Biodiversity Commons^™

Final Report Floating Upwelling System Harvest Road Oceans, Robert Michael, Scott Bennett

Fisheries Occasional Publications

A Floating Upwelling System or FLUPSY is a mechanical system for the culture of seed stock during the nursery stage of commercial bivalve production.

How Within-Host Priority Effects Between Specialist And Generalist Pathogens Affect Disease Risk, Jing Jiao, Michael H. Cortez

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Natterer In Neotropical Nematoda: Species Described By Rudolphi, Diesing, And Molin, Ricardo Guerrero

MANTER: Journal of Parasite Biodiversity

Between 1817 and 1835 Johann Natterer collected 1,729 samples of endoparasitic helminths in Brazil and southern Venezuela. Of the 323 names that were assigned to the collected nematode specimens, 163 are still valid and accepted species, 84 are still doubtful, and 76 must be rejected. In this work, each name is analyzed and correlated to the literature to clarify its taxonomic status.

The purpose of this review of the material collected by Natterer is to establish a complete list of all described species; their current status; and whether they are valid species, synonyms, or nomen nudum as well as to …

Diversity Of Tetrabothriidae (Eucestoda) Among Holarctic Alcidae (Charadriiformes): Resolution Of The Tetrabothrius Jagerskioeldi Cryptic Species Complex: Cestodes Of Alcinae—Provides Insights On The Dynamic Nature Of Tapeworm And Marine Bird Faunas Under The Stockholm Paradigm, Eric P. Hoberg, Kaylen Marie Soudachanh

MANTER: Journal of Parasite Biodiversity

We begin resolution of the Tetrabothrius jagerskioeldi–species complex with descriptions of Tetrabothrius alcae n. sp. based on numerous specimens, primarily in murres (species of Uria), from the greater North Pacific basin and Tetrabothrius sinistralis n. sp. based on cestodes in guillemots (species of Cepphus) from the central Bering Sea and West Greenland. These tetrabothriids are characterized, among 44 species of Tetrabothrius in avian hosts, by attributes of the scolex, male and female organ systems, structure and dimensions of the vitelline gland, numbers of testes, configuration of the genital atrium, genital papillae and the male and female atrial …

Fisheries Science Update – October 2021: West Coast Demersal Scalefish Resource, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Occasional Publications

Key points: 2021 stock assessment outcomes • The West Coast Demersal Scalefish Resource (WCDSR) is halfway into a 20-year recovery plan following a period of overfishing in the 1990s and 2000s. • This latest assessment provides an important “health check” on the recovery status. • The recovery plan is based on maintaining recreational (including charter) and commercial sector’s total fishing mortality below catch limits and protecting key spawning aggregations to recover the WCDSR by 2030. • The Department of Primary Industries and Regional Development (DPIRD) tracks recovery progress by undertaking weight of evidence stock assessments of WCDSR indicator species dhufish …

Nematode Biodiversity In Lincoln, Nebraska's Tallgrass Prairie Corridor, Abigail Borgmeier

Department of Plant Pathology: Dissertations, Theses, and Student Research

The tallgrass prairie was once one of the most diverse grasslands on the planet, however over 95% has been converted to agriculture in the past 150 years. The remaining prairie is still host to a wide variety of plants, insects, mammals, and soil-dwelling microorganisms, creating an incredibly complex ecosystem. The first aim of this study is to compare three approaches for the measurement of nematode diversity within a 10-mile-long protected prairie habitat corridor near Lincoln, Nebraska. The methods are 1) a traditional morphological analysis of 150 nematodes per study site, 2) a metabarcoding analysis using the 18S genetic marker of …

Decline In Amphibian Health In Local Stream, Elyse Vetter, Elise Dearment, Colton Russell, Audrey Fontes, Lee Kats

Seaver College Research And Scholarly Achievement Symposium

Many local streams of the Santa Monica Mountains are populated by the native California Newt, Taricha torosa, a species of special concern. Arroyo Sequit is one of these streams, the upper and lower portions of which are split by a culvert and the Mulholland Highway. This stream and the surrounding areas burned during the Woolsey fire of 2018. Since the fire, construction has been ongoing in and around the stream. Two years post-fire (during the summer of 2020) significantly more newts were found in the stream than years prior. A large proportion of these newts were unhealthy in appearance, …

