Zoology Commons^™

Rare, Threatened And Endangered Species Of Oregon (2010), James S. Kagan, Sue Vrilakas, Eleanor P. Gaines, Cliff Alton, Lindsey Koepke, John A. Christy, Erin Doyle

Institute for Natural Resources Publications

Extinction is a natural process. Today, however, plant and animal species are disappearing world-wide at an accelerated pace. Based on current trends, half of the species on earth will be extinct within the next 100 years. The major cause of this phenomenon is human caused changes to the environment, which continue to increase - in Oregon and throughout the world.

Once lost, a species can never be recovered, and there is no way of knowing how useful it may have been. We do know that human beings and many of their industries depend on plant and animal products. About 50% …

Bats Of The Grenadine Islands, West Indies, And Placement Of Koopman's Line, Hugh H. Genoways, Gary G. Kwiecinski, Peter A. Larsen, Scott C. Pedersen, Roxanne J. Larsen, Justin D. Hoffman, Mark De Silva, Carleton J. Phillips, Robert J. Baker

University of Nebraska State Museum: Mammalogy Papers

Almost nothing is known concerning the chiropteran fauna on the Grenadine Islands, a chain of islands between St. Vincent and Grenada located near the southern end of the Lesser Antilles. Previously, only a single species—Glossophaga longirostris—had been reported from the Grenadines. Our research, conducted on 4 occasions over the period of 1980 to 2006, provided museum vouchers and genetic specimens for the addition of 4 other species to the known fauna of these islands—Noctilio leporinus, Artibeus lituratus, Artibeus schwartzi, and Molossus molossus. The Grenadines, being situated between St. Vincent and Grenada, occupy an important zoogeographic position. …

Beobachtungen Zu Unterscheidungsmerkmalen An Equidenschädeln, Speziell Zwischen Denen Von Mongolischen Dschiggetai Und Pferden, Roland Müller, Joachim Wussow

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

First paragraph:

Von STUBBE et.al. wurden zwischen 2001 und 2004 in der Südmongolei ca. 400 Schädel des Dschiggetai (Equus hemionus hemionus) gesammelt.

Comparative Morphology Of Two Sympatric Species Of Hedgehog In Ikh Nart Nature Reserve, Mongolia, Richard P. Reading, David Kenny, Sodnomphil Batdorj, James Murdoch

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

Daurian hedgehog (Mesechinus dauuricus) and long-eared hedgehog (Hemiechinus auritus) inhabit Ikh Nart Nature Reserve, Mongolia and both species appear to occupy similar niches. We gathered morphological measurements to test for differences between species and sexes. We hoped to gain insight into the mechanisms that allow the species to coexist. We collected morphometric data from 10 long-eared hedgehogs (6 male, 4 female) and 18 Daurian hedgehogs (10 male, 7 female, and 1 unknown sex). Only total body length in Daurian hedgehogs differed significantly between males and females. Otherwise, we found no significant differences between morphometric measures of …

Estimates Of Toad Headed Agama Density In Three Steppe Habitats Of Mongolia, James Murdoch, Buyandelger Suuri, Richard P. Reading

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

The toad headed agama (Phrynocephalus versicolor) ranges across the arid steppe regions of southern and western Mongolia and represents one of the most common reptiles in the country. However, few details of the species’ population characteristics exist, which may be important for evaluating population trends and assessing its conservation status. We estimated toad headed agama density in Ikh Nart Nature Reserve, Mongolia based on surveys conducted in the summers (June-September) of 2005, 2006, 2008, and 2009. We conducted surveys in three steppe habitats including tall grassland (n = 7), shrub-steppe (n = 7), and semi-shrub steppe …

Beitrag Zur Säugetierfauna Des Staatlichen Naturschutzgebietes Azas In Tyva/Südsibirien = Contributions To Fauna And Ecology Of Small Mammals Of State Nature Reserve “Azas” In The Republic Of Tyva /South Siberia, Annegret Stubbe, Michael Stubbe, V. V. Unžakov, A. P. Saveljev, N. I. Putincev, W. Stubbe

