Poultry or Avian Science Commons^™

The Nebraska Bird Review (September 2023) 91(3), Whole Issue

Nebraska Bird Review

Summer Field Report, June–July 2023, by W. Ross Silcock

2023 Limpkin at Crystal Cove Park, Dakota County, NE, by Bill Huser

2022 (34th) Report of the NOU Records Committee, by Mark A. Brogie

Subscription and Organization Information

2023 Limpkin At Crystal Cove Park, Dakota County, Ne, Bill Huser

Nebraska Bird Review

On the morning of October 7, 2023, I observed Nebraska’s second Limpkin (Aramus guarauna) at Crystal Cove Park in South Sioux City, and the bird was subsequently seen by several other observers throughout that afternoon. Photo and video records were obtained (https://ebird.org/checklist/S151656716). The summer and fall of 2023 brought fourteen sightings to Iowa, though it is impossible to determine how many birds were involved (eBird, 2023). One of those sightings occurred in the northwestern part of the state at Bacon Creek Park in Sioux City when a single Limpkin was independently reported by two observers on …

Evaluation Of Clostridium Septicum Hemolytic Activity, Administration Route, And Dosage Volume Of A Clostridial Dermatitis (Cellulitis) Bacterin-Toxoid On Humoral Immune Response In Commercial Turkeys, Aaron Forga, Kabel Robbins, Andrew Smith, Makenly Coles, Guillermo Tellez-Isaias, Christine N. Vuong, Billy Hargis, Danielle Graham

Poultry Science Faculty Publications and Presentations

Clostridial cellulitis or dermatitis affects commercial turkey flocks, primarily as they approach market age. In the field, this disease has been effectively controlled with antibiotics, but alternatives to antibiotics are needed. Bacterin-toxoid vaccination programs have been shown to prevent clostridial diseases in other species, including humans. Results from previous field studies indicate that vaccination with an experimental whole-cell Clostridium septicum (CS) bacterin-toxoid oil emulsion vaccine reduced clostridial dermatitis-associated mortality and antibiotic usage for some commercial turkey flocks, but vaccination was not always efficacious. To improve vaccine efficacy, studies were conducted to optimize the antigenic component of the experimental …

Alkaline Pretreatment And Air Mixing For Improvement Of Methane Production From Anaerobic Co-Digestion Of Poultry Litter With Wheat Straw, Yuanhang Zhan, Jun Zhu, Yiting Xiao, Leland C. Schrader

Biological and Agricultural Engineering Faculty Publications and Presentations

Alkaline pretreatment (AL) and air mixing (air) both have the potential to improve anaerobic co-digestion (Co-AD) of poultry litter with wheat straw for methane production. In this study, the effects of the combination of AL (pH 12 for 12 h) and air mixing (12 mL·d⁻¹) on the Co-AD process were investigated. The substrate hydrolysis was enhanced by AL, with soluble chemical oxygen demand increased by 4.59 times and volatile fatty acids increased by 5.04 times. The cumulative methane yield in the group of Co-AD by AL integrated with air (Co-(AL + air)), being 287 mL·(g VS_added) …

2022 (34th) Report Of The Nou Records Committee, Mark A. Brogie

Nebraska Bird Review

The functions and methods of the Nebraska Ornithologists’ Union Records Committee (NOURC) are described in its bylaws (NOURC 2010). The committee’s purpose is to provide a procedure for documenting unusual bird sightings and to establish a list of all documented birds for Nebraska. Species for which the NOURC seeks documentation (NOURC Review List) can be found at the NOU website www.NOUbirds.org. Starting in 2020, the NOURC decided to deal mainly with those species deemed as Accidental on the “Official List of the Birds of Nebraska.” Casual species and out-of-range species are now summarized in the “Seasonal Reports” of the …

Summer Field Report, June–July 2023, W. Ross Silcock

Nebraska Bird Review

There were no new species for Nebraska. This was also a lean season for records of species with few Nebraska records. Probably most significant were continuing Common Ravens in two Sioux Co locations, and possibly the first summer records of Baird’s Sparrow, a recording of the latter currently under NOURC review.