A Guide To Helminth Parasites Reported From Shorebirds (Charadriidae) From The Americas, Albert G. Canaris, Sofia Capasso, Gay J. Canaris

MANTER: Journal of Parasite Biodiversity

The shorebird family Charadriidae in the Americas consists of 21 native and 7 vagrant species. Members of the family occupy a diversity of open habitats, ranging from Arctic tundra during nesting, coastal sands, and mudflats to inland prairies, savannas, and wetlands. Some native plovers migrate from nesting grounds in North America to wintering grounds in South America (Hayman et al., 1986; Paulson, 2005; Winkler et al., 2020). Our search of the literature revealed the following: 17 of 28 host species infected with helminth parasites, 153 helminth species, and 199 infections involving 13 geographic areas. The purpose of this guide is …

Monitoring Relationships Between Corticosterone And Snake Fungal Disease In Timber Rattlesnakes (Crotalus Horridus) In Western Kentucky, John Bromley Hewlett

Murray State Theses and Dissertations

Over the past four decades, emergent fungal diseases have been the most devastating relative to species declines and extinctions. While most research has focused on fungal diseases affecting amphibians and bats, less has focused on diseases like snake fungal disease (SFD), caused by Ophidiomyces ophiodiicola (Oo). SFD was first described in 2006 in North America within a Timber rattlesnake (Crotalus horridus) population in New Hampshire. Since then SFD has been documented in 19 US states, one US territory (Puerto Rico), and Europe. SFD causes high mortality in some species, including the Eastern Massasauga rattlesnakes (Sistrurus …

The Endangered California Condor (Gymnogyps Californianus) Population Is Exposed To Local Haemosporidian Parasites, M. Andreína Pacheco, Chris N. Parish, Timothy J. Hauck, Roberto F. Aguilar, Ananias A. Escalante

Harold W. Manter Laboratory of Parasitology: Library Materials

The endangered California Condor (Gymnogyps californianus) is the largest New World Vulture in North America. Despite recovery program success in saving the species from extinction, condors remain compromised by lead poisoning and limited genetic diversity. The latter makes this species especially vulnerable to infectious diseases. Thus, taking advantage of the program of blood lead testing in Arizona, condor blood samples from 2008 to 2018 were screened for haemosporidian parasites using a nested polymerase chain reaction (PCR) protocol that targets the parasite mitochondrial cytochrome b gene. Plasmodium homopolare (Family Plasmodiidae, Order Haemosporida, Phylum Apicomplexa), was detected in condors captured …

Steganoderma Stafford, 1904 (Digenea: Zoogonidae: Lepidophyllinae) From Two Species Of Rockfishes From Deep Waters Off Oregon Including A New Species And An Updated Key To Species Of This Genus, Charles K. Blend, Gábor R. Rácz

MANTER: Journal of Parasite Biodiversity

Steganoderma eamiqtrema n. sp. and a single unidentified specimen of Steganoderma Stafford, 1904 (Zoogonidae: Lepidophyllinae) obtained from the intestine of the greenstriped rockfish, Sebastes elongatus Ayres, 1859, and the flag rockfish, Sebastes rubrivinctus (Jordan and Gilbert, 1880) (Scorpaeniformes: Sebastidae), collected from 190–200 m depths off Oregon, USA, are described. The new species is distinguished from its seven other congeners by a diagnostic combination of morphological features including an elongate oval to spindle-shaped body, a clavate to comma-shaped cirrus pouch located in the forebody and hindbody, a bipartite seminal vesicle, a bifurcal or just post-bifurcal genital pore, a larger ventral than …

Vertebrates On The Brink As Indicators Of Biological Annihilation And The Sixth Mass Extinction, Gerardo Ceballos, Paul R. Ehrlich, Peter H. Raven