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

During 1988-2004 Russian and German biologists carried out a research of biodiversity of the mountain taiga within the territory of State Nature Reserve “Azas” (Republic of Tyva/Russia). Along with executing the main task – studying and development of an aboriginal population of Tuvinian beavers Castor fiber tuvinicus – materials on the fauna of small mammals of the Todzha kettle were collected. On the basis of samples (about 550 collected micromammals) information on the occurrence, reproduction and morphometric characteristics of four species of Insectivora, six species of Chiroptera and eleven species of small Rodentia inhabiting the territory of the reserve “Azas” …

Temporal Dynamics Of Group Size And Sexual Segregation In Ibex, N. J. Singh, S. Amgalanbaatar, Richard P. Reading

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

Group size is an important variable describing behavioral ecology of animals. A variety of factors such as habitat characteristics, life history, spatio-temporal resource dynamics, population density, predation risk, competition with kin, and social learning often determine group size in large mammals. We studied temporal dynamics of group size in Siberian ibex (Capra sibirica) in a protected area in Mongolia. We measured monthly and yearly variations in typical group size and used the sexual segregation and aggregation statistic to assess sexual segregation. Ibex formed the largest groups in November and smallest groups in July. However, group sizes did not …

Characteristics Of Mongolian Wild Ass Hooves (Equus Hemionus Hemionus), Jan Gahsche, Michael Stubbe, Matthias Oppermann, N. Batsajchan, Annegret Stubbe

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

Measurements of hoof angles, hoof length, toe length, etc., and non-metrical hoof characters of Mongolian Wild Ass carcasses collected in in the South Gobi and in Bordzongijn-Gobi desert are presented. Khulan hooves are flat, wide and look big in relation to the animal’s dimensions. Remarkably is the wide variability in size, angles, in non metric characteristics like shape, color and the occurrence of particularly prolonged hoof wall and flaring walls. For example, toe angles are 52° for front and 54° for hind hooves on average. This measures and the suggested graphical model of the „ideal hoof shape“ can assist to …

Betr.: Schutz Des Wildesels/Kulans (Equus H. Hemionus) In Der Mongolei [Letter], Annegret Stubbe, Michael Stubbe

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

Letter to R. Grube of Deutschen Bahn AG in Berlin, Germany, asking for dispensation as the authors attempted to relocate a herd of wild asses (Equus h. hemionus) from a site in Mongolia where they would in harm's way due to development.

Water Use Of Asiatic Wild Asses In The Mongolian Gobi, Petra Kaczensky, V. Dresley, D. Vetter, H. Otgonbayar, C. Walzer

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

Water is a key resource for most large bodied mammals in the world’s arid areas. With the growing human population, access to water for wildlife often becomes compromised. Equids are typical inhabitants of semi-arid to arid rangelands and need regular access to fresh water. However, their water needs are difficult to study under free-ranging conditions. In this study we investigated Asiatic wild ass (Equus hemionus) use of permanent water points in the Great Gobi B Strictly Protected Area (SPA) in south-western Mongolia. We combined observational data from one specific water point with high frequency GPS location data from …

The Use Of High Frequency Gps Data To Classify Main Behavioural Categories In A Przewalski’S Horse In The Mongolian Gobi, Petra Kaczensky, Klaus Huber

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

Behavioral observations of free ranging animals can provide important insight into many aspects of their biology but are not without problems. The recent development of GPS technology allows to remotely collect high precision location data at fixed intervals. We tested whether it is possible to classify the behavior of a Przewalski’s horse in the Mongolian Gobi into Resting, Grazing and Moving based on GPS locations collected at 15 minute intervals by comparing GPS data with direct observations. Although behavioral categories lasting for 15 minutes could by fairly reliably separated based on the distances covered between successive fixes, almost half the …