Within-state breeders nesting at new locations. There were several instances of nesting reported away from known breeding areas. These include documented records of first nesting Black-necked Stilts in Cherry Co, Least Terns off river at Offutt Base Lake in Sarpy Co, Mississippi Kite in Adams Co, Yellow-throated Vireo in …

Evaluation Of The Virulence Potential Of Avian Pathogenic Escherichia Coli Isolated From Broiler Breeders With Colibacillosis In Mississippi, Jiddu Joseph

Theses and Dissertations

Avian pathogenic Escherichia coli (APEC) is a bacterium that is responsible for colibacillosis in birds. However, information about broiler breeder APEC isolates is limited, but the data is critical due to the transfer of this bacteria down the production pyramid to progenies resulting in high mortality. Therefore, we evaluated the phenotypic virulence characteristics of 28 isolates using embryo lethality and day-old chick challenge assays. Also, the in vitro adhesion and invasion potential of selected nine isolates were identified. Results showed more than 1/3^rd of the isolates were highly virulent and the virulence increased as the number of virulence-associated genes …

Nutritional Strategies To Reduce Salmonella Enteritidis Infections In Laying Hens: Prebiotic, Probiotic, And Precision Biotics, Ishab Poudel

Theses and Dissertations

Salmonella Enteritidis (SE) infections in laying hens is a significant cause of foodborne illness linked to the consumption of contaminated eggs. This dissertation encompasses novel strategies aimed to explore appropriate in-vitro and in-vivo models to evaluate the effects of these novel strategies to reduce SE in laying hens. Firstly, we investigated the potential probiotics, prebiotics, and essential oil combinations to reduce SE in-vitro. The results showed that probiotics and prebiotics are equally effective to reduce SE. In subsequent studies, we evaluated the role of vaccination history on cecal microbiota and SE infections with various doses of oral SE challenge. …

Use Of Comparative Genomics And In Vitro Screening Approach To Identify Vaccine Candidates For The Food-Borne Pathogen Campylobacter Jejuni, Sabin Poudel

Theses and Dissertations

Campylobacteriosis is a leading foodborne illness worldwide, primarily caused by Campylobacter jejuni (C. jejuni) which is associated with poultry consumption. The emergence of antibiotic resistance has emphasized the need for alternative strategies to control C. jejuni colonization in poultry. To assess the prevalence of C. jejuni in poultry, 270 cloacal swab samples were collected from broilers raised under No-Antibiotics Ever system. Among these samples, 16.3% were identified as C. jejuni positive. Notably, these isolates exhibited a diverse range of virulence factors and antimicrobial resistance genes, with 61.36% of isolates showing hyper-motile and 20.45% demonstrating multidrug resistance. Following isolation, whole genome …

Anthropogenic Factors Affecting Common Raven Occurrence And Depredation Of Artificial Nests Within Greater Sage‐Grouse Habitat In Southern Utah, Zoë S. Moffett

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Certain species of wildlife are more generalist and adaptive than others. These species often flourish when supported by human activities that provide additional food and habitat for them. The common raven (Corvus corax; hereafter raven) is one such species; their populations have risen and spread throughout the Intermountain West. As generalist scavengers and predators, ravens have been found to pose a severe threat to several threatened or sensitive species, including the greater sage-grouse (Centrocercus urophasianus; hereafter sage-grouse). The purpose of my research was to determine the specific anthropogenic and habitat factors that may increase the threat …

Evaluation Of Bone And Muscle Quality In Laying Hens Using Quantitative, Radiographic, Computed Tomographic, Biomechanical, And Tissue Level Measures, Cerano Harrison

All Dissertations

Bone quality is an important measure of welfare in laying hens for researchers, veterinarians, and commercial producers who bear the responsibility of providing them with care. Breeding practices that have resulted in high egg productivity of laying hen strains have resulted in an increased susceptibility to developing osteoporosis. Osteoporosis, a decrease in mineralized bone, is accompanied by increased bone fragility that can lead to potentially painful bone fractures that can inhibit some aspects of the birds natural living, respiration and flight being two examples. Current methods of examining laying hen bone quality involve the implementation of diagnostic imaging and biomechanical …

Effect Of Authentic Kefir And Nigella Sativa On Broilers Challenged By Coccidia And Clostridium Perfringens, Julian E. Nixon

All Dissertations

Black seed oil concentrations of 0%, 0.1%, 1% and 5% were added to milk inoculated with kefir grains and incubated at 25°C for 22 h. The pH and microbial count indicated 1% black seed oil caused low inhibition (P > 0.05) of fermentation, but 5% black seed oil caused significant inhibition of the kefir microorganisms (P < 0.05).