Harold W. Manter Laboratory of Parasitology: Library Materials

The ongoing sixth mass species extinction is the result of the destruction of component populations leading to eventual extirpation of entire species. Populations and species extinctions have severe implications for society through the degradation of ecosystem services. Here we assess the extinction crisis from a different perspective. We examine 29,400 species of terrestrial vertebrates, and determine which are on the brink of extinction because they have fewer than 1,000 individuals. There are 515 species on the brink (1.7% of the evaluated vertebrates). Around 94% of the populations of 77 mammal and bird species on the brink have been lost in …

A New Genus And Two New Species Of Unarmed Hymenolepidid Cestodes (Cestoda: Hymenolepididae) From Geomyid Rodents In Mexico And Costa Rica, Scott Lyell Gardner, Altangerel Tsogtsaikhan Dursahinhan, Mariel Campbell, S. Elizabeth Rácz

Scott L. Gardner Publications

Two new cestodes of the family Hymenolepididae are described from two species of rodents of the family Geomyidae collected in Mexico and Costa Rica. One new species of Hymenolepis is described from Cratogeomys planiceps Merriam 1895 from near Toluca, Mexico and another that we allocate to a new genus is described from Heterogeomys heterodus (Peters, 1865) from near Irazú Volcano, Costa Rica. Hymenolepis s. str. includes those Hymenolepididae with an apical organ, with no hooks on suckers or apical organ, and three testes. Hobergia irazuensis n. gen., n. sp. includes a hymenolepidid with an apical organ, unarmed scolex, small …

Before The Pandemic Ends: Making Sure This Never Happens Again, Daniel R. Brooks, Eric P. Hoberg, Walter A. Boeger, Scott Lyell Gardner, Sabrina B. L. Araujo, Katalin Bajer, Sebastian Botero-Cañola, Brian Byrd, Gábor Földvári, Joseph A. Cook, Jonathan L. Dunnum, Altangerel Tsogtsaikhan Dursahinhan, László Zsolt Garamszegi, Dávid Herczeg, Ferenc Jakab, Alicia Juarrero, Gábor Kemenesi, Kornélia Kurucz, Virginia León-Règagnon, Hugo H. Mejía-Madrid, Orsolya Molnár, Richard A. Nisbett, Wolfgang Preiser, Michael Stuart, Eors Szathmary, Valeria Trivellone

Scott L. Gardner Publications

Introduction

On 30 January 2020, the World Health Organization (WHO) declared a Global Health Emergency of international concern attendant to the emergence and spread of SARS-CoV-2, nearly two months after the first reported emergence of human cases in Wuhan, China. In the subsequent two months, global, national and local health personnel and infrastructures have been overwhelmed, leading to suffering and death for infected people, and the threat of socio-economic instability and potential collapse for humanity as a whole. This shows that our current and traditional mode of coping, anchored in responses after the fact, is not capable of dealing with …

Gaharitrema Droneni N. Gen., N. Sp. (Digenea: Zoogonidae: Lepidophyllinae) From The Pudgy Cuskeel, Spectrunculus Grandis (Ophidiiformes: Ophidiidae), From Deep Waters Off Oregon, With Updates Keys To Zoogonid Subfamilies And Genera, Charles K. Blend, Gábor R. Rácz, Scott Gardner

Scott L. Gardner Publications

Gaharitrema droneni n. gen., n. sp. (Digenea: Zoogonidae: Lepidophyllinae) is described from the intestine of the pudgy cuskeel, Spectrunculus grandis (Gu¨ nther, 1877) (Ophidiiformes: Ophidiidae), collected at 2,800 m depth from the northeastern Pacific Ocean off Oregon. The new genus is distinguished from Brachyenteron Manter, 1934 and Steganoderma Stafford, 1904, the 2 closest lepidophylline genera, and from 4 other zoogonid genera erected since 2007, the last major revision of the family, by a combination of diagnostic features including a pyriform or spindle-shaped body, smooth testes and ovary, narrow ceca that reach with the vitellarium into the hindbody, an unspecialized ventral …

Two New Nematodes From The Families Molineidae And Strongyloididae (Nemata): Parasites Of Caenolestes (Mammalia: Paucituberculata: Caenolestidae) From The Andes Of Ecuador, Ricardo Guerrero

MANTER: Journal of Parasite Biodiversity

A new genus and species of Molineinae (Nemata: Trichostrongyloidea) is described. It is similar to Molineus but differs in ray 4 being longest instead of shortest. In addition, a new species of Parastrongyloides is described that is characterized by a short digitiform appendix on the tail and spicule tips with fine points. It is the second species known with two morphotypes of the females.