Ectoparasites Of Bats In Mongolia (Ischnopsyllidae, Nycteribiidae, Cimicidae And Spinturnicidae), Ingo Sceffler, Dietrich Dolch, Jargalsaikhan Ariunbold, Nyamsuren Batsajchan, Andreas Abraham, Klaus Thiele

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

For large parts of the world, the knowledge of bat ectoparasites is still scanty. Regarding Mongolia, only few studies exist to date. This paper analyzes results from extensive captures between 2005-2008, carried out in different sites of Mongolia. Discussed ectoparasites include bat fleas, (Ischnopsyllidae), bat flies (Nycteribiidae), and bat bugs (Cimicidae) and spinturnicid mites (Spinturnicidae). A number of species found in this study were new records for Mongolia, and for many species additional sites were reported. For some bat species, the spectrum and frequency of larger ectoparasites could be determined for the first time.

Isolation And Characterization Of Microsatellite Loci From Wild Striped Snakehead (Channa Striata)., Yasmeen Sameer Mahmoud Salah

Student Works (2010-2019)

Channa striata (better known as Haruan in Malaysia), is a freshwater species that is well known as a protein source and also for its pharmaceutical value among wounded patients. Unfortunately stocks have declined over the past few years, thus an in-depth study is needed to rule out genetic irregularities that might be causing the slow extinction of the species. This study was conducted for the purpose of studying the population diversity and genetic structure of Channa striata (striped snakehead) in seven different locations around the peninsular of Malaysia. Microsatellite markers were isolated and identified using Random Amplified Microsatellite (RAM) primers. …

Light Whole Genome Sequence For Snp Discovery Across Domestic Cat Breeds, James C. Mullikin, Nancy F. Hansen, Lei Shen, Heather Ebling, William F. Donahue, Wei Tao, David J. Saranga, Adrianne Brand, Marc J. Rubenfield, Alice C. Young, Pedro Cruz, Carlos Driscoll, Victor David, Samer W. K. Al-Murrani, Mary F. Locniskar, Mitchell S. Abrahamsen, Stephen J. O'Brien, Douglas R. Smith, Jeffrey A. Brockman

Biology Faculty Articles

Background

The domestic cat has offered enormous genomic potential in the veterinary description of over 250 hereditary disease models as well as the occurrence of several deadly feline viruses (feline leukemia virus -- FeLV, feline coronavirus -- FECV, feline immunodeficiency virus - FIV) that are homologues to human scourges (cancer, SARS, and AIDS respectively). However, to realize this bio-medical potential, a high density single nucleotide polymorphism (SNP) map is required in order to accomplish disease and phenotype association discovery.

Description

To remedy this, we generated 3,178,297 paired fosmid-end Sanger sequence reads from seven cats, and combined these data with the …

Where Are The Parasites? [Letters], Susan J. Kutz, Andy P. Dobson, Eric P. Hoberg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

First paragraph:

The review by E. Post et al. ("Ecological dynamics across the Arctic associated with recent climate change," 11 September 2009, p. 1,355) paid little heed to parasites and other pathogens. The rapidly growing literature on parasites in arctic and subarctic ecosystems provides empirical and observational evidence that climate-linked changes have already occurred. The life cycle of the protostrongylid lungworm of muskoxen, Umingmakstrongylus pallikuukensis, has changed, and the range of that organism and the winter tick, Dermacentor albipictus, has expanded.

The Taming Of The Cat, Carlos A. Driscoll, Juliet Clutton-Brock, Andrew C. Kitchener, Stephen J. O'Brien

Biology Faculty Articles

This article discusses research into the evolution of domesticated cats, which is complicated by the fact that they do not appear to serve humans. Although several species are morphologically similar, genetic research focusing on mitochondrial DNA and genetic microsatellites found that domesticated cats descended from F. sylvestris lybica. Archaeological research indicating cats came to live with humans as the prevalence of house mice in agricultural settlements increased is noted. Insets: The House Cat's Ancestor; Early Domestication; From Wild to Mild; The Truth about Cats and Dogs

Reintroduction Of The Chinese Tiger, Philip J. Nyhus, Urs Breitenmoser, Ron Tilson

Faculty Scholarship

No abstract provided.

