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Articles 1 - 27 of 27
Full-Text Articles in Bioinformatics
From Formulas To Futures: Mathematical Insights Into Endosomal Escape, Fnu Nisha
From Formulas To Futures: Mathematical Insights Into Endosomal Escape, Fnu Nisha
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Model-Free Identification Of Relevant Variables From Response Data, Alan Veliz-Cuba, David Murrugarra
Model-Free Identification Of Relevant Variables From Response Data, Alan Veliz-Cuba, David Murrugarra
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Machine Learning-Based Risk Factor Analysis And Prevalence Prediction Of Intestinal Parasitic Infections, Ahmet Ay
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Stochastic Modeling Of Ovarian Follicle Growth In Adult Female Rats, Zhaozhi Li
Stochastic Modeling Of Ovarian Follicle Growth In Adult Female Rats, Zhaozhi Li
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Sdrap: An Annotation Pipeline For Highly Scrambled Genomes, Jasper Braun
Sdrap: An Annotation Pipeline For Highly Scrambled Genomes, Jasper Braun
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Network Reconstruction Using Computational Algebra And Gene Knockouts, Matthew Macauley
Network Reconstruction Using Computational Algebra And Gene Knockouts, Matthew Macauley
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Loop Homology Of Bi-Secondary Structures, Andrei Bura
Loop Homology Of Bi-Secondary Structures, Andrei Bura
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
The Energy-Spectrum Of Bicompatible Sequences, Wenda Huang
The Energy-Spectrum Of Bicompatible Sequences, Wenda Huang
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
On An Enhancement Of Rna Probing Data Using Information Theory, Thomas J.X. Li, Christian M. Reidys
On An Enhancement Of Rna Probing Data Using Information Theory, Thomas J.X. Li, Christian M. Reidys
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Color Space Standardization And Image Analysis For High-Throughput Phenotyping Of Sorghum Bicolor, Alexandria A. Pokorny
Color Space Standardization And Image Analysis For High-Throughput Phenotyping Of Sorghum Bicolor, Alexandria A. Pokorny
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Using Canalization For The Control Of Discrete Networks, David Murrugarra
Using Canalization For The Control Of Discrete Networks, David Murrugarra
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Determining The Relationship Between Aging And Oxidative Stress In A Drosophila Melanogaster P38 Kb Framework, Aleksandra J. Majewski
Determining The Relationship Between Aging And Oxidative Stress In A Drosophila Melanogaster P38 Kb Framework, Aleksandra J. Majewski
Theses and Dissertations
Aging is inevitable for all organisms and can be characterized by degeneration of tissue, adecrease in motor function, and impaired stress response. In humans, it is often accompanied by an increased propensity for age related diseases. While all adults experience biological aging (senescence) not all adults experience age-associated disease. Thus, we claim these are not normal prospects of aging. Although the implications of aging are well understood, the molecular underpinnings for these processes remain elusive. As advances in medical science have been successful at prolonging lifespan, they concurrently extend the amount of time spend in diseased states. If we wish …
The Use Of Course-Based Research In Computational Analysis Of Genomes To Enhance Student Learning, Christopher Shaffer
The Use Of Course-Based Research In Computational Analysis Of Genomes To Enhance Student Learning, Christopher Shaffer
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
G-Onramp: Create Genome Browsers That Enable Undergraduate Students To Participate In Collaborative Genome Annotations, Wilson Leung, Yating Liu, Luke Sargent, Jeremy Goecks, Sarah C.R. Elgin
G-Onramp: Create Genome Browsers That Enable Undergraduate Students To Participate In Collaborative Genome Annotations, Wilson Leung, Yating Liu, Luke Sargent, Jeremy Goecks, Sarah C.R. Elgin
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Chromosome Conformation In Context, James Taylor
Chromosome Conformation In Context, James Taylor
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Machine Learning Analysis Identifies Drosophila Grunge/Atrophin As An Important Learning And Memory Gene Required For Memory Retention And Social Learning, Balint Kacsoh
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
A Systems Level Approach To Temporal Expression Dynamics In Drosophila Reveals Clusters Of Long Term Memory Genes, Julianna Bozler, Balint Kacsoh, Giovanni Bosco
A Systems Level Approach To Temporal Expression Dynamics In Drosophila Reveals Clusters Of Long Term Memory Genes, Julianna Bozler, Balint Kacsoh, Giovanni Bosco
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Cage: A Tool For Identifying Genes With Correlated Spatiotemporal Expression, Basheer Becerra