Resumen:

Se describe un nuevo género y especie de Molineinae (Nemata: Trichostrongyloidea), similar a Molineus pero difiere en que en la bolsa caudal el rayo 4 es el más largo en lugar de sewr el …

Insights About Diversity Of Tetrabothriidae (Eucestoda) Among Holarctic Alcidae (Charadriiformes): What Is Tetrabothrius Jagerskioeldi?, Eric P. Hoberg, Kaylen Marie Soudachanh

MANTER: Journal of Parasite Biodiversity

Tetrabothriid cestodes are characteristic helminths that infect species of seabirds globally. We begin with the exploration of the diversity of tapeworms of the genus Tetrabothrius Rudolphi, 1819 (Eucestoda: Tetrabothriidae), some of which are distributed among seabirds of the family Alcidae (Charadriiformes) at boreal to higher latitudes of Holarctic seas. During the course of 2 decades of field inventory from 1975 through the early 1990s (in addition to earlier collections assembled by Robert L. Rausch and colleagues in Alaska initiated in the late 1940s), an extensive series of tapeworm specimens attributable to species of Tetrabothrius was recovered from seabirds across the …

The Enigmatic Spelaeorhynchidae Oudemans, 1902 (Acari: Mesostigmata) Blood-Feeding Ectoparasites Infesting Neotropical Bats, With Catalog And Notes On A Collection From The Manú Biosphere Reserve In Peru, Donald Gettinger, Madalyne Epperson, Candy Hermasillo, Scott L. Gardner

MANTER: Journal of Parasite Biodiversity

A survey of ectoparasites associated with bats collected along an elevational transect in the Manú Biosphere Reserve, Peru, includes specimens of two species of an unusual and rarely collected family of parasitic mites, the Spelaeorhynchidae Oudemans, and reveals information on the natural occurrence of these infections. In lowland rainforest (450–1,000 m) along the Rio Alto Madre de Dios, Spelaeorhynchus soaresi Peracchi was recorded exclusively infecting two species of frugivorous Carollia, C. brevicauda and C. perspicillata. At higher elevations in the mountains and cloud forests, Spelaeorhynchus praecursor Neumann exclusively infected two species of nectarivorous Anoura, A. cultrata and A. …

What Makes Bats Special So That They Are Reservoirs For So Many Different Pathogens?, Deion Anderson, Eleanor Gorkovchenko, Nicole Hamada, Carolina Martinez, Lupe Martinez

2020 Symposium Posters

Bats, order Chiroptera, comprise more than 20 percent of all living mammal species with more than 1100 species. Bats are organisms that have high body temperatures and metabolic rates. Therefore, viral adaptation to febrile conditions in the bat host might explain the high reservoir competence that distinguishes these organisms from other mammalian hosts. The purpose of this study is to present a comparative meta-review of the available evidence in order to investigate and identify the reasons or characteristics as to what makes bats special reservoirs for so many different pathogens. Our investigation will not focus on a particular bat species, …

Wildlife Health Systems, Lee Skerratt

Animal Sentience

Wildlife health systems aim to ensure that all animal life is healthy and resilient. They protect biodiversity and ecosystem services and ensure that the risk of spillover of pathogens is mitigated. These systems are flexible, multidisciplinary and cross-sectorial. They can manage a variety of threats to life that arise in different communities and cultures. Very small investments are required to ensure that wildlife health systems function effectively.