Cobb 500 male chicks (n = 256) were distributed in a randomized block design and received one of four treatments: CTRL1 (Non-medicated, no kefir, no Clostridium perfringens), CTRL2 (Non-medicated, no kefir, C. perfringens inoculated), CTRL3 (BMD medicated, no kefir, C. perfringens inoculated), KTRT (Non-medicated, …

Editorial: Fat Metabolism And Deposition In Poultry: Physiology, Genetics, Nutrition Volume Ii, Sami Dridi

Poultry Science Faculty Publications and Presentations

Editorial on the Research Topic

Fat metabolism and deposition in poultry: physiology, genetics, nutrition Volume II

Research Note: Isolation, Speciation, And Anticoccidial Sensitivity Of Eimeria Spp. Recovered From Wild Turkey Feces In The United States, Carolina Trujillo-Peralta, Aaron Ashcraft, Roberto Señas-Cuesta, Makenly Coles, Xochitl Hernandez-Velasco, Callie Selby, Aaron Forga, Guillermo Tellez-Isaias, Christine Vuong, Lisa Bielke, John R. Barta, Billy Hargis, Danielle Graham

Poultry Science Faculty Publications and Presentations

Between 2018 and 2020, over 100 wild turkey fecal samples were collected from the Eastern and Central thirds of the United States, where commercial turkey production is uncommon. We hypothesized that anticoccidial-sensitive Eimeria spp. would be present in wild turkey fecal samples. Samples containing Eimeria spp. oocysts were amplified in vivo. If propagation was successful, the samples were PCR-speciated and subjected to anticoccidial sensitivity testing (AST) for key members of both ionophore and chemical categories of anticoccidial drugs. The purpose of this study was to isolate Eimeria spp. relevant to commercial turkey production that possessed sensitivity to monensin, …

Assessing The Effects Of A Mixed Eimeria Spp. Challenge On Performance, Intestinal Integrity, And The Gut Microbiome Of Broiler Chickens, Danielle Graham, Victor Petrone-Garcia, Xochitl Hernandez-Velasco, Makenly E. Coles, Marco A. Juarez-Estrada, Juan D. Latorre, Jianmin Chai, Stephanie Shouse, Jiangchao Zhao, Aaron Forga, Roberto Señas-Cuesta, Lauren Laverty, Kristen Martin, Carolina Trujillo-Peralta, Ileana Loeza, Latasha Gray, Billy M. Hargis, Guillermo Tellez-Isaias

Poultry Science Faculty Publications and Presentations

A mixed Eimeria spp. challenge model was designed to assess the effects of challenge on broiler chicken performance, intestinal integrity, and the gut microbiome for future use to evaluate alternative strategies for controlling coccidiosis in broiler chickens. The experimental design involved broiler chickens divided into two groups: a control group (uninfected) and a positive control group, infected with Eimeria acervulina (EA), Eimeria maxima (EM), and Eimeria tenella (ET). At day-of-hatch, 240 off-sex male broiler chicks were randomized and allocated to one of two treatment groups. The treatment groups included: (1) Non-challenged (NC, n = 5 replicate pens); and (2) challenged …

Dietary Histidine: Broiler Responsiveness With And Without Endogenous Histidine Reserve Consideration, Kenneth Blake Nelson

