Studies Of Fowl Mean For Science And Ethics, Carolynn L. Smith, Jane Johnson

Between the Species

Studies with captive fowl have revealed that they possess greater cognitive capacities than previously thought. We now know that fowl have sophisticated cognitive and communicative skills, which had hitherto been associated only with certain primates. Several theories have been advanced to explain the evolution of such complex behavior. Central to these theories is the enlargement of the brain in species with greater mental capacities. Fowl present us with a conundrum, however, because they show the behaviors anticipated by the theories but do not have the expected changes in the brain. Consequently fowl present two challenges of interest to us here. …

Two New Species Of Trigonotylus (Hemiptera: Heteroptera: Miridae: Stenodemini) From Western Canada And Northwestern United States, G G.E. Scudder, Michael D. Schwartz

Green Canyon Environmental Research Area, Logan Utah

No abstract provided.

High Altitude Diving In River Otters: Coping With Combined Hypoxic Stresses, Jamie R. Crait, Henry D. Prange, Noah A. Marshall, Henry J. Harlow, Clark Cotton, Merav Ben-David

Biology Faculty Publications

River otters (Lontra canadensis) are highly active, semi-aquatic mammals indigenous to a range of elevations and represent an appropriate model for assessing the physiological responses to diving at altitude. In this study, we performed blood gas analyses and compared blood chemistry of river otters from a high-elevation (2357 m) population at Yellowstone Lake with a sea-level population along the Pacific coast. Comparisons of oxygen dissociation curves (ODC) revealed no significant difference in hemoglobin-oxygen (Hb-O₂) binding affinity between the two populations - potentially because of demands for tissue oxygenation. Instead, high-elevation otters had greater Hb concentrations (18.7 …

A Guide To Missouri's Freshwater Mussels, Stephen E. Mcmurray, J. Scott Faiman, Andy Roberts, Bryan Simmons, M. Christopher Barnhart

Faculty Books

No abstract provided.