Efficient Coi Barcoding Using High Throughput Single-End 400 Bp Sequencing, Chentao Yang, Yuxuan Zheng, Shangjin Tan, Guanliang Meng, Wei Rao, Caiqing Yang, David G. Bourne, Paul A. O'Brien, Junqiang Xu, Sha Liao, Ao Chen, Xiaowei Chen, Xinrui Jia, Ai-Bing Zhang, Shanlin Liu

Harold W. Manter Laboratory of Parasitology: Library Materials

Background

Over the last decade, the rapid development of high-throughput sequencing platforms has accelerated species description and assisted morphological classification through DNA barcoding. However, the current highthroughput DNA barcoding methods cannot obtain full-length barcode sequences due to read length limitations (for example, a maximum read length of 300 bp for the Illumina’s MiSeq system), or are hindered by a relatively high cost or low sequencing output (e.g. a maximum number of eight million reads per cell for the PacBio’s SEQUEL II system).

Results

Pooled cytochrome c oxidase subunit I (COI) barcodes from individual specimens were sequenced on the …

Host Relationships And Geographic Distribution Of Species Of Blanchard, 1848 (Onchoproteocephalidea, Onchobothriidae) In Elasmobranchs: A Metadata Analysis, Francisco Zaragoza-Tapia, Griselda Pulido-Flores, Scott L. Gardner, Scott Monks

Scott L. Gardner Publications

Species of Acanthobothrium have been documented as parasites of the spiral intestine of elasmobranchs. Results of a metadata analysis indicate that 114 species of elasmobranchs have been reported as hosts of 200 species of Acanthobothrium. The metadata analysis revealed that 3.7% of species of sharks and 14.9% of species of rays that have been reported as hosts to date; some species are parasitized by more than one species of Acanthobothrium. This work provides a Category designation, as proposed by Ghoshroy and Caira (2001), for each species of Acanthobothrium. These Category designations are a tool to facilitate comparisons …

Obituary: Sydney Anderson (1927–2018), Scott Lyell Gardner, Robert M. Timm, Nancy Olds, Hugh H. Genoways

Scott L. Gardner Publications

On August 12, 2018, the American Society of Mammalogists (ASM) lost one of its giants of the latter half of the 20th century when Sydney Anderson quietly passed away at his home in Birmingham, Alabama, at the age of 91. “Syd,” to his many friends and colleagues, was born on January 11, 1927 in Topeka, Kansas, to Robert Grant and Evelyn Fern (Hunt) Anderson.

Anderson began his professional career at the University of Kansas, where for four years (1955–1959) he served as Assistant Curator in charge of mammals in the Museum of Natural History, and Instructor in the Department of …

Cercarial Parasitism Of Freshwater Snails In Sandhills Ponds Versus Streams, Caroline Emily Spethman

Honors Program: Senior Projects (Public)

Parasite prevalence was calculated for all aquatic snails collected from four freshwater localities in Western Nebraska from Summer 2016 to 2019: Dunwoody Pond, Haythorn Ranch, Neven’s Restoration, and Breen’s Flyaway. With data of increasing trematode cercarial infection specifically at Dunwoody Pond, this community was further studied. In Summer 2019, a total of 217 freshwater snails representing species of Physa sp., Stagnicola elodes (Say,1821), and Helisoma anceps (Menke,1830) were collected from Dunwoody Pond and Dunwoody stream, near Ogallala, Nebraska. Eighty-one snails were collected from Dunwoody Pond, 76 snails were collected 31 meters upstream, and 60 snails were collected 61 meters upstream …

The Ecological Niche Of Echinococcus Multilocularis In North America: Understanding Biotic And Abiotic Determinants Of Parasite Distribution With New Records In New Mexico And Maryland, United States, Sebastian Botero-Cañola, Altangerel Tsogtsaikhan Dursahinhan, Sara E. Rácz, Parker V. Lowe, John E. Ubelaker, Scott Lyell Gardner

Scott L. Gardner Publications

English abstract: Understanding the factors shaping the niche of parasites and its expression over geographical space and through time continues to be a modern scientific challenge with the results of research in this area directly influencing both theoretical and applied biology. This is especially important for proactive management of zoonotic parasites such as Echinococcus multilocularis, the etiologic agent of alveolar echinococcosis. Echinococcus multilocularis has a Holarctic distribution; with its geographic range and prevalence increasing recently in areas of the western Palearctic, while its distribution dynamics are poorly understood in the Nearctic. In this paper, we use an ecological niche …