Graduate Theses and Dissertations

In the past, histidine warranted little concern from poultry nutritionists because it was seldom deficient in practical broiler diets. With most essential amino acids now commercially available as feed-grade forms to partially replace intact protein ingredients, histidine and its minimum in least-cost formulation are receiving fresh attention. Published histidine requirement data for broilers are sparce, and many of these studies have been conducted on males within the first three weeks post-hatch. Moreover, rudimentary dose-response experimental designs may not be applicable to estimate histidine requirements in later growth periods because histidine is uniquely stored within the body. In times of dietary …

Horizontal Transfer Of Probable Chicken-Pathogenicity Chromosomal Islands Between Staphylococcus Aureus And Staphylococcus Agnetis, Douglas D. Rhoads, Jeff Pummil, Nnamdi S. Ekesi, Adnan A.K. Alrubaye

Cell and Molecular Biology Faculty Publications and Presentations

Staphylococcus agnetis is an emerging pathogen in chickens but has been most commonly isolated from sub-clinical mastitis in bovines. Previous whole-genome analyses for known virulence genes failed to identify determinants for the switch from mild ductal infections in cattle to severe infections in poultry. We now report identification of a family of 15 kbp, 17–19 gene mobile genetic elements (MGEs) specific to chicken osteomyelitis and dermatitis isolates of S. agnetis. These MGEs can be present in multiple copies per genome. The MGE has been vectored on a Staphylococcus phage that separately lysogenized two S. agnetis osteomyelitis strains. …

In Vitro And In Vivo Evaluation Of Chlorhexidine Salts As Potential Alternatives To Potassium Dichromate For Eimeria Maxima M6 Oocyst Preservation, Lauren Laverty, Lesleigh C. Beer, Kristen Martin, Xochitl Hernandez-Velasco, Marco A. Juarez-Estrada, Marcela Arango-Cardona, Aaron Forga, Makenly E. Coles, Christine N. Vuong, Juan D. Latorre, Roberto Señas-Cuesta, Ileana Loeza, Latasha Gray, John R. Barta, Billy M. Hargis, Guillermo Tellez-Isaias, Brittany D. Graham

Poultry Science Faculty Publications and Presentations

Introduction: Coccidiosis caused by the Eimeria spp., an Apicomplexan protozoon, is a major intestinal disease that affects the poultry industry. Although most cases of coccidiosis are subclinical, Eimeria infections impair bird health and decrease overall performance, which can result in compromised welfare and major economic losses. Viable sporulated Eimeria oocysts are required for challenge studies and live coccidiosis vaccines. Potassium dichromate (PDC) is typically used as a preservative for these stocks during storage. Although effective and inexpensive, PDC is also toxic and carcinogenic. Chlorhexidine (CHX) salts may be a possible alternative, as this is a widely used disinfectant with less …

Genetic Considerations For The Conservation Of The Red Junglefowl, Courtney Lee Mcpheron

University Honors Theses

The undomesticated wild populations of our domestic species deserve heightened consideration when it comes to their conservation. Not only do they carry significant socio-cultural and economic roles, but they offer an exceptionally unique case study for population genetics. The red junglefowl (Gallus gallus) of southern and south-eastern Asia is considered to be the living ancestor and progenitor of the domestic chicken. This literature review examines how published research has evaluated its genetic relationship with the chicken and implications for its conservation. A special emphasis is given to the threat of genetic introgression with domestic and feral chicken populations …

Spring Field Report, March - May 2023, W. Ross Silcock

Nebraska Bird Review

First off, I want to reiterate that reports compiled for this Spring Seasonal Report are evaluated against current knowledge as presented in Birds of Nebraska-Online (“BONO”; https://birds.outdoornebraska.gov/). Species whose reports do not add new information on distribution, early or late dates, etc., are listed as having “Routine reports”. Please let me know at [email protected] if you have information that is not in BONO, or if you have additions and/or corrections of information in BONO. Another reminder: if evidence of breeding is observed, please enter the appropriate descriptor in your eBird checklist under “Breeding and Behavior Code”. These descriptors can be …

Impact Of Eimeria Meleagrimitis And Intermittent Amprolium Treatment On Performance And The Gut Microbiome Composition Of Turkey Poults, Carolina Trujillo-Peralta, Juan David Latorre, Jianmin Chai, Roberto Señas-Cuesta, Aaron Forga, Makenly Coles, Jiangchao Zhao, Xochitl Hernandez-Velasco, Guillermo Tellez-Isaias, John R. Barta, Lisa Bielke, Billy Hargis, Danielle Graham