Cage: A Tool For Identifying Genes With Correlated Spatiotemporal Expression, Basheer Becerra
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Fractal Analysis Of Dna Sequences, Christian G. Arias, Pedro Antonio Moreno Phd, Carlos Tellez
Fractal Analysis Of Dna Sequences, Christian G. Arias, Pedro Antonio Moreno Phd, Carlos Tellez
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Strategies To Avoid Overfitting Of Mcmc Bayesian Learning In Some Biological Applications, Diego M. Garcia
Strategies To Avoid Overfitting Of Mcmc Bayesian Learning In Some Biological Applications, Diego M. Garcia
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Using Citizen Science And Remote Sensing Data To Model Hummingbird Migration, Sarah R. Supp, Laura J. Graham, Frank A. La Sorte, Tina A. Cormier, Gil Bohrer, Donald Powers, Susan Wethington, Kevin Guay, Patrick Jantz, Scott Goetz, Catherine H. Graham
Using Citizen Science And Remote Sensing Data To Model Hummingbird Migration, Sarah R. Supp, Laura J. Graham, Frank A. La Sorte, Tina A. Cormier, Gil Bohrer, Donald Powers, Susan Wethington, Kevin Guay, Patrick Jantz, Scott Goetz, Catherine H. Graham
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Analyzing The Γδ T Cell Receptor Sequences Of Patients With Celiac Disease, Alanna P. Gary
Analyzing The Γδ T Cell Receptor Sequences Of Patients With Celiac Disease, Alanna P. Gary
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Modeling The Spread Of The Zika Virus At The 2016 Olympics, Triona S. Matheson, Brian Satterthwaite, Hannah L. Callender
Modeling The Spread Of The Zika Virus At The 2016 Olympics, Triona S. Matheson, Brian Satterthwaite, Hannah L. Callender
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Modeling Of Human Circadian Clock: Per3 Provides Molecular Support For Behavioral Observations, Ha T. Vu
Modeling Of Human Circadian Clock: Per3 Provides Molecular Support For Behavioral Observations, Ha T. Vu
Annual Symposium on Biomathematics and Ecology Education and Research
No abstract provided.
Modeling And Analysis Of Germ Layer Formations Using Finite Dynamical Systems, Alexander Garza, Megan Eberle, Eric A. Eager
Modeling And Analysis Of Germ Layer Formations Using Finite Dynamical Systems, Alexander Garza, Megan Eberle, Eric A. Eager
Spora: A Journal of Biomathematics
The development of an embryo from a fertilised egg to a multicellular organism proceeds through numerous steps, with the formation of the three germ layers (endoderm, mesoderm, ectoderm) being one of the first. In this paper we study the mesendoderm (the tissue that collectively gives rise to both mesoderm and endoderm) gene regulatory network for two species, \textit{Xenopus laevis} and the axolotl (\textit{Ambystoma mexicanum}) using Boolean networks. We find that previously-established bistability found in these networks can be reproduced using this Boolean framework, provided that some assumptions used in previously-published differential equations models are relaxed. We conclude by discussing our …
G-Quadruplex Dna Structures And Site Specific Genetic Instability, Jonathan David Williams
G-Quadruplex Dna Structures And Site Specific Genetic Instability, Jonathan David Williams
Theses and Dissertations
Repetitive DNA comprises a majority of the human genome yet functions and overall impacts on site-specific genetic instability are not fully defined. Repetitive G-rich sequences have the propensity to form G-quadruplex (G4), which are stable non-B form DNA structures. G4 structures are conspicuously found at regions of site-specific instability. Even so, human genomic loci capable of forming this structure and their connection to DNA rearrangements are just beginning to be elucidated. My dissertation focuses on G4 structures and their capacity to promote site-specific changes in the human genome, particularly at oncogenes. I identified and investigated new biologically relevant G4 loci …
Identification Of Transcriptionally Quiescent Regions In The Neurospora Crassa Genome, Katie Marie Groskreutz
Identification Of Transcriptionally Quiescent Regions In The Neurospora Crassa Genome, Katie Marie Groskreutz
Theses and Dissertations
Sexual reproduction and genetic exchange via meiosis are important and highly conserved processes in many living organisms. Occasionally, complications occur during meiosis that can result in chromosome abnormalities. In humans, improper chromosome development can cause life altering disorders such as Down Syndrome, Edwards Syndrome, and Patau Syndrome. Unfortunately, despite its importance, gaps remain in our knowledge of how this process works. For instance, little is known about how homolog identification occurs and what proteins identify matching chromosomes during pairing. This fundamental process occurs early during meiosis and ensures proper development of gametes.
Understanding the proteins involved during homolog pairing may …