Island Invasion: The Silent Crisis In Hawaii, Sophia Janssen

Pomona Senior Theses

Keeping out invasive species may, upon first review, seem like a trivial environmental cry from ecologists and deep environmentalists; a belated wish to return to an undeveloped world where nature was pristine. However invasive species create problems that impact all of us and can have far more severe consequences than changing a stunning landscape. These problems are heightened in islands like Hawaii, where the fragile ecosystems have developed over centuries of evolution and adaptation. The introduction of a disease-carrying mosquito can put the people of Hawaii at risk to many vector-born illnesses and create an epidemic, taking human life. The …

Impact Of Seasonal And Host-Related Factors On The Intestinal Microbiome And Cestode Community Of Sorex Cinereus And Sorex Monticola, Katelyn D. Cranmer

College of Graduate Studies: Theses & Dissertations

The intestinal microbiome of mammals plays a significant role in host health and response to environmental stimuli and can include both beneficial native bacteria as well as parasitic worms. In this study, I examined the intestinal cestode and bacterial communities of two closely related species of shrew, Sorex monticola and Sorex cinereus, over a six month period in 2016. Specimens were collected approximately every three weeks from May to October from the Sangre de Cristo Mountains in Cowles, New Mexico. A total of 79 shrews were prepared with the gastrointestinal tracts removed and flash-frozen in liquid nitrogen. An additional …

Mastering Mycological Mysteries With Explorations Of Harpellales Associated With Culicidae And Other Dipterans In Idaho, Michael Mccormick

Boise State University Theses and Dissertations

Presented is the first field survey and laboratory-based study focused on Harpellales gut fungi found in Culicidae (mosquito) larvae collected from various parts of Idaho. Overall, 34 sites were sampled ranging from urban storm drains and irrigation puddles to pristine stream-side puddles. These sites yielded 17 different species of mosquitoes and three previously described species of gut fungi. Three species of mosquitoes were the first recorded observations as hosts of the following gut fungi: Culiseta alaskaensis was infested with Zancudomyces culisetae (from Renwyck Creek), Culex tarsalis with Smittium culicis (from Cottonwood Creek), and Ochleratus sp. with Smittium minutisporum (from Bear …

Triatomines: Trypanosomatids, Bacteria, And Viruses Potential Vectors?, Caroline Barreto Viera, Yanna Reis Praça, Kaio Luis Da Silva Bentes, Paula Beatriz Santiago, Sofia Marcelino Martins Silva, Gabriel Dos Santos Silva, Flávia Nader Motta, Izabela Marques Dourado Bastos, Jaime Martins De Santana, Carla Nunes De Araújo

Harold W. Manter Laboratory of Parasitology: Library Materials

Triatominae bugs are the vectors of Chagas disease, a major concern to public health especially in Latin America, where vector-borne Chagas disease has undergone resurgence due mainly to diminished triatomine control in many endemic municipalities. Although the majority of Triatominae species occurs in the Americas, species belonging to the genus Linshcosteus occur in India, and species belonging to the Triatoma rubrofasciata complex have been also identified in Africa, the Middle East, South-East Asia, and in the Western Pacific. Not all of Triatominae species have been found to be infected with Trypanosoma cruzi, but the possibility of establishing vector transmission …

Museum Metabarcoding: A Novel Method Revealing Gut Helminth Communities Of Small Mammals Across Space And Time, Stephen E. Greiman, Joseph A. Cook, Vasyl V. Tkach, Eric P. Hoberg, Damian M. Menning, Andrew G. Hope, Sarah A. Sonsthagen, Sandra L. Talbot

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Natural history collections spanning multiple decades provide fundamental historical baselines to measure and understand changing biodiversity. New technologies such as next generation DNA sequencing have considerably increased the potential of museum specimens to address significant questions regarding the impact of environmental changes on host and parasite/pathogen dynamics. We developed a new technique to identify intestinal helminth parasites and applied it to shrews (Eulipotyphla: Soricidae) because they are ubiquitous, occupy diverse habitats, and host a diverse and abundant parasite fauna. Notably, we included museum specimens preserved in various ways to explore the efficacy of using metabarcoding analyses that may enable identification …