Poultry Science Faculty Publications and Presentations

Introduction: Drug-sensitive live coccidiosis vaccines have been used to control coccidiosis and renew drug sensitivity in commercial chicken operations. However, only limited species coverage vaccines have been available for commercial turkey producers. This study aimed to assess the effect of an E. meleagrimitis vaccine candidate, with and without amprolium intervention, on performance and oocyst shedding. Additionally, the effect of vaccination, amprolium treatment, and E. meleagrimitis challenge on intestinal integrity and microbiome composition was evaluated.

Methods: Experimental groups included: (1) NC (non-vaccinated, non-challenged control); (2) PC (non-vaccinated, challenged control); (3) VX + Amprol (E. meleagrimitis candidate vaccine + amprolium); and …

Impact Of Phytase Supplementation On Meat Quality Of Heat-Stressed Broilers, C. J. Maynard, C. W. Maynard, Garrett J. Mullenix, Alison Ramser, Elizabeth S. Greene, Mike R. Bedford, Sami Dridi

Poultry Science Faculty Publications and Presentations

Heat stress (HS) is one of the most challenging stressors to poultry production sustainability. The adverse effects of HS range from feed intake and growth depression to alteration of meat quality and safety. As phytase supplementation is known to improve nutrient utilization and consequently growth, we undertook the present study to evaluate the effects of dietary phytase on growth and meat quality in heat-stressed broilers. A total of 720 day-old hatch Cobb 500 chicks were assigned to 24 pens within controlled environmental chambers and fed three diets: Negative Control (NC), Positive Control (PC), and NC diet supplemented with 2000 phytase …

Nou Spring Field Days And Annual Meeting. Valentine, May 5-7, 2023

Nebraska Bird Review

The NOU Annual Meeting and Spring Field Days was held in Valentine on May 5-7, 2023, with 50 in attendance. Our meetings and meals took place in the Niobrara Lodge. Field trips were led by Robin Harding, William Flack, T. J. Walker, Dave Heidt, Mark Brogie and Don and Janis Paseka. Destinations included Thomas Creek WMA, Cub Creek Recreation Area, the Niobrara Valley Preserve (TNC Property), the river road from Meadville (SW of Springview) to Norden, the Valentine City Park, Valentine Fish Hatchery, Ft. Niobrara NWR, Anderson Bridge WMA, the Minnechaduza Creek crossing north of Kilgore, Steer Creek, Merritt Reservoir, …

Rethinking The Status And Temporal Occurrence Of The American Woodcock In Nebraska Because Of Its Unusual Life History, Joel G. Jorgensen, Stephen J. Brenner

Nebraska Bird Review

Historical distribution and range expansion -- We reviewed existing information to evaluate conclusions by previous authors (e.g., Sharpe et al. 2001, Silcock and Jorgensen 2023) that woodcock have expanded their range west since settlement of Nebraska by Euro-Americans. We also provide additional context about the species’ distribution over time using regional resources.

Temporal occurrence and abundance -- We used data from woodcock outfitted with satellite transmitters 2021-2022 and compared it with occurrence data from two sources, eBird (eBird.org 2023) from all years through 2022 and the SFRs in the Nebraska Bird Review 1994–2019. We chose not to use SFR data …

The Nebraska Bird Review: A Magazine Of Ornithology Of The Nebraska Region. Volume 91 June 2023 Number 2

Nebraska Bird Review

Spring Field Report, March - May 2023 by W. Ross Silcock …46

Correction to 2022-2023 Christmas Bird Count tally ….70

Rethinking the Status and Temporal Occurrence of the American Woodcock in Nebraska because of its Unusual Life History by Joel G. Jorgensen and Stephen J. Brenner …71

NOU Spring Field Days and Annual Meeting in Valentine, May 5-7, 2023 …..84

Subscription and Organization Information …91

Peripheral And Central Impact Of Methionine Source And Level On Growth Performance, Circulating Methionine Levels And Metabolism In Broiler Chickens, Craig W. Maynard, Elizabeth Gilbert, Frances Yan, Mark A. Cline, Sami Dridi