Characterization Of 24 Microsatellite Loci In Delta Smelt, Hypomesus Transpacificus, And Their Cross-Species Amplification In Two Other Smelt Species Of The Osmeridae Family, Kathleen M. Fisch, Jessica Lynn Petersen, Melinda R. Baerwald, John K. Pedroia, Bernie May

Department of Animal Science: Faculty Publications

We characterized 24 polymorphic tetranucleotide microsatellite loci for delta smelt (Hypomesus transpacificus) endemic to the San Francisco Bay Estuary, California, USA. Screening of samples (n = 30) yielded two to 26 alleles per locus with observed levels of heterozygosity ranging from 0.17 to 1.0. Only one locus deviated from Hardy–Weinberg equilibrium, suggesting these individuals originate from a single panmictic population. Linkage disequilibrium was found in two pairs of loci after excluding the locus out of Hardy–Weinberg equilibrium. Twenty-two primer pairs cross-amplified in wakasagi smelt (Hypomesus nipponensis), and 15 primer pairs cross-amplified in longfin smelt ( …

Thirty-Seven Additional Microsatellite Loci In The Pacific Lion-Paw Scallop (Nodipecten Subnodosus) And Cross-Amplification In Other Pectinids, Jessica Lynn Petersen, Ana M. Ibarra, Bernie May

Department of Animal Science: Faculty Publications

We characterized 37 new microsatellite markers in the Pacific lion-paw scallop (Nodipecten subnodosus) and tested for cross-amplification in four other species. Genetic diversity was estimated using 24 individuals from the Lagoon Ojo de Liebre, B.C.S., Mexico. Allelic richness varied from 5 to 27 alleles per locus and the average expected heterozygosity was 0.76. Ten loci exhibited significant departure from Hardy–Weinberg equilibrium likely due to the presence of null alleles. Sixteen of these markers cross-amplified in closely related N. nodosus, while little or no amplification was observed in three Argopecten species.

Mitochondrial Phylogeography Illuminates The Origin Of The Extinct Caspian Tiger And Its Relationship To The Amur Tiger, Carlos A. Driscoll, Nobuyuki Yamaguchi, Gila Kahila Bar-Gal, Alfred L. Roca, Shu-Jin Luo, David W. Macdonald, Stephen J. O'Brien

Biology Faculty Articles

The Caspian tiger (Panthera tigris virgata) flourished in Central Asian riverine forest systems in a range disjunct from that of other tigers, but was driven to extinction in 1970 prior to a modern molecular evaluation. For over a century naturalists puzzled over the taxonomic validity, placement, and biogeographic origin of this enigmatic animal. Using ancient-DNA (aDNA) methodology, we generated composite mtDNA haplotypes from twenty wild Caspian tigers from throughout their historic range sampled from museum collections. We found that Caspian tigers carry a major mtDNA haplotype differing by only a single nucleotide from the monomorphic haplotype found across …

Recent Occurrence Of An American Black Bear In Nebraska, Justin D. Hoffman, Sam Wilson, Hugh H. Genoways

University of Nebraska State Museum: Mammalogy Papers

We report on a young male, cinnamon-phase American black bear (Ursus americanus) that was collected in northwestern Nebraska on May 12, 2008. This specimen represents the first black bear taken in Nebraska since 1907. Cranial characteristics and mass of the individual indicated a 15–16-month old bear. This bear may have dispersed from the Laramie Mountains in southeastern Wyoming along the North Platte River into western Nebraska. This record adds to the growing number of cases where large carnivores are reinvading previously occupied territory in the Great Plains. These reinvasions potentially have broad ecological implications to local prey populations …