Poultry Science Faculty Publications and Presentations

The present study was designed to evaluate the effects of DL-methionine (DL-Met) 2-hydroxy-4-(methylthio) butanoic acid (HMTBa), or S-(5′-Adenosyl)-L-methionine chloride (SAM), using feeding trial and central administration, on live performance, plasma metabolites, and the expression of feeding-related hypothalamic neuropeptides in broilers raised to a market age (35 d). Final average body weight (BW) and feed conversion ratio (FCR) from the feeding trial exceeded the performance measurements published by the primary breeder. At d35, the MTBHa group had better BW and lower feed intake, which resulted in a better FCR than the DL-Met group at 87 TSAA to lysine. At the molecular …

Effects Of Sampling Methodologies On Mycoplasma Gallisepticum Tissue Populations In Commercial Layer Pullets, Sethulakshmi Kattupparayil Sasidharan

Theses and Dissertations

Mycoplasma gallisepticum (MG) can cause chronic respiratory disease in chickens and infectious sinusitis in turkeys. Impacts of MG infections can include increased morbidity and mortality, decreased egg production, hatchability and feed efficiency. Biosecurity and bio-surveillance remain the primary means of deterrence as the current means of control are not wholly effective. Further applications towards the characterization of MG-related disease control requires proper understanding of the characteristics of MG infections with accurate and efficient quantification of in vivo MG populations. To this end, study was conducted to determine the in vivo MG populations in infected pullets and to determine impact of …

Roles Of Limestone Particle Size Ratios And Phytase Levels On Performance, Eggshell Quality, And Bone Health In Post-Peak And Late-Lay Single-Cycled W-36 Laying Hens, Charis Waters

Theses and Dissertations

The objective of this study was to investigate the role of fine (F) and coarse (C) limestone ratios and exogenous phytase at standard and superdosing activity on performance, egg quality, and bone quality of post-peak and late-lay Hy-Line W-36 hens. For post-peak, treatments with 40F:60C at 0 and 400 FTU/kg (standard phytase activity) increased hen-day egg production (HDEP). Treatments with 15F:85C decreased feed intake (FI) but also increased unsaleable eggs (UE) and eggshell-breaking strength (EBS). Treatments with 0 and 400 FTU/kg increased albumen quality and treatments with 1500 FTU/kg increased bone quality and phytate breakdown. For late-lay, interaction effects of …

Temporal, Phenotypic, And Quantitative Characterization Of Thyroid Infiltrating Mononuclear Cells During Development Of Spontaneous Autoimmune Thyroiditis In Obese Strain Chickens, Katelyn M. Clark

Poultry Science Undergraduate Honors Theses

The Obese strain (OS) of chickens spontaneously develops autoimmune thyroiditis and is a well-established biomedical model for Hashimoto’s thyroiditis in humans. Both conditions are characterized by the infiltration of the thyroid glands with mononuclear cells resulting in destruction of the thyroid tissue and impairment of the thyroid’s endocrinological functions. Past studies have described mononuclear cell infiltration in thyroids of the OS chickens, but the time-course, cell composition, and relative amounts of the various mononuclear cells infiltrating the thyroids has not been well defined. In this project, the mononuclear cell infiltrate was characterized phenotypically and quantitatively in OS chickens over the …

Poultry Pose Estimation With Deeplabcut, Chiyou Vang

Computer Science and Computer Engineering Undergraduate Honors Theses

This honors thesis dives into the realm of deep learning-based pose estimation research and investigates the potential of DeepLabCut (Lauer, et al., 2021) in accurately and efficiently estimating the pose of poultry. With accurate pose estimation being a crucial aspect in understanding the behavior and movement of animals, this thesis aims to contribute to the development of more effective methods for pose estimation, especially for poultry.

To comprehensively evaluate the performance of DeepLabCut, two different types of chickens were tested in this thesis: a model toy chicken and actual live chickens. Videos were recorded for both types, and key points …