The Evolutionary Dynamics Of The Lion Panthera Leo Revealed By Host And Viral Population Genomics, Agostinho Antunes, Jennifer L. Troyer, Melody E. Roelke, Jill Pecon-Slattery, Craig Packer, Christiaan Winterbach, Graham Hemson, Laurence G. Frank, Philip Stander, Ludwig Siefert, Margaret Driciru, Paul J. Funston, Kathy A. Alexander, Katherine C. Prager, Gus Mills, David E. Wildt, Mitch E. Bush, Stephen J. O'Brien, Warren E. Johnson

Biology Faculty Articles

The lion Panthera leo is one of the world's most charismatic carnivores and is one of Africa's key predators. Here, we used a large dataset from 357 lions comprehending 1.13 megabases of sequence data and genotypes from 22 microsatellite loci to characterize its recent evolutionary history. Patterns of molecular genetic variation in multiple maternal (mtDNA), paternal (Y-chromosome), and biparental nuclear (nDNA) genetic markers were compared with patterns of sequence and subtype variation of the lion feline immunodeficiency virus (FIV_Ple), a lentivirus analogous to human immunodeficiency virus (HIV). In spite of the ability of lions to disperse long distances, …

Mitochondrial Genomes Reveal An Explosive Radiation Of Extinct And Extant Bears Near The Miocene-Pliocene Boundary, Johannes Krause, Tina Unger, Aline Nocon, Anna-Sapfo Malaspinas, Sergios-Orestis Kolokotronis, Mathias Stiller, Leopoldo Soibelzon, Helen Spriggs, Paul H. Dear, Adrian W. Briggs, Sarah C. E. Bray, Stephen J. O'Brien, Gernot Rabeder, Paul Matheus, Alan Cooper, Montgomery Slatkin, Svante Paabo, Michael Hofreiter

Biology Faculty Articles

Background: Despite being one of the most studied families within the Carnivora, the phylogenetic relationships among the members of the bear family (Ursidae) have long remained unclear. Widely divergent topologies have been suggested based on various data sets and methods.

Results: We present a fully resolved phylogeny for ursids based on ten complete mitochondrial genome sequences from all eight living and two recently extinct bear species, the European cave bear (Ursus spelaeus) and the American giant short-faced bear (Arctodus simus). The mitogenomic data yield a well-resolved topology for ursids, with the sloth bear at the basal …

The Adaptive Evolution Of The Mammalian Mitochondrial Genome, Rute R. Da Fonseca, Warren E. Johnson, Stephen J. O'Brien, Maria J. Ramos, Agostinho Antunes

Biology Faculty Articles

Background

The mitochondria produce up to 95% of a eukaryotic cell's energy through oxidative phosphorylation. The proteins involved in this vital process are under high functional constraints. However, metabolic requirements vary across species, potentially modifying selective pressures. We evaluate the adaptive evolution of 12 protein-coding mitochondrial genes in 41 placental mammalian species by assessing amino acid sequence variation and exploring the functional implications of observed variation in secondary and tertiary protein structures.

Results

Wide variation in the properties of amino acids were observed at functionally important regions of cytochrome b in species with more-specialized metabolic requirements (such as adaptation to …

Scale-Dependent Habitat Use By Fall Migratory Birds: Vegetation Architecture, Floristics, And Geographic Consistency, Jill Deppe, John Rotenberry

Faculty Research & Creative Activity

Animal habitat selection is a central focus of ecology and conservation biology. Understanding habitat associations in migratory animals is particularly complicated because individuals have variable habitat requirements during the annual cycle, across their geographic range, along migratory routes, and at multiple spatial scales. We studied habitat associations of 16 fall Nearctic–Neotropical migratory land birds at two spatial scales at a stopover site along the northern Yucatan coast to examine scale-dependent habitat use, identify proximate cues shaping birds' distributions, and evaluate similarities in habitat use between our tropical stopover site and temperate sites. We addressed scale-dependent habitat associations in two ways, …

Scale-Dependent Habitat Use By Fall Migratory Birds: Vegetation Architecture, Floristics, And Geographic Consistency, Jill L. Deppe, John T. Rotenberry

Faculty Research & Creative Activity

Animal habitat selection is a central focus of ecology and conservation biology. Understanding habitat associations in migratory animals is particularly complicated because individuals have variable habitat requirements during the annual cycle, across their geographic range, along migratory routes, and at multiple spatial scales. We studied habitat associations of 16 fall Nearctic–Neotropical migratory land birds at two spatial scales at a stopover site along the northern Yucatan coast to examine scale-dependent habitat use, identify proximate cues shaping birds' distributions, and evaluate similarities in habitat use between our tropical stopover site and temperate sites. We addressed scale-dependent habitat associations in two ways, …

Historic And Recent Distributions Of Elk In Nebraska, Kent A. Fricke, Michael A. Cover, Scott E. Hygnstrom, Scott R. Groepper, Hugh H. Genoways, Kit M. Hams, Kurt C. Vercauteren

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

Elk (Cervus elaphus) were historically found throughout North America but were extirpated from Nebraska and much of the Great Plains in the 1880s due to consumptive uses by settlers, miners, market hunters, and others. Elk began to reappear in Nebraska in the 1950s and 1960s, and established a stable, nonmigratory population that currently consists of seven herds and an estimated 1,400 individuals throughout western and central Nebraska. The reappearance and subsequent persistence of elk in Nebraska suggests there is adequate habitat to support a self-sustaining population. The general movement of elk eastward may lead to an eventual statewide …

Out Of South America: Multiple Origins Of Non-Native Apple Snails In Asia, Kenneth Hayes

Department of Biology Faculty Publications

Apple snails (Ampullariidae: Pomacea) native to the New World have become agricultural and environmental pests widely in southern and eastern Asia since their introduction in about 1980. Although their impacts have been extensively documented, considerable confusion persists regarding their identities and geographical origins. Efforts to resolve the confusion have suffered from inadequate taxonomic and geographical sampling from both native and introduced ranges. Using phylogenetic and genealogical methods, we analysed 610–655 bp of cytochrome c oxidase subunit I DNA sequences from 783 apple snails from 164 Asian locations and 57 native South American locations. In Asia, we found four species of …

Muscleworms, Parelaphostrongylus Andersoni (Nematoda: Protostrongylidae), Discovered In Columbia White-Tailed Deer From Oregon And Washington: Implications For Biogeography And Host Associations, Ingrid M. Asmundsson, Jack A. Mortenson, Eric P. Hoberg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Parelaphostrongylus andersoni is considered a characteristic nematode infecting white-tailed deer (Odocoileus virginianus). Host and geographic distribution for this parasite, however, remain poorly defined in the region of western North America. Fecal samples collected from Columbia white-tailed deer (O. v. leucurus) in a restricted range endemic to Oregon and Washington, USA, were examined for dorsal-spined larvae characteristic of many protostrongylid nematodes. Multilocus DNA sequence data (internal transcribed spacer 2 and cytochrome c oxidase subunit 1) established the identity and a new record for P. andersoni in a subspecies of white-tailed deer previously unrecognized as hosts. Populations of …

Description Of The Tadpole Of Leptodactylus Pustulatus Peters, 1870 (Anura: Leptodactylidae), Rafael O. De Sá, Reuber Brandão, Lorena Dall'ara Guimarães

Biology Faculty Publications

The external morphology and oral disc of the tadpole of Leptodactylus pustulatus Peters, 1870, are described and illustrated for Gosner stage 39. The internal oral anatomy was analyzed with SEM at Gosner stage 36 whereas chondrocranial anatomy is reported for Gosner stage 35. The overall characteristics do not depart from those known for the genus Leptodactylus and they particularly agree for those of the melanonotus species group. The labial tooth row formula is 2(2)/3. Observations are presented that suggest that L. pustulatus engages in larval parental care.

Resumo

São descritas a morfologia externa e o disco oral do